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Aliases for ZMAT5 Gene

Aliases for ZMAT5 Gene

  • Zinc Finger, Matrin-Type 5 2 3
  • U11/U12 Small Nuclear Ribonucleoprotein 20 KDa Protein 3 4
  • U11/U12 SnRNP 20 KDa Protein 3 4
  • U11/U12 SnRNP 20K 2 3
  • U11/U12-20K 3 4
  • Zinc Finger Matrin-Type Protein 5 3
  • Zinc Finger, Matrin Type 5 3
  • SNRNP20 3

External Ids for ZMAT5 Gene

Previous GeneCards Identifiers for ZMAT5 Gene

  • GC22M028452
  • GC22M028456
  • GC22M030126
  • GC22M013090

Summaries for ZMAT5 Gene

GeneCards Summary for ZMAT5 Gene

ZMAT5 (Zinc Finger, Matrin-Type 5) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMAT5 Gene

Genomics for ZMAT5 Gene

Regulatory Elements for ZMAT5 Gene

Genomic Location for ZMAT5 Gene

Start:
29,730,956 bp from pter
End:
29,767,011 bp from pter
Size:
36,056 bases
Orientation:
Minus strand

Genomic View for ZMAT5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZMAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMAT5 Gene

Proteins for ZMAT5 Gene

  • Protein details for ZMAT5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UDW3-ZMAT5_HUMAN
    Recommended name:
    Zinc finger matrin-type protein 5
    Protein Accession:
    Q9UDW3
    Secondary Accessions:
    • A8K9F6

    Protein attributes for ZMAT5 Gene

    Size:
    170 amino acids
    Molecular mass:
    19971 Da
    Quaternary structure:
    • Component of the U11/U12 snRNPs that are part of the U12-type spliceosome. Not found in the major spliceosome.

neXtProt entry for ZMAT5 Gene

Proteomics data for ZMAT5 Gene at MOPED

Post-translational modifications for ZMAT5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZMAT5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZMAT5 Gene

Domains for ZMAT5 Gene

Gene Families for ZMAT5 Gene

HGNC:
  • ZMAT :Zinc fingers, matrin-type

Protein Domains for ZMAT5 Gene

Suggested Antigen Peptide Sequences for ZMAT5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UDW3

UniProtKB/Swiss-Prot:

ZMAT5_HUMAN :
  • Q9UDW3
Similarity:
  • Contains 1 C3H1-type zinc finger.
genes like me logo Genes that share domains with ZMAT5: view

Function for ZMAT5 Gene

Gene Ontology (GO) - Molecular Function for ZMAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with ZMAT5: view

Phenotypes for ZMAT5 Gene

GenomeRNAi human phenotypes for ZMAT5:
genes like me logo Genes that share phenotypes with ZMAT5: view

miRNA for ZMAT5 Gene

miRTarBase miRNAs that target ZMAT5

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZMAT5 Gene

Localization for ZMAT5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZMAT5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZMAT5 Gene COMPARTMENTS Subcellular localization image for ZMAT5 gene
Compartment Confidence
nucleus 5
cytosol 3
extracellular 2

Gene Ontology (GO) - Cellular Components for ZMAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005689 U12-type spliceosomal complex IDA 15146077
genes like me logo Genes that share ontologies with ZMAT5: view

Pathways for ZMAT5 Gene

SuperPathways for ZMAT5 Gene

No Data Available

Interacting Proteins for ZMAT5 Gene

Gene Ontology (GO) - Biological Process for ZMAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IC 15146077
genes like me logo Genes that share ontologies with ZMAT5: view

No data available for Pathways by source for ZMAT5 Gene

Transcripts for ZMAT5 Gene

Unigene Clusters for ZMAT5 Gene

Zinc finger, matrin-type 5:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZMAT5

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZMAT5 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZMAT5 Gene

GeneLoc Exon Structure for
ZMAT5
ECgene alternative splicing isoforms for
ZMAT5

Expression for ZMAT5 Gene

mRNA expression in normal human tissues for ZMAT5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZMAT5 Gene

SOURCE GeneReport for Unigene cluster for ZMAT5 Gene Hs.713647

genes like me logo Genes that share expressions with ZMAT5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZMAT5 Gene

Orthologs for ZMAT5 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZMAT5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZMAT5 35
  • 99.61 (n)
  • 99.41 (a)
ZMAT5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZMAT5 35
  • 91.76 (n)
  • 94.12 (a)
ZMAT5 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZMAT5 35
  • 92.16 (n)
  • 94.12 (a)
ZMAT5 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zmat5 35
  • 90.78 (n)
  • 92.94 (a)
Zmat5 16
Zmat5 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZMAT5 36
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zmat5 35
  • 89.41 (n)
  • 93.53 (a)
chicken
(Gallus gallus)
Aves ZMAT5 35
  • 76.27 (n)
  • 73.53 (a)
ZMAT5 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZMAT5 36
  • 69 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.4221 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.7488 35
zmat5 35
  • 61.55 (n)
  • 58.9 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9091 35
zebrafish
(Danio rerio)
Actinopterygii zmat5 35
  • 57.59 (n)
  • 51.48 (a)
zmat5 36
  • 46 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG31922 36
  • 33 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToOne
Species with no ortholog for ZMAT5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZMAT5 Gene

ENSEMBL:
Gene Tree for ZMAT5 (if available)
TreeFam:
Gene Tree for ZMAT5 (if available)

Paralogs for ZMAT5 Gene

No data available for Paralogs for ZMAT5 Gene

Variants for ZMAT5 Gene

Sequence variations from dbSNP and Humsavar for ZMAT5 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs105311 -- 29,741,273(+) ATGTC(A/G)AGATA intron-variant
rs131258 -- 29,732,740(+) AAAAA(-/A)GTACA intron-variant
rs131259 -- 29,736,799(+) gcggg(C/T)ggatc intron-variant
rs131260 -- 29,736,975(+) atgag(A/C)caatt intron-variant
rs131261 -- 29,737,017(+) caaga(A/C)tccgt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZMAT5 Gene

Variant ID Type Subtype PubMed ID
dgv4953n71 CNV Loss 21882294
nsv515720 CNV Gain+Loss 19592680
nsv471194 CNV Gain 18288195
nsv471195 CNV Loss 18288195
nsv914967 CNV Loss 21882294

Relevant External Links for ZMAT5 Gene

HapMap Linkage Disequilibrium report
ZMAT5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZMAT5 Gene

Disorders for ZMAT5 Gene

No disorders were found for ZMAT5 Gene.

No data available for UniProtKB/Swiss-Prot for ZMAT5 Gene

Publications for ZMAT5 Gene

  1. The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. (PMID: 15146077) Will C.L. … Luehrmann R. (RNA 2004) 3 4
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZMAT5 Gene

Sources for ZMAT5 Gene

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