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Aliases for ZMYM5 Gene

Aliases for ZMYM5 Gene

  • Zinc Finger MYM-Type Containing 5 2 3 5
  • Zinc Finger Protein 237 2 3 4
  • Zinc Finger Protein 198-Like 1 3 4
  • ZNF198L1 3 4
  • ZNF237 3 4
  • Zinc Finger MYM-Type Protein 5 3
  • Zinc Finger, MYM-Type 5 3
  • HSPC050 3
  • MYM 3

External Ids for ZMYM5 Gene

Previous HGNC Symbols for ZMYM5 Gene

  • ZNF237

Previous GeneCards Identifiers for ZMYM5 Gene

  • GC13M019310
  • GC13M020397
  • GC13M001202

Summaries for ZMYM5 Gene

GeneCards Summary for ZMYM5 Gene

ZMYM5 (Zinc Finger MYM-Type Containing 5) is a Protein Coding gene. An important paralog of this gene is ZMYM2.

UniProtKB/Swiss-Prot for ZMYM5 Gene

  • Functions as a transcriptional regulator.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMYM5 Gene

Genomics for ZMYM5 Gene

Regulatory Elements for ZMYM5 Gene

Enhancers for ZMYM5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F019791 0.2 ENCODE 11.5 +71.6 71591 0.2 KDM1A ZMYM5 PSPC1 ST6GALNAC4P1
GH13F019632 0.2 ENCODE 6.7 +229.6 229614 2.6 HDGF PKNOX1 ATF1 WRNIP1 ARID4B SIN3A YBX1 GLI4 ZNF48 ZNF2 MPHOSPH8 ENSG00000226352 PSPC1 ZMYM5 LOC101928697 GC13M019667
GH13F019601 0.8 Ensembl ENCODE 6.2 +261.4 261436 2.0 CREB3L1 SIN3A DMAP1 ELK1 ZNF143 KAT8 ZNF585B MXD3 SP7 CTCF MPHOSPH8 ESRRAP1 ENSG00000226352 PSPC1 ZMYM5 PIR42308 LINC00350
GH13F019596 1.3 Ensembl ENCODE 6 +266.1 266076 1.4 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 FOS ZHX2 PPARG ZNF518A ESRRAP1 MPHOSPH8 ENSG00000226352 PSPC1 ZMYM5 PIR42308 LINC00350
GH13F019780 1.1 ENCODE 5.5 +81.4 81437 2.9 HDGF ARID4B SIN3A GLI4 DMAP1 ZNF2 YY1 GTF3C2 ZNF121 GATA2 MPHOSPH8 ZMYM5 GC13P019780 PSPC1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZMYM5 on UCSC Golden Path with GeneCards custom track

Promoters for ZMYM5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000054208 36 4000 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for ZMYM5 Gene

Chromosome:
13
Start:
19,823,482 bp from pter
End:
19,863,636 bp from pter
Size:
40,155 bases
Orientation:
Minus strand

Genomic View for ZMYM5 Gene

Genes around ZMYM5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZMYM5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZMYM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMYM5 Gene

Proteins for ZMYM5 Gene

  • Protein details for ZMYM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UJ78-ZMYM5_HUMAN
    Recommended name:
    Zinc finger MYM-type protein 5
    Protein Accession:
    Q9UJ78
    Secondary Accessions:
    • B2R6V1
    • Q5T6E1
    • Q5T6E2
    • Q5T6E4
    • Q96IY6
    • Q9NZY5
    • Q9UBW0
    • Q9UJ77

    Protein attributes for ZMYM5 Gene

    Size:
    669 amino acids
    Molecular mass:
    74817 Da
    Quaternary structure:
    • Interacts (via N-terminal 120 amino acid region) with ETV5 (via C-terminal).
    SequenceCaution:
    • Sequence=AAF29022.1; Type=Frameshift; Positions=286, 322, 337; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ZMYM5 Gene

    Alternative splice isoforms for ZMYM5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZMYM5 Gene

Post-translational modifications for ZMYM5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZMYM5 Gene

Domains & Families for ZMYM5 Gene

Gene Families for ZMYM5 Gene

Protein Domains for ZMYM5 Gene

Suggested Antigen Peptide Sequences for ZMYM5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UJ78

UniProtKB/Swiss-Prot:

ZMYM5_HUMAN :
  • Contains 4 MYM-type zinc fingers.
Similarity:
  • Contains 4 MYM-type zinc fingers.
genes like me logo Genes that share domains with ZMYM5: view

Function for ZMYM5 Gene

Molecular function for ZMYM5 Gene

UniProtKB/Swiss-Prot Function:
Functions as a transcriptional regulator.

Gene Ontology (GO) - Molecular Function for ZMYM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA 17126306
GO:0003677 DNA binding IBA --
GO:0005515 protein binding IPI 17126306
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZMYM5: view

Phenotypes for ZMYM5 Gene

genes like me logo Genes that share phenotypes with ZMYM5: view

Animal Model Products

miRNA for ZMYM5 Gene

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZMYM5 Gene

Localization for ZMYM5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZMYM5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZMYM5 Gene COMPARTMENTS Subcellular localization image for ZMYM5 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZMYM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IBA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with ZMYM5: view

Pathways & Interactions for ZMYM5 Gene

SuperPathways for ZMYM5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZMYM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
GO:0007275 multicellular organism development IBA --
genes like me logo Genes that share ontologies with ZMYM5: view

No data available for Pathways by source and SIGNOR curated interactions for ZMYM5 Gene

Transcripts for ZMYM5 Gene

Unigene Clusters for ZMYM5 Gene

Zinc finger, MYM-type 5:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZMYM5 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9
SP1: -
SP2: - -
SP3:
SP4: -
SP5: -
SP6:
SP7: - -

Relevant External Links for ZMYM5 Gene

GeneLoc Exon Structure for
ZMYM5
ECgene alternative splicing isoforms for
ZMYM5

Expression for ZMYM5 Gene

mRNA expression in normal human tissues for ZMYM5 Gene

Protein differential expression in normal tissues from HIPED for ZMYM5 Gene

This gene is overexpressed in Bone (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZMYM5 Gene



Protein tissue co-expression partners for ZMYM5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZMYM5 Gene:

ZMYM5

SOURCE GeneReport for Unigene cluster for ZMYM5 Gene:

Hs.530988
genes like me logo Genes that share expression patterns with ZMYM5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZMYM5 Gene

Orthologs for ZMYM5 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZMYM5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZMYM5 34 35
  • 99.55 (n)
dog
(Canis familiaris)
Mammalia ZMYM5 34
  • 87.8 (n)
cow
(Bos Taurus)
Mammalia ZMYM5 34 35
  • 85.58 (n)
rat
(Rattus norvegicus)
Mammalia RGD1306353 34
  • 79.98 (n)
mouse
(Mus musculus)
Mammalia Zmym5 34 16 35
  • 79.86 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
ManyToMany
chicken
(Gallus gallus)
Aves -- 35
  • 18 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 17 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii zmym2 35
  • 11 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta woc 35
  • 4 (a)
OneToMany
Species where no ortholog for ZMYM5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZMYM5 Gene

ENSEMBL:
Gene Tree for ZMYM5 (if available)
TreeFam:
Gene Tree for ZMYM5 (if available)

Paralogs for ZMYM5 Gene

Paralogs for ZMYM5 Gene

genes like me logo Genes that share paralogs with ZMYM5: view

Variants for ZMYM5 Gene

Sequence variations from dbSNP and Humsavar for ZMYM5 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10161995 -- 19,864,795(+) TGGCG(C/T)CCGGT upstream-variant-2KB
rs10219942 -- 19,849,936(+) agatc(A/G)tgcca intron-variant
rs10219966 -- 19,850,120(+) TCTCC(C/T)CCAAA intron-variant
rs10220082 -- 19,845,503(+) GAGTT(A/G)GCATG intron-variant
rs10220121 -- 19,845,335(+) TTGTA(C/T)TATGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZMYM5 Gene

Variant ID Type Subtype PubMed ID
dgv1607n100 CNV gain 25217958
dgv1609n100 CNV gain 25217958
dgv3071n54 CNV loss 21841781
dgv535e212 CNV gain 25503493
esv2761244 CNV gain 21179565
esv3582126 CNV gain 25503493
esv3631393 CNV gain 21293372
esv3631403 CNV gain 21293372
esv3631404 CNV gain 21293372
esv3631405 CNV loss 21293372
esv3631406 CNV gain 21293372
esv3631407 CNV loss 21293372
esv3631408 CNV gain 21293372
esv3892297 CNV gain 25118596
esv3892300 CNV loss 25118596
nsv1036275 CNV loss 25217958
nsv1038964 CNV gain 25217958
nsv1041042 CNV gain 25217958
nsv1046946 CNV gain 25217958
nsv1054226 CNV gain 25217958
nsv1078303 OTHER inversion 25765185
nsv1116721 CNV tandem duplication 24896259
nsv1127310 CNV deletion 24896259
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455826 CNV loss 19166990
nsv516945 CNV gain+loss 19592680
nsv561213 CNV loss 21841781
nsv561214 CNV gain 21841781

Variation tolerance for ZMYM5 Gene

Residual Variation Intolerance Score: 86.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.48; 77.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZMYM5 Gene

Human Gene Mutation Database (HGMD)
ZMYM5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZMYM5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZMYM5 Gene

Disorders for ZMYM5 Gene

Relevant External Links for ZMYM5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZMYM5

No disorders were found for ZMYM5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZMYM5 Gene

Publications for ZMYM5 Gene

  1. Cloning of ZNF237, a novel member of the MYM gene family that maps to human chromosome 13q11-->q12. (PMID: 10894931) Sohal J. … Cross N.C. (Cytogenet. Cell Genet. 2000) 3 4 22 64
  2. Analysis of transcriptional modulation of the presenilin 1 gene promoter by ZNF237, a candidate binding partner of the Ets transcription factor ERM. (PMID: 17126306) Pastorcic M. … Das H.K. (Brain Res. 2007) 3 4 64
  3. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3 4 64

Products for ZMYM5 Gene

Sources for ZMYM5 Gene

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