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Aliases for ZNF154 Gene

Aliases for ZNF154 Gene

  • Zinc Finger Protein 154 2 3
  • Zinc Finger Protein 154 (PHZ-92) 2
  • KIAA2003 4
  • PHZ-92 3

External Ids for ZNF154 Gene

Summaries for ZNF154 Gene

Entrez Gene Summary for ZNF154 Gene

  • This gene encodes a protein that belongs to the zinc finger Kruppel family of transcriptional regulators, whose members are thought to function in normal and abnormal cell growth and differentiation. Hypermethylation of this gene is associated with the recurrence of non muscle invasive bladder cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]

GeneCards Summary for ZNF154 Gene

ZNF154 (Zinc Finger Protein 154) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF17.

UniProtKB/Swiss-Prot for ZNF154 Gene

  • May be involved in transcriptional regulation

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF154 Gene

Genomics for ZNF154 Gene

Genomic Location for ZNF154 Gene

Start:
57,697,226 bp from pter
End:
57,709,211 bp from pter
Size:
11,986 bases
Orientation:
Minus strand

Genomic View for ZNF154 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF154 Gene

No data available for Regulatory Elements for ZNF154 Gene

Proteins for ZNF154 Gene

  • Protein details for ZNF154 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13106-ZN154_HUMAN
    Recommended name:
    Zinc finger protein 154
    Protein Accession:
    Q13106
    Secondary Accessions:
    • A7MCY3
    • Q8IVG7
    • Q8NAR0

    Protein attributes for ZNF154 Gene

    Size:
    437 amino acids
    Molecular mass:
    49865 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC23100.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF154 Gene

Proteomics data for ZNF154 Gene at MOPED

Post-translational modifications for ZNF154 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF154 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF154 Gene

Domains for ZNF154 Gene

Gene Families for ZNF154 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZNF154 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q13106

UniProtKB/Swiss-Prot:

ZN154_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q13106
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q13106
Similarity:
  • Contains 12 C2H2-type zinc fingers.:
    • Q13106
genes like me logo Genes that share domains with ZNF154: view

Function for ZNF154 Gene

Molecular function for ZNF154 Gene

GENATLAS Biochemistry: zinc finger protein 154 (C2H2 type,Kruppel-like)
UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity NAS 7557990
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF154: view

Phenotypes for ZNF154 Gene

GenomeRNAi human phenotypes for ZNF154:
genes like me logo Genes that share phenotypes with ZNF154: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF154 Gene

Localization for ZNF154 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF154 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF154 Gene COMPARTMENTS Subcellular localization image for ZNF154 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus NAS 7557990
genes like me logo Genes that share ontologies with ZNF154: view

Pathways for ZNF154 Gene

SuperPathways for ZNF154 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF154: view

Pathways by source for ZNF154 Gene

2 Reactome pathways for ZNF154 Gene

Interacting Proteins for ZNF154 Gene

Gene Ontology (GO) - Biological Process for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated NAS 7557990
genes like me logo Genes that share ontologies with ZNF154: view

Transcripts for ZNF154 Gene

mRNA/cDNA for ZNF154 Gene

Unigene Clusters for ZNF154 Gene

Zinc finger protein 154:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF154 Gene

No ASD Table

Relevant External Links for ZNF154 Gene

GeneLoc Exon Structure for
ZNF154
ECgene alternative splicing isoforms for
ZNF154

Expression for ZNF154 Gene

mRNA expression in normal human tissues for ZNF154 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for ZNF154 Gene Hs.646378

genes like me logo Genes that share expressions with ZNF154: view

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF154 Gene

Orthologs for ZNF154 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF154 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF154 35
  • 99.62 (n)
  • 99.08 (a)
ZNF154 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC789374 35
  • 82.19 (n)
  • 80.41 (a)
dog
(Canis familiaris)
Mammalia ZNF154 35
  • 80.07 (n)
  • 76.44 (a)
ZNF154 36
  • 65 (a)
OneToOne
Species with no ortholog for ZNF154:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF154 Gene

ENSEMBL:
Gene Tree for ZNF154 (if available)
TreeFam:
Gene Tree for ZNF154 (if available)

Paralogs for ZNF154 Gene

Selected SIMAP similar genes for ZNF154 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF154: view

Variants for ZNF154 Gene

Sequence variations from dbSNP and Humsavar for ZNF154 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs999570 -- 57,696,531(+) AGTGG(C/T)AGAGG utr-variant-3-prime, nc-transcript-variant
rs1009158 -- 57,696,017(+) GTCTG(C/T)GGGTC downstream-variant-500B
rs1052850 -- 57,697,696(+) ATAAC(C/G)CACTA utr-variant-3-prime, nc-transcript-variant
rs2009000 -- 57,695,788(+) TGCCT(C/T)GGCTT downstream-variant-500B
rs2074078 - 57,702,584(+) CCCCA(A/C)CGTCG reference, missense, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF154 Gene

Variant ID Type Subtype PubMed ID
nsv912528 CNV Gain 21882294

Relevant External Links for ZNF154 Gene

HapMap Linkage Disequilibrium report
ZNF154

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF154 Gene

Disorders for ZNF154 Gene

No disorders were found for ZNF154 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF154 Gene

Publications for ZNF154 Gene

  1. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. (PMID: 7557990) Tommerup N. … Vissing H. (Genomics 1995) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Diagnosis of bladder cancer recurrence based on urinary levels of EOMES, HOXA9, POU4F2, TWIST1, VIM, and ZNF154 hypermethylation. (PMID: 23056278) Reinert T. … t L. (PLoS ONE 2012) 3

Products for ZNF154 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF154
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF154
    • Block miRNA regulation of ZNF154 using miScript Target Protectors

    Sources for ZNF154 Gene

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