Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF143 Gene

Aliases for ZNF143 Gene

  • Zinc Finger Protein 143 2 3 5
  • Selenocysteine TRNA Gene Transcription-Activating Factor 3 4
  • SPH-Binding Factor 3 4
  • HStaf 3 4
  • STAF 3 4
  • SBF 3 4
  • Zinc Finger Protein 143 (Clone PHZ-1) 2
  • Transcriptional Activator Staf 3
  • PHZ-1 3

External Ids for ZNF143 Gene

Previous GeneCards Identifiers for ZNF143 Gene

  • GC11P010122
  • GC11P009522
  • GC11P009446
  • GC11P009439
  • GC11P009153

Summaries for ZNF143 Gene

GeneCards Summary for ZNF143 Gene

ZNF143 (Zinc Finger Protein 143) is a Protein Coding gene. Among its related pathways are RNA Polymerase III Transcription Initiation and Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZIC3.

UniProtKB/Swiss-Prot for ZNF143 Gene

  • Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8.

Gene Wiki entry for ZNF143 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF143 Gene

Genomics for ZNF143 Gene

Regulatory Elements for ZNF143 Gene

Enhancers for ZNF143 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZNF143 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF143 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZNF143 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNF143 Gene

Chromosome:
11
Start:
9,460,319 bp from pter
End:
9,528,524 bp from pter
Size:
68,206 bases
Orientation:
Plus strand

Genomic View for ZNF143 Gene

Genes around ZNF143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF143 Gene

Proteins for ZNF143 Gene

  • Protein details for ZNF143 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P52747-ZN143_HUMAN
    Recommended name:
    Zinc finger protein 143
    Protein Accession:
    P52747
    Secondary Accessions:
    • A8K518
    • B4DLY5
    • E7ER34
    • O75559
    • Q8WUK9

    Protein attributes for ZNF143 Gene

    Size:
    638 amino acids
    Molecular mass:
    68896 Da
    Quaternary structure:
    • Interacts with CHD8.
    SequenceCaution:
    • Sequence=AAC50266.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH20219.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAF83822.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF143 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF143 Gene

Proteomics data for ZNF143 Gene at MOPED

Post-translational modifications for ZNF143 Gene

  • Ubiquitination at Lys 375
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for ZNF143 Gene

Domains & Families for ZNF143 Gene

Gene Families for ZNF143 Gene

Protein Domains for ZNF143 Gene

Suggested Antigen Peptide Sequences for ZNF143 Gene

Graphical View of Domain Structure for InterPro Entry

P52747

UniProtKB/Swiss-Prot:

ZN143_HUMAN :
  • Belongs to the GLI C2H2-type zinc-finger protein family.
  • Contains 7 C2H2-type zinc fingers.
Family:
  • Belongs to the GLI C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF143: view

Function for ZNF143 Gene

Molecular function for ZNF143 Gene

GENATLAS Biochemistry:
zinc finger protein 143,GLI-Kruppel family member,homolog of Xenopus laevis STAF transcriptional activator ortholog
UniProtKB/Swiss-Prot Function:
Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates in efficient U6 RNA polymerase III transcription via its interaction with CHD8.
genes like me logo Genes that share phenotypes with ZNF143: view

Animal Model Products

CRISPR Products

miRNA for ZNF143 Gene

miRTarBase miRNAs that target ZNF143
Targeted motifs for ZNF143 Gene
HOMER Transcription Factor Regulatory Elements motif ZNF143
  • Consensus sequence: ATTTCCCAGVAKSCY Submotif: canonical Cell Type: CUTLL GEO ID: GSE29600

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models and Transcription Factor Targets for ZNF143 Gene

Localization for ZNF143 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF143 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF143 Gene COMPARTMENTS Subcellular localization image for ZNF143 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for ZNF143 Gene

Pathways & Interactions for ZNF143 Gene

genes like me logo Genes that share pathways with ZNF143: view

Gene Ontology (GO) - Biological Process for ZNF143 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription from RNA polymerase II promoter TAS 9566884
GO:0006359 regulation of transcription from RNA polymerase III promoter TAS 9566884
GO:0006383 transcription from RNA polymerase III promoter TAS 9009278
genes like me logo Genes that share ontologies with ZNF143: view

No data available for SIGNOR curated interactions for ZNF143 Gene

Drugs & Compounds for ZNF143 Gene

(1) Drugs for ZNF143 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with ZNF143: view

Transcripts for ZNF143 Gene

Unigene Clusters for ZNF143 Gene

Zinc finger protein 143:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF143 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b ^ 17
SP1: - -
SP2:
SP3: -
SP4:
SP5:

Relevant External Links for ZNF143 Gene

GeneLoc Exon Structure for
ZNF143
ECgene alternative splicing isoforms for
ZNF143

Expression for ZNF143 Gene

mRNA expression in normal human tissues for ZNF143 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZNF143 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (15.4), CD8 Tcells (10.6), Retina (7.6), Fetal Liver (7.3), and NK cells (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF143 Gene



SOURCE GeneReport for Unigene cluster for ZNF143 Gene Hs.523471

mRNA Expression by UniProt/SwissProt for ZNF143 Gene

P52747-ZN143_HUMAN
Tissue specificity: Expressed in all tissues tested, with the strongest expression in ovary.
genes like me logo Genes that share expression patterns with ZNF143: view

Protein tissue co-expression partners for ZNF143 Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues for ZNF143 Gene

Orthologs for ZNF143 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF143 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZNF143 35
  • 93.14 (n)
  • 98.04 (a)
ZNF143 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF143 35
  • 93.5 (n)
  • 99.06 (a)
ZNF143 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp143 35
  • 90.63 (n)
  • 97.02 (a)
Zfp143 16
Zfp143 36
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZNF143 35
  • 99.42 (n)
  • 99.53 (a)
ZNF143 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfp143 35
  • 90.4 (n)
  • 96.48 (a)
oppossum
(Monodelphis domestica)
Mammalia ZNF143 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZNF143 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves ZNF143 35
  • 82.26 (n)
  • 93.72 (a)
ZNF143 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZNF143 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3450 35
znf143 35
  • 73.03 (n)
  • 83.96 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.23822 35
zebrafish
(Danio rerio)
Actinopterygii zgc66276 35
znf143b 35
  • 70.1 (n)
  • 74.42 (a)
wee1 36
  • 74 (a)
OneToMany
znf143a 36
  • 64 (a)
OneToMany
znf143b 36
  • 71 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13634 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 53 (a)
OneToMany
Species with no ortholog for ZNF143:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF143 Gene

ENSEMBL:
Gene Tree for ZNF143 (if available)
TreeFam:
Gene Tree for ZNF143 (if available)

Paralogs for ZNF143 Gene

Paralogs for ZNF143 Gene

genes like me logo Genes that share paralogs with ZNF143: view

Variants for ZNF143 Gene

Sequence variations from dbSNP and Humsavar for ZNF143 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10743108 - 9,516,357(+) AAGGG(C/G)AACAG reference, missense
rs34972213 - 9,512,454(-) CTTCA(C/T)CTTGA reference, missense
rs716238 -- 9,528,783(-) CCATA(C/G)CTGTG downstream-variant-500B
rs716239 -- 9,528,608(-) ATTAG(C/G)TTACA downstream-variant-500B
rs723297 -- 9,493,772(-) AAAAT(A/C/G/T)GAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF143 Gene

Variant ID Type Subtype PubMed ID
nsv7215 OTHER Inversion 18451855
nsv499766 OTHER Inversion 21111241
nsv7670 CNV Loss 18451855
esv2486941 CNV Deletion 19546169
esv24739 CNV Loss 19812545
esv2675320 CNV Deletion 23128226
nsv7671 CNV Insertion 18451855
nsv512209 CNV Loss 21212237
esv2744093 CNV Deletion 23290073

Variation tolerance for ZNF143 Gene

Residual Variation Intolerance Score: 4.29% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.06; 50.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF143 Gene

Human Gene Mutation Database (HGMD)
ZNF143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF143 Gene

Disorders for ZNF143 Gene

Relevant External Links for ZNF143

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF143

No disorders were found for ZNF143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF143 Gene

Publications for ZNF143 Gene

  1. CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription. (PMID: 17938208) Yuan C.-C. … Hernandez N. (Mol. Cell. Biol. 2007) 3 4 23 67
  2. Transcriptional regulation of the human establishment of cohesion 1 homolog 2 gene. (PMID: 20116366) Nishihara M. … Yanagihara I. (Biochem. Biophys. Res. Commun. 2010) 3 23
  3. ZNF143 interacts with p73 and is involved in cisplatin resistance through the transcriptional regulation of DNA repair genes. (PMID: 17297437) Wakasugi T. … Kohno K. (Oncogene 2007) 3 23
  4. ZNF143 mediates basal and tissue-specific expression of human transaldolase. (PMID: 14702349) Grossman C.E. … Perl A. (J. Biol. Chem. 2004) 3 23
  5. Two distinct domains in Staf to selectively activate small nuclear RNA-type and mRNA promoters. (PMID: 9566884) Schuster C. … Carbon P. (Mol. Cell. Biol. 1998) 3 23

Products for ZNF143 Gene

Sources for ZNF143 Gene

Content