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Aliases for ZNF154 Gene

Aliases for ZNF154 Gene

  • Zinc Finger Protein 154 2 3 5
  • Zinc Finger Protein 154 (PHZ-92) 2
  • KIAA2003 4
  • PHZ-92 3

External Ids for ZNF154 Gene

Previous GeneCards Identifiers for ZNF154 Gene

  • GC19M059111
  • GC19M058662
  • GC19M062888
  • GC19M062900
  • GC19M058208
  • GC19M054524

Summaries for ZNF154 Gene

Entrez Gene Summary for ZNF154 Gene

  • This gene encodes a protein that belongs to the zinc finger Kruppel family of transcriptional regulators, whose members are thought to function in normal and abnormal cell growth and differentiation. Hypermethylation of this gene is associated with the recurrence of non muscle invasive bladder cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]

GeneCards Summary for ZNF154 Gene

ZNF154 (Zinc Finger Protein 154) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF256.

UniProtKB/Swiss-Prot for ZNF154 Gene

  • May be involved in transcriptional regulation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF154 Gene

Genomics for ZNF154 Gene

Regulatory Elements for ZNF154 Gene

Enhancers for ZNF154 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F057654 0.6 ENCODE 11.1 +53.6 53557 2.7 TEAD1 FOXA3 TAL1 MAFG YBX1 ARID1B ZNF316 ZNF274 NCOR1 SMARCA4 ZNF134 ZNF551 ZNF154 ZNF671 ZNF749 ZNF419 RPL19P19 ZNF256 VN1R1 ZNF211
GH19F057769 0.9 ENCODE 10.6 -61.0 -61013 2.4 ATF1 PKNOX1 CREB3L1 WRNIP1 SIN3A ETS1 YY1 ELK1 ZNF143 FOS ZNF814 ZNF776 ZNF586 ZNF805 ZNF671 ZNF417 ZNF154 ZNF256 RPL19P19 ZSCAN4
GH19F057778 0.9 ENCODE 10.5 -69.4 -69367 0.0 RARA ZNF671 ZNF154 ZNF329 PIR55332 ZNF586
GH19F057841 0.2 ENCODE 10.5 -132.3 -132297 0.2 ZNF776 ZNF586 ZNF154 ZNF417 ZNF329 ZNF749 VN1R1 PIR39821 FKBP1AP1
GH19F057886 0.8 FANTOM5 ENCODE 5.1 -179.0 -179048 2.8 HDGF PKNOX1 CREB3L1 WRNIP1 SIN3A ETS1 YY1 SLC30A9 ELK1 ZNF143 ZNF417 ZNF587 ZNF154 ZNF418 ZNF256 ZSCAN4 ZNF548 ZNF606 ZNF135 ZNF134
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF154 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF154 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000349217 411 2000 BCOR CTCF PKNOX1 HCFC1 ZNF740 BHLHE40 RAD21 YY1 SMARCA4 POLR2A

Genomic Location for ZNF154 Gene

Chromosome:
19
Start:
57,696,275 bp from pter
End:
57,709,211 bp from pter
Size:
12,937 bases
Orientation:
Minus strand

Genomic View for ZNF154 Gene

Genes around ZNF154 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF154 Gene

Proteins for ZNF154 Gene

  • Protein details for ZNF154 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13106-ZN154_HUMAN
    Recommended name:
    Zinc finger protein 154
    Protein Accession:
    Q13106
    Secondary Accessions:
    • A7MCY3
    • Q8IVG7
    • Q8NAR0

    Protein attributes for ZNF154 Gene

    Size:
    437 amino acids
    Molecular mass:
    49865 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC23100.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF154 Gene

Post-translational modifications for ZNF154 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF154 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF154 Gene

Domains & Families for ZNF154 Gene

Gene Families for ZNF154 Gene

Suggested Antigen Peptide Sequences for ZNF154 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q13106

UniProtKB/Swiss-Prot:

ZN154_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 12 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 12 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF154: view

Function for ZNF154 Gene

Molecular function for ZNF154 Gene

GENATLAS Biochemistry:
zinc finger protein 154 (C2H2 type,Kruppel-like)
UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding NAS 7557990
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF154: view
genes like me logo Genes that share phenotypes with ZNF154: view

Animal Model Products

miRNA for ZNF154 Gene

miRTarBase miRNAs that target ZNF154

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF154 Gene

Localization for ZNF154 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF154 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF154 Gene COMPARTMENTS Subcellular localization image for ZNF154 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus NAS 7557990
genes like me logo Genes that share ontologies with ZNF154: view

Pathways & Interactions for ZNF154 Gene

SuperPathways for ZNF154 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF154: view

Pathways by source for ZNF154 Gene

2 Reactome pathways for ZNF154 Gene

Interacting Proteins for ZNF154 Gene

Gene Ontology (GO) - Biological Process for ZNF154 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated NAS 7557990
GO:0045892 negative regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF154: view

No data available for SIGNOR curated interactions for ZNF154 Gene

Transcripts for ZNF154 Gene

mRNA/cDNA for ZNF154 Gene

Unigene Clusters for ZNF154 Gene

Zinc finger protein 154:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF154 Gene

No ASD Table

Relevant External Links for ZNF154 Gene

GeneLoc Exon Structure for
ZNF154
ECgene alternative splicing isoforms for
ZNF154

Expression for ZNF154 Gene

mRNA expression in normal human tissues for ZNF154 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of ZNF154 Gene:

ZNF154

SOURCE GeneReport for Unigene cluster for ZNF154 Gene:

Hs.646378
genes like me logo Genes that share expression patterns with ZNF154: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF154 Gene

Orthologs for ZNF154 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF154 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF154 34 35
  • 99.62 (n)
cow
(Bos Taurus)
Mammalia LOC789374 34
  • 82.19 (n)
dog
(Canis familiaris)
Mammalia ZNF154 34 35
  • 80.07 (n)
Species where no ortholog for ZNF154 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF154 Gene

ENSEMBL:
Gene Tree for ZNF154 (if available)
TreeFam:
Gene Tree for ZNF154 (if available)

Paralogs for ZNF154 Gene

(495) SIMAP similar genes for ZNF154 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF154: view

Variants for ZNF154 Gene

Sequence variations from dbSNP and Humsavar for ZNF154 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1009158 -- 57,696,017(+) GTCTG(C/T)GGGTC downstream-variant-500B
rs10404768 -- 57,698,328(+) aatga(C/T)acgtt intron-variant, nc-transcript-variant, utr-variant-3-prime
rs10405771 -- 57,707,164(+) CAGCT(C/T)ACTCA intron-variant
rs10409409 -- 57,704,099(+) CAGAT(A/G)AGATA intron-variant
rs10419113 -- 57,700,162(+) TGATC(A/G)CAAAT intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF154 Gene

Variant ID Type Subtype PubMed ID
esv3644907 CNV gain 21293372
nsv1066059 CNV gain 25217958
nsv580402 CNV gain 21841781

Variation tolerance for ZNF154 Gene

Residual Variation Intolerance Score: 87.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.73; 73.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF154 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF154

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF154 Gene

Disorders for ZNF154 Gene

Relevant External Links for ZNF154

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF154

No disorders were found for ZNF154 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF154 Gene

Publications for ZNF154 Gene

  1. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. (PMID: 7557990) Tommerup N. … Vissing H. (Genomics 1995) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Recurrent patterns of DNA methylation in the ZNF154, CASP8, and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines. (PMID: 24149212) SA!nchez-Vega F. … Elnitski L. (Epigenetics 2013) 3 64
  4. Diagnosis of bladder cancer recurrence based on urinary levels of EOMES, HOXA9, POU4F2, TWIST1, VIM, and ZNF154 hypermethylation. (PMID: 23056278) Reinert T. … t L. (PLoS ONE 2012) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ZNF154 Gene

Sources for ZNF154 Gene

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