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Aliases for ZNF117 Gene

Aliases for ZNF117 Gene

  • Zinc Finger Protein 117 2 3 5
  • Provirus-Linked Krueppel 3 4
  • Zinc Finger Protein HPF9 3 4
  • H-PLK 3 4
  • Krueppel-Related Zinc Finger Protein 3
  • Zinc Finger Protein 117 (HPF9) 2
  • HPF9 3

External Ids for ZNF117 Gene

Previous GeneCards Identifiers for ZNF117 Gene

  • GC07U990128
  • GC07M063078
  • GC07M063835
  • GC07M063848
  • GC07M063881
  • GC07M064074
  • GC07M064434
  • GC07M060814

Summaries for ZNF117 Gene

Entrez Gene Summary for ZNF117 Gene

  • This gene encodes a protein containing multiple C2H2-type zinc finger motifs. Readthrough transcription occurs between this gene and the upstream endogenous retrovirus group 3 member 1 (ERV3-1) locus, and may result in additional transcript variants encoding the zinc finger protein. [provided by RefSeq, Jan 2017]

GeneCards Summary for ZNF117 Gene

ZNF117 (Zinc Finger Protein 117) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF724.

UniProtKB/Swiss-Prot for ZNF117 Gene

  • May be involved in transcriptional regulation.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF117 Gene

Genomics for ZNF117 Gene

Regulatory Elements for ZNF117 Gene

Enhancers for ZNF117 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G064995 1.7 Ensembl ENCODE dbSUPER 18.1 +4.8 4800 11.8 MLX CREB3L1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 GTF2IP14 ERV3-1 CCT6P3 INTS4P1 ZNF117 VKORC1L1 ENSG00000227113 EEF1DP4 ZNF680 ZNF273
GH07G065251 1.3 Ensembl ENCODE 13.9 -245.6 -245605 1.5 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 KLF7 ZNF263 SP3 NFYC GTF2IP14 CCT6P3 ZNF117 CRCP ENSG00000229064 CLUHP7
GH07G064902 1 ENCODE 14 +103.2 103240 2.3 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZBTB7B YY1 EEF1DP4 ZNF117 ZNF273 LOC441239 VN1R42P
GH07G065260 0.9 Ensembl 14.2 -254.0 -254049 0.7 HDAC1 ATF1 ARNT ZSCAN4 KLF17 FEZF1 CHAMP1 TCF12 MIER1 ZBTB2 GTF2IP14 ERV3-1 ZNF117 CRCP CLUHP7 ENSG00000229064
GH07G065037 0.9 ENCODE 11.6 -32.4 -32436 2.9 HDAC1 TBP RB1 NFRKB KLF17 SIN3A YY1 EGR1 CREM CAVIN1 GTF2IP14 CCT6P3 INTS4P1 VKORC1L1 ZNF117 ENSG00000239985 GC07P065066
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF117 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNF117 Gene

Chromosome:
7
Start:
64,971,776 bp from pter
End:
65,006,684 bp from pter
Size:
34,909 bases
Orientation:
Minus strand

Genomic View for ZNF117 Gene

Genes around ZNF117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF117 Gene

Proteins for ZNF117 Gene

  • Protein details for ZNF117 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q03924-ZN117_HUMAN
    Recommended name:
    Zinc finger protein 117
    Protein Accession:
    Q03924
    Secondary Accessions:
    • Q02313
    • Q7Z7Q7

    Protein attributes for ZNF117 Gene

    Size:
    483 amino acids
    Molecular mass:
    56376 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAA36010.1; Type=Erroneous termination; Positions=428; Note=Translated as Arg.; Evidence={ECO:0000305}; Sequence=AAA58666.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAG41761.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305};

neXtProt entry for ZNF117 Gene

Post-translational modifications for ZNF117 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF117 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF117 Gene

Domains & Families for ZNF117 Gene

Gene Families for ZNF117 Gene

Protein Domains for ZNF117 Gene

Suggested Antigen Peptide Sequences for ZNF117 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q03924

UniProtKB/Swiss-Prot:

ZN117_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF117: view

Function for ZNF117 Gene

Molecular function for ZNF117 Gene

GENATLAS Biochemistry:
zinc finger protein 117 (HPF9),KRAB subfamily (C2H2 type,Kruppel-like)
UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF117 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding NAS 2023909
GO:0008270 zinc ion binding NAS 2505992
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF117: view
genes like me logo Genes that share phenotypes with ZNF117: view

Animal Model Products

CRISPR Products

miRNA for ZNF117 Gene

miRTarBase miRNAs that target ZNF117

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF117 Gene

Localization for ZNF117 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF117 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF117 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF117 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF117: view

Pathways & Interactions for ZNF117 Gene

SuperPathways for ZNF117 Gene

No Data Available

Interacting Proteins for ZNF117 Gene

Gene Ontology (GO) - Biological Process for ZNF117 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF117: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF117 Gene

Transcripts for ZNF117 Gene

mRNA/cDNA for ZNF117 Gene

Unigene Clusters for ZNF117 Gene

Zinc finger protein 117:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF117 Gene

No ASD Table

Relevant External Links for ZNF117 Gene

GeneLoc Exon Structure for
ZNF117
ECgene alternative splicing isoforms for
ZNF117

Expression for ZNF117 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF117 Gene

Protein differential expression in normal tissues from HIPED for ZNF117 Gene

This gene is overexpressed in Stomach (68.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF117 Gene



Protein tissue co-expression partners for ZNF117 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNF117 Gene:

ZNF117

SOURCE GeneReport for Unigene cluster for ZNF117 Gene:

Hs.250693
genes like me logo Genes that share expression patterns with ZNF117: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF117 Gene

Orthologs for ZNF117 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF117 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF117 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 35
  • 47 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 42 (a)
ManyToMany
-- 35
  • 37 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp87 35
  • 39 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 34 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 50 (a)
ManyToMany
-- 35
  • 38 (a)
ManyToMany
-- 35
  • 35 (a)
ManyToMany
-- 35
  • 31 (a)
ManyToMany
-- 35
  • 30 (a)
ManyToMany
-- 35
  • 29 (a)
ManyToMany
-- 35
  • 29 (a)
ManyToMany
-- 35
  • 26 (a)
ManyToMany
Species where no ortholog for ZNF117 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF117 Gene

ENSEMBL:
Gene Tree for ZNF117 (if available)
TreeFam:
Gene Tree for ZNF117 (if available)

Paralogs for ZNF117 Gene

(508) SIMAP similar genes for ZNF117 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF117: view

Variants for ZNF117 Gene

Sequence variations from dbSNP and Humsavar for ZNF117 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000023149 -- 64,980,008(+) ACTTT(G/T)GAATG intron-variant
rs1000315821 -- 64,989,997(+) AACCT(C/G)GGAGG downstream-variant-500B, utr-variant-5-prime
rs1000366499 -- 64,990,290(+) AGATG(C/T)GGGCT downstream-variant-500B, utr-variant-5-prime
rs1000699567 -- 64,991,348(+) CTTCC(A/C/T)GGGCT upstream-variant-2KB, reference, missense
rs1000802503 -- 64,986,268(+) GCCTA(C/T)GTCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF117 Gene

Variant ID Type Subtype PubMed ID
dgv1099e201 CNV deletion 23290073
dgv226e55 CNV loss 17911159
esv2422405 CNV duplication 17116639
nsv1019180 CNV loss 25217958
nsv1022042 CNV gain 25217958
nsv464518 CNV gain 19166990
nsv473467 CNV novel sequence insertion 20440878
nsv607312 CNV gain 21841781
nsv970505 CNV duplication 23825009

Variation tolerance for ZNF117 Gene

Residual Variation Intolerance Score: 81.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.23; 97.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF117 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF117

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF117 Gene

Disorders for ZNF117 Gene

Relevant External Links for ZNF117

Genetic Association Database (GAD)
ZNF117
Human Genome Epidemiology (HuGE) Navigator
ZNF117
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF117

No disorders were found for ZNF117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF117 Gene

Publications for ZNF117 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  2. Localization of the human KRAB finger gene ZNF117 (HPF9) to chromosome 7q11.2. (PMID: 1427907) Bellefroid E.J. … Martial J.A. (Genomics 1992) 2 3 64
  3. The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. (PMID: 2023909) Bellefroid E.J. … Martial J.A. (Proc. Natl. Acad. Sci. U.S.A. 1991) 3 4 64
  4. Human proviral mRNAs down regulated in choriocarcinoma encode a zinc finger protein related to Kruppel. (PMID: 2115127) Kato N. … Cohen M. (Mol. Cell. Biol. 1990) 3 4 64
  5. The human genome contains hundreds of genes coding for finger proteins of the Kruppel type. (PMID: 2505992) Bellefroid E.J. … Martial J.A. (DNA 1989) 3 4 64

Products for ZNF117 Gene

Sources for ZNF117 Gene

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