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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ZMAT4 Gene

protein-coding GIFtS: 41
GCID: GC08M040388

zinc finger, matrin-type 4

Search for ZMAT4
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Zinc Finger, Matrin-Type 4¹ ²
FLJ13842¹
Zinc Finger Matrin-Type Protein 4²
Zinc Finger, Matrin Type 4²

External Ids:	HGNC: 25844¹	Entrez Gene: 79698²	Ensembl: ENSG00000165061⁷	UniProtKB: Q9H898³

Export aliases for ZMAT4 gene to outside databases

Previous GC identifers: GC08M040508 GC08M038921

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000008.10 NC_018919.1 NT_167187.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ZMAT4 gene promoter:
ER-alpha AML1a CUTL1 Nkx2-5 POU6F1 (c2) C/EBPalpha POU2F1 POU2F1a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZMAT4 promoter sequence

Search SABiosciences Chromatin IP Primers for ZMAT4

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZMAT4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p11.21 Ensembl cytogenetic band: 8p11.21 HGNC cytogenetic band: 8p11.21

ZMAT4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZMAT4 gene location

GeneLoc information about chromosome 8 GeneLoc Exon Structure

GeneLoc location for GC08M040388: view genomic region (about GC identifiers)

Start:	40,388,109 bp from pter	End:	40,755,352 bp from pter
Size:	367,244 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZMAT4_HUMAN, Q9H898 (See protein sequence)

Recommended Name: Zinc finger matrin-type protein 4

Size: 229 amino acids; 25833 Da

Subcellular location: Nucleus (Potential)

Secondary accessions: Q8WUT8

Alternative splicing: 2 isoforms: Q9H898-1 Q9H898-2

Explore the universe of human proteins at neXtProt for ZMAT4: NX_Q9H898

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q9H898

ZMAT4 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (2 alternative transcripts):

NP_001129203.1 NP_078921.1

ENSEMBL proteins:

ENSP00000319785 ENSP00000297737 ENSP00000428423 ENSP00000430050 ENSP00000427918

ENSP00000429068

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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	--	--
GO:0005634	nucleus	IEA	--

ZMAT4 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ZMAT4 for domains About GeneDecksing

4 InterPro domains/families:

IPR015880 Znf_C2H2-like

IPR003604 Znf_U1

IPR007087 Znf_C2H2

IPR022755 Znf_C2H2_jaz

Graphical View of Domain Structure for InterPro Entry Q9H898

ProtoNet protein and cluster: Q9H898

UniProtKB/Swiss-Prot: ZMAT4_HUMAN, Q9H898

Similarity: Contains 4 matrin-type zinc fingers

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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In Situ Assay
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Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	--	--
GO:0003677	DNA binding	IEA	--
GO:0008270	zinc ion binding	IEA	--

ZMAT4 for ontologies About GeneDecksing

2 GenomeRNAi human phenotypes for ZMAT4:

Decreased BPV1 E2 protein expr

Increased HPV18 LCR reporter a

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ZMAT4

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Search CenterWatch for drugs/clinical trials and news about ZMAT4

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for ZMAT4 gene (2 alternative transcripts):

NM_001135731.1 NM_024645.2

Unigene Cluster for ZMAT4:

Zinc finger, matrin-type 4

Hs.591850 [show with all ESTs]

Unigene Representative Sequence: NM_024645

9 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000315769(uc003xns.3) ENST00000297737(uc003xnr.3) ENST00000519406

ENST00000519806 ENST00000518242 ENST00000523188 ENST00000523542 ENST00000522623

ENST00000523823

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		SwitchGear 3'UTR luciferase reporter plasmid: ZMAT4 3' UTR sequence

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Additional cDNA sequence:

AK023904.1 BC019598.1

3 DOTS entries:

DT.108380 DT.97838595 DT.99975931

24/41 AceView cDNA sequences (see all 41):

AI694423 BM696997 AA773635 BF513318 AA443144 AW197541 AW138024 NM_024645

BU738684 N80841 AA443143 AI918138 BF478133 BU726774 AI337165 AU141401

BI821509 BM661950 AK023904 AW206226 BM668027 AV724451 AL519652 AL519653

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZMAT4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image

ZMAT4 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 2 LifeMap Cells

Name

Category

Early limb mesenchymal cells (ELM cells) (Primary Cell)

Bone, Cartilage, Limb

Late limb mesenchymal cells (LLM cells) (Primary Cell)

Bone, Cartilage, Limb

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See ZMAT4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZMAT4

SOURCE GeneReport for Unigene cluster: Hs.591850

SABiosciences Custom PCR Arrays for ZMAT4

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for ZMAT4 gene from 3/11 species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	ZMAT4¹	zinc finger, matrin-type 4	76.61(n) 83.33(a)		426786 XM_424398.3 XP_424398.2
lizard (Anolis carolinensis)	Reptilia	ZMAT4⁶	--	72(a)	1 ↔ 1	GL343578.1(38578-69895)
zebrafish (Danio rerio)	Actinopterygii	zmat4a¹	zinc finger, matrin type 4a	70.27(n) 75.68(a)		100270739 XM_003198634.1 XP_003198682.1

ENSEMBL Gene Tree for ZMAT4 (if available)
TreeFam Gene Tree for ZMAT4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for ZMAT4 gene

KRCC1² ZNF346² ZMAT3² ZMAT1²

2 SIMAP similar genes for ZMAT4 using alignment to 4 protein entries: ZMAT4_HUMAN (see all proteins):

ZNF346 ZMAT1

ZMAT4 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 8 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs13274527^1,2	C,F,H,	--	40387791(+)	`ATTTCC/AACTAT`	2	--	int¹		16		NS EA NA WA	2220
rs186813808^1,2		--	40387926(+)	`TCTGAA/TTATTA`	2	--	int¹		0	--	--	--	--
rs116271953^1,2		--	40387934(+)	`TTATGG/CCCGGA`	2	--	int¹		1		WA	118
rs891405^1,2	C,A,,	--	40388028(+)	`TTAAAC/TACACA`	2	--	int¹		4		WA NA CSA	7
rs33988126^1,2	C,	--	40388070(+)	`CTTTA-/GGGCAT`	2	--	int¹		0	--	--	--	--
rs75983141^1,2	F,	--	40388267(+)	`TCCAAC/TCCCCT`	2	--	ut3¹		1		NA	120
rs192717823^1,2		--	40388296(+)	`GTGTGG/TCTCGT`	2	--	ut3¹		0	--	--	--	--
rs753133^1,2	C,F,O,A,H,	--	40388318(-)	`GCCTGC/AAGAGA`	2	--	ut3¹ ese³		29		NA EA NS WA	3160
rs184577511^1,2		--	40388428(+)	`GTGCAA/TTTCTG`	2	--	ut3¹		0	--	--	--	--
rs150731781^1,2		--	40388433(+)	`TTTCTC/GTGTCA`	2	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for ZMAT4 (40388109 - 40638109 bp, first 250kb of ZMAT4)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 12 variations for ZMAT4
6 CNVs: 82580 7686 95392 95391 39524 7685
6 Indels: 47537 11324 41594 95390 82579 65118

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

ZMAT4 for disorders About MalaCards

ZMAT4 for disorders About GeneDecksing

Human Genome Epidemiology (HuGE) Navigator: ZMAT4 (1 document)

Export disorders for ZMAT4 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZMAT4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZMAT4)

Utopia: connect your pdf to the dynamic
world of online information

Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{1, 3} Strausberg R.L....Marra M.A. (2002)
The association between the copy-number variations of ZMAT4 and hematological malignancy. (PubMed id 21269563)¹ Wan J....Zhang W. (2011)
Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)¹ OlA!h J....OvA!di J. (2011)
Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PubMed id 17903298)¹ Meigs J.B....Dupuis J. (2007)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 79698	HGNC: 25844	AceView: FLJ13842	Ensembl:ENSG00000165061	euGenes: HUgn79698
ECgene: ZMAT4	H-InvDB: ZMAT4

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ZMAT4	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZMAT4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for ZMAT4 gene:
Search GeneIP for patents involving ZMAT4

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes ZMAT4 gene at Home site.

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ZMAT4 Gene

zinc finger, matrin-type 4

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ZMAT4 Gene

zinc finger, matrin-type 4

Aliasesfor ZMAT4 gene

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Genomic Viewsfor ZMAT4 gene

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Protein Domains /Familiesfor ZMAT4 gene

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Other Databases showing ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene

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for ZMAT4 gene