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Aliases for ZMAT2 Gene

Aliases for ZMAT2 Gene

  • Zinc Finger, Matrin-Type 2 2 3
  • Zinc Finger Matrin-Type Protein 2 3
  • Zinc Finger, Matrin Type 2 3
  • Ptg-12 3
  • HSNU23 3
  • Snu23 3

External Ids for ZMAT2 Gene

Summaries for ZMAT2 Gene

GeneCards Summary for ZMAT2 Gene

ZMAT2 (Zinc Finger, Matrin-Type 2) is a Protein Coding gene. Among its related pathways are Spliceosome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZMAT2 Gene

Genomics for ZMAT2 Gene

Genomic Location for ZMAT2 Gene

Start:
140,698,680 bp from pter
End:
140,706,676 bp from pter
Size:
7,997 bases
Orientation:
Plus strand

Genomic View for ZMAT2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZMAT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZMAT2 Gene

Regulatory Elements for ZMAT2 Gene

Proteins for ZMAT2 Gene

  • Protein details for ZMAT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NC0-ZMAT2_HUMAN
    Recommended name:
    Zinc finger matrin-type protein 2
    Protein Accession:
    Q96NC0
    Secondary Accessions:

    Protein attributes for ZMAT2 Gene

    Size:
    199 amino acids
    Molecular mass:
    23612 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZMAT2 Gene

Proteomics data for ZMAT2 Gene at MOPED

Post-translational modifications for ZMAT2 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys8

Other Protein References for ZMAT2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZMAT2 Gene

Domains for ZMAT2 Gene

Gene Families for ZMAT2 Gene

HGNC:
  • ZMAT :Zinc fingers, matrin-type

Protein Domains for ZMAT2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

ZMAT2_HUMAN
Similarity:
  • Contains 1 matrin-type zinc finger.:
    • Q96NC0
genes like me logo Genes that share domains with ZMAT2: view

Function for ZMAT2 Gene

Gene Ontology (GO) - Molecular Function for ZMAT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 23275563
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with ZMAT2: view
genes like me logo Genes that share phenotypes with ZMAT2: view

miRNA for ZMAT2 Gene

miRTarBase miRNAs that target ZMAT2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZMAT2 Gene

Localization for ZMAT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZMAT2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZMAT2 Gene COMPARTMENTS Subcellular localization image for ZMAT2 gene
Compartment Confidence
nucleus 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ZMAT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZMAT2: view

Pathways for ZMAT2 Gene

SuperPathways for ZMAT2 Gene

Superpath Contained pathways
1 Spliceosome
genes like me logo Genes that share pathways with ZMAT2: view

Pathways by source for ZMAT2 Gene

1 KEGG pathway for ZMAT2 Gene

Gene Ontology (GO) - Biological Process for ZMAT2 Gene

None

Transcripts for ZMAT2 Gene

mRNA/cDNA for ZMAT2 Gene

Unigene Clusters for ZMAT2 Gene

Zinc finger, matrin-type 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZMAT2 Gene

No ASD Table

Relevant External Links for ZMAT2 Gene

GeneLoc Exon Structure for
ZMAT2
ECgene alternative splicing isoforms for
ZMAT2

Expression for ZMAT2 Gene

mRNA expression in normal human tissues for ZMAT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZMAT2 Gene

SOURCE GeneReport for Unigene cluster for ZMAT2 Gene Hs.350194

genes like me logo Genes that share expressions with ZMAT2: view

Orthologs for ZMAT2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ZMAT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZMAT2 36
  • 99.83 (n)
  • 100 (a)
ZMAT2 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZMAT2 36
  • 95.14 (n)
  • 100 (a)
ZMAT2 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZMAT2 36
  • 95.81 (n)
  • 100 (a)
ZMAT2 37
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zmat2 36
  • 91.79 (n)
  • 100 (a)
Zmat2 16
Zmat2 37
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 99 (a)
OneToMany
-- 37
  • 99 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ZMAT2 37
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zmat2 36
  • 93.63 (n)
  • 99.5 (a)
chicken
(Gallus gallus)
Aves ZMAT2 36
  • 86.43 (n)
  • 97.99 (a)
ZMAT2 37
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZMAT2 37
  • 98 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.3637 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6883 36
zmat2 36
  • 77.55 (n)
  • 92.96 (a)
zebrafish
(Danio rerio)
Actinopterygii wufc30d10 36
zmat2 36
  • 77.95 (n)
  • 91.41 (a)
zmat2 37
  • 90 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006245 36
  • 63.99 (n)
  • 64.17 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11586 36
  • 67.03 (n)
  • 70.65 (a)
CG11586 37
  • 65 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea snu-23 37
  • 44 (a)
OneToOne
ZK686.4 36
  • 56.07 (n)
  • 50.77 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.4536 36
soybean
(Glycine max)
eudicotyledons Gma.8365 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G05760 36
  • 57.07 (n)
  • 53.03 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.5951 36
rice
(Oryza sativa)
Liliopsida Os03g0831900 36
  • 58.25 (n)
  • 54.74 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1075 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9251 37
  • 65 (a)
OneToOne
Species with no ortholog for ZMAT2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ZMAT2 Gene

ENSEMBL:
Gene Tree for ZMAT2 (if available)
TreeFam:
Gene Tree for ZMAT2 (if available)

Paralogs for ZMAT2 Gene

No data available for Paralogs for ZMAT2 Gene

Variants for ZMAT2 Gene

Sequence variations from dbSNP and Humsavar for ZMAT2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs11410 -- 140,706,497(-) CATAA(A/T)TCTTC utr-variant-3-prime
rs14803 -- 140,706,526(-) CAAAA(A/G)CCTGC utr-variant-3-prime
rs702395 -- 140,707,092(-) tcagg(A/G)gtttg downstream-variant-500B
rs801166 -- 140,702,317(-) GACCA(C/T)TCCTA intron-variant
rs801167 -- 140,701,838(-) AGGAA(A/G)AAATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZMAT2 Gene

Variant ID Type Subtype PubMed ID
nsv830508 CNV Loss 17160897

Relevant External Links for ZMAT2 Gene

HapMap Linkage Disequilibrium report
ZMAT2

Disorders for ZMAT2 Gene

No disorders were found for ZMAT2 Gene.

No data available for UniProtKB/Swiss-Prot for ZMAT2 Gene

Publications for ZMAT2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Nucleolar proteome dynamics. (PMID: 15635413) Andersen J.S. … Mann M. (Nature 2005) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for ZMAT2 Gene

Sources for ZMAT2 Gene

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