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Aliases for ZMYND12 Gene

Aliases for ZMYND12 Gene

  • Zinc Finger MYND-Type Containing 12 2 3
  • Zinc Finger, MYND-Type Containing 12 5

External Ids for ZMYND12 Gene

Previous GeneCards Identifiers for ZMYND12 Gene

  • GC01M042359
  • GC01M042309
  • GC01M042565
  • GC01M042668
  • GC01M042896
  • GC01M041016

Summaries for ZMYND12 Gene

GeneCards Summary for ZMYND12 Gene

ZMYND12 (Zinc Finger MYND-Type Containing 12) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMYND12 Gene

Genomics for ZMYND12 Gene

Regulatory Elements for ZMYND12 Gene

Enhancers for ZMYND12 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZMYND12 on UCSC Golden Path with GeneCards custom track

Promoters for ZMYND12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZMYND12 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZMYND12 Gene

Chromosome:
1
Start:
42,430,329 bp from pter
End:
42,456,267 bp from pter
Size:
25,939 bases
Orientation:
Minus strand

Genomic View for ZMYND12 Gene

Genes around ZMYND12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZMYND12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZMYND12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMYND12 Gene

Proteins for ZMYND12 Gene

  • Protein details for ZMYND12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0C1-ZMY12_HUMAN
    Recommended name:
    Zinc finger MYND domain-containing protein 12
    Protein Accession:
    Q9H0C1
    Secondary Accessions:
    • Q5VUS6
    • Q8TC87
    • Q96M51

    Protein attributes for ZMYND12 Gene

    Size:
    365 amino acids
    Molecular mass:
    41818 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZMYND12 Gene

Proteomics data for ZMYND12 Gene at MOPED

Post-translational modifications for ZMYND12 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZMYND12 Gene

No data available for DME Specific Peptides for ZMYND12 Gene

Domains & Families for ZMYND12 Gene

Gene Families for ZMYND12 Gene

Protein Domains for ZMYND12 Gene

Suggested Antigen Peptide Sequences for ZMYND12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H0C1

UniProtKB/Swiss-Prot:

ZMY12_HUMAN :
  • Contains 1 MYND-type zinc finger.
Similarity:
  • Contains 1 MYND-type zinc finger.
  • Contains 2 TPR repeats.
genes like me logo Genes that share domains with ZMYND12: view

Function for ZMYND12 Gene

genes like me logo Genes that share phenotypes with ZMYND12: view

Animal Model Products

CRISPR Products

miRNA for ZMYND12 Gene

miRTarBase miRNAs that target ZMYND12

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZMYND12 Gene

Localization for ZMYND12 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZMYND12 Gene COMPARTMENTS Subcellular localization image for ZMYND12 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZMYND12 Gene

Pathways & Interactions for ZMYND12 Gene

SuperPathways for ZMYND12 Gene

No Data Available

Interacting Proteins for ZMYND12 Gene

Gene Ontology (GO) - Biological Process for ZMYND12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZMYND12 Gene

Drugs & Compounds for ZMYND12 Gene

No Compound Related Data Available

Transcripts for ZMYND12 Gene

Unigene Clusters for ZMYND12 Gene

Zinc finger, MYND-type containing 12:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZMYND12 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9
SP1: - - -
SP2: -
SP3:
SP4:

Relevant External Links for ZMYND12 Gene

GeneLoc Exon Structure for
ZMYND12
ECgene alternative splicing isoforms for
ZMYND12

Expression for ZMYND12 Gene

mRNA expression in normal human tissues for ZMYND12 Gene

mRNA differential expression in normal tissues according to GTEx for ZMYND12 Gene

This gene is overexpressed in Testis (x11.1).

Protein differential expression in normal tissues from HIPED for ZMYND12 Gene

This gene is overexpressed in Plasma (57.9) and Ovary (11.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZMYND12 Gene



SOURCE GeneReport for Unigene cluster for ZMYND12 Gene Hs.294009

genes like me logo Genes that share expression patterns with ZMYND12: view

Protein tissue co-expression partners for ZMYND12 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZMYND12 Gene

Orthologs for ZMYND12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZMYND12 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZMYND12 35
  • 88.58 (n)
  • 86.3 (a)
ZMYND12 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZMYND12 35
  • 87.12 (n)
  • 86.03 (a)
ZMYND12 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zmynd12 35
  • 83.89 (n)
  • 83.06 (a)
Zmynd12 16
Zmynd12 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZMYND12 35
  • 99.36 (n)
  • 99.18 (a)
ZMYND12 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zmynd12 35
  • 84.16 (n)
  • 83.06 (a)
oppossum
(Monodelphis domestica)
Mammalia ZMYND12 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZMYND12 36
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves ZMYND12 35
  • 60.54 (n)
  • 52.65 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3332 35
zmynd12 35
  • 61.43 (n)
  • 54.38 (a)
zebrafish
(Danio rerio)
Actinopterygii zymnd12 35
  • 51.5 (n)
  • 41.62 (a)
zymnd12 36
  • 38 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3655 36
  • 37 (a)
OneToOne
Species with no ortholog for ZMYND12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZMYND12 Gene

ENSEMBL:
Gene Tree for ZMYND12 (if available)
TreeFam:
Gene Tree for ZMYND12 (if available)

Paralogs for ZMYND12 Gene

No data available for Paralogs for ZMYND12 Gene

Variants for ZMYND12 Gene

Sequence variations from dbSNP and Humsavar for ZMYND12 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1034268 - 42,433,172(+) GTAAA(A/G/T)CATGA reference, missense
rs1002701 -- 42,448,024(-) TTTAC(A/G)TGTTT intron-variant
rs915330 -- 42,440,732(+) tggcg(C/T)gatct intron-variant
rs915331 -- 42,440,959(+) CACTG(C/T)GTCTG intron-variant
rs915332 -- 42,440,989(+) AGGGT(A/G)AATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZMYND12 Gene

Variant ID Type Subtype PubMed ID
nsv870704 CNV Gain 21882294

Variation tolerance for ZMYND12 Gene

Residual Variation Intolerance Score: 66.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.91; 35.60% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ZMYND12 Gene

Disorders for ZMYND12 Gene

Relevant External Links for ZMYND12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZMYND12

No disorders were found for ZMYND12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZMYND12 Gene

Publications for ZMYND12 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 67
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZMYND12 Gene

Sources for ZMYND12 Gene

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