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ZNF140 Gene

protein-coding   GIFtS: 52
GCID: GC12P133657

Zinc Finger Protein 140

(Previous name: zinc finger protein 140 (clone pHZ-39))
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 1401 2
Zinc Finger Protein 140 (Clone PHZ-39)1
pHZ-392
EC 1.3.1.268
EC 2.1.1.438

External Ids:    HGNC: 129251   Entrez Gene: 76992   Ensembl: ENSG000001963877   OMIM: 6040825   UniProtKB: P527383   

Export aliases for ZNF140 gene to outside databases

Previous GC identifers: GC12P131178 GC12P133260 GC12P131896 GC12P131391 GC12P132267 GC12P130436


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF140 Gene:
ZNF140 (zinc finger protein 140) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF707.

UniProtKB/Swiss-Prot: ZN140_HUMAN, P52738
Function: May be involved in transcriptional regulation as a repressor




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000012.11  NT_024477.15  NC_018923.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for ZNF140
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF140 promoter sequence
   Search Chromatin IP Primers for ZNF140

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF140


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q24.33   Ensembl cytogenetic band:  12q24.33   HGNC cytogenetic band: 12q24.33

ZNF140 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF140 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P133657:  view genomic region     (about GC identifiers)

Start:
133,656,424 bp from pter      End:
133,684,260 bp from pter
Size:
27,837 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN140_HUMAN, P52738 (See protein sequence)
Recommended Name: Zinc finger protein 140  
Size: 457 amino acids; 52996 Da
Secondary accessions: D3DXJ3 Q8IV75

Explore the universe of human proteins at neXtProt for ZNF140: NX_P52738

Explore proteomics data for ZNF140 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus
  • 2 DME Specific Peptides for ZNF140 (P52738)
     DVAIDFS  HQRTHTGEKPY 


    See ZNF140 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_003431.2  
    ENSEMBL proteins: 
     ENSP00000347755   ENSP00000444905   ENSP00000389566   ENSP00000445411   ENSP00000439805  
     ENSP00000437913   ENSP00000415016   ENSP00000375895   ENSP00000441170   ENSP00000415499  
    Reactome Protein details: P52738

    ZNF140 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for ZNF140

     
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    antibodies-online proteins for ZNF140 (3 products) 

     
    antibodies-online peptides for ZNF140

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    antibodies-online kits for ZNF140 (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P52738

    ProtoNet protein and cluster: P52738

    2 Blocks protein domains:
    IPB001909 KRAB box
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZN140_HUMAN, P52738
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 10 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZNF140           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN140_HUMAN, P52738
    Function: May be involved in transcriptional regulation as a repressor

         Genatlas biochemistry entry for ZNF140:
    zinc finger protein 140 (C2H2 type,Kruppel-like,KRAB subfamily)

         Enzyme Numbers (IUBMB): EC 2.1.1.432 EC 1.3.1.262

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IBA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF140           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF140:
     Synthetic lethal with imatinib 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF140

    miRNA
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    miRTarBase miRNAs that target ZNF140:
    hsa-mir-26b-5p (MIRT029054)

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    2 qRT-PCR Assays for microRNAs that regulate ZNF140:
    hsa-miR-3910 hsa-miR-103a-2*
    SwitchGear 3'UTR luciferase reporter plasmidZNF140 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZNF140

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF140


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN140_HUMAN, P52738: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF140           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF140 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZNF140           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF140
        Generic Transcription Pathway


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF140
    Interactions:

        GeneGlobe Interaction Network for ZNF140

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IBA--

    Find genes that share ontologies with ZNF140           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF140 (ZN140)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF140 gene: 
    NM_003440.2  

    Unigene Cluster for ZNF140:

    Zinc finger protein 140
    Hs.181552  [show with all ESTs]
    Unigene Representative Sequence: AK122741
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000355557(uc001ulo.3 uc001ulp.3 uc010tbu.2) ENST00000356456
    ENST00000412146 ENST00000544426 ENST00000440984 ENST00000319849 ENST00000440550
    ENST00000392041 ENST00000536790 ENST00000429434
    miRNA
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    2 qRT-PCR Assays for microRNAs that regulate ZNF140:
    hsa-miR-3910 hsa-miR-103a-2*
    SwitchGear 3'UTR luciferase reporter plasmidZNF140 3' UTR sequence
    Inhib. RNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF140
    Primer
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    OriGene qPCR primer pairs and template standards for ZNF140
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat ZNF140
      QuantiTect SYBR Green Assays in human, mouse, rat ZNF140
      QuantiFast Probe-based Assays in human, mouse, rat ZNF140

    Additional mRNA sequence: 

    AK122741.1 AK296572.1 AK303240.1 AK313145.1 BC022291.1 BC040561.1 U09368.1 

    11 DOTS entries:

    DT.451633  DT.95159528  DT.121214050  DT.121214124  DT.40230959  DT.97837634  DT.121213922  DT.121214038 
    DT.75101272  DT.95337672  DT.40250234 

    Selected AceView cDNA sequences (see all 87):

    AA928315 AI887845 AW612210 AW080105 AI275779 AW152508 CR601967 CA435627 
    AI077691 BC040561 AI702590 CA431110 BC022291 AI272003 AL709071 NM_003440 
    AI089705 BF438601 BE073574 BQ017154 AW949874 BU521239 AI300487 BM800299 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ZNF140 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d · 8e · 8f
    SP1:                                            -                       -     -                                       
    SP2:                                            -                       -                                             
    SP3:                                            -                       -     -                                       
    SP4:                    -     -     -           -                       -     -                                       
    SP5:                                      -     -                       -     -                                       


    ECgene alternative splicing isoforms for ZNF140

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF140 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GACAAGGGAT
    ZNF140 Expression
    About this image

    ZNF140 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF140 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.181552

    UniProtKB/Swiss-Prot: ZN140_HUMAN, P52738
    Tissue specificity: Seems ubiquitous. Seen in the heart, brain, placenta, lung, liver, skeletal muscle, kidney and
    pancreas

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for ZNF140 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia ZNF1401 zinc finger protein 140 89.57(n)
    88.99(a)
      100855854  XM_003639924.2  XP_003639972.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes ZAP16
    Zinc-regulated transcription factor; binds to zinc...
    14(a)
    1 → many
    X(330431-333073) YJL056C


    ENSEMBL Gene Tree for ZNF140 (if available)
    TreeFam Gene Tree for ZNF140 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF140 gene
    ZNF7072  ZFP922  ZNF3022  ZNF8292  ZNF22  ZNF5662  
    Selected SIMAP similar genes for ZNF140 using alignment to 10 protein entries:     ZN140_HUMAN (see all proteins) (see all similar genes):
    ZNF649    ZNF283    FIK    ZNF571    ZNF624    ZFP90
    kr-znf3    ZNF780B    ZNF347    ZNF738    ZNF573    ZNF850
    ZNF493    ZNF569    ZNF682    ZFS-4    ZNF177    ZNF519

    Find genes that share paralogs with ZNF140           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF140 (see all 471)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1419251611,2
    C--133655217(+) TGCTC-/TTTTTT 1 -- us2k10--------
    rs1165837981,2
    C--133655719(+) ACTCTA/GGCCTG 1 -- us2k10--------
    rs1995476771,2
    C--133655747(+) AAACTC/GCTGAC 1 -- us2k10--------
    rs3697531281,2
    C--133656235(-) TTAGTC/TGGCTT 1 -- us2k10--------
    rs1142735381,2
    C--133656293(+) GTGGCC/TATGGC 1 -- us2k10--------
    rs1147266391,2
    C--133656706(+) GGGCCG/TTGTGT 1 -- us2k10--------
    rs1161376991,2
    C--133656774(+) GGCGTC/GCGGCG 1 -- us2k10--------
    rs1160358621,2
    C--133656806(+) TCGCCA/GGAGCT 1 -- us2k10--------
    rs1155336611,2
    C--133656858(+) TGGGAA/GTCGTA 1 -- us2k10--------
    rs1166688901,2
    C--133656898(+) CGCACA/GGTCGC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF140 (133656424 - 133684260 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for ZNF140:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv330e199CNV Deletion23128226
    nsv899835CNV Loss21882294
    nsv470337CNV Loss18288195
    nsv899836CNV Gain21882294
    nsv518970CNV Gain19592680
    esv27162CNV Gain+Loss19812545
    essv8522CNV CNV17122850
    dgv538e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 604082    OMIM disorders: --


    Find genes that share disorders with ZNF140           About GenesLikeMe

    Genetic Association Database (GAD): ZNF140

    Export disorders for ZNF140 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF140 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF140)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. (PubMed id 7557990)1, 2, 3 Tommerup N. and Vissing H. (Genomics 1995)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Repression of transcriptional activity by heterologous KRAB domains present in zinc finger proteins. (PubMed id 7649249)1, 2 Vissing H.... Thiesen H.-J. (FEBS Lett. 1995)
    4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)
    5. The finished DNA sequence of human chromosome 12. (PubMed id 16541075)2 Scherer S.E.... Gibbs R.A. (Nature 2006)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    8. KAP-1, a novel corepressor for the highly conserved KRAB repression domain. (PubMed id 8769649)1 Friedman J.R.... Rauscher F.J. III (Genes Dev. 1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
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    OMIM
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7699 HGNC: 12925 AceView: ZNF140 Ensembl:ENSG00000196387 euGenes: HUgn7699
    ECgene: ZNF140 H-InvDB: ZNF140

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF140 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF140 gene:
    Search GeneIP for patents involving ZNF140

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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