Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZKSCAN1 Gene

Aliases for ZKSCAN1 Gene

  • Zinc Finger With KRAB And SCAN Domains 1 2 3
  • ZNF36 3 4 6
  • KOX18 3 4 6
  • Zinc Finger Protein 36 (KOX 18) 2 3
  • Zinc Finger Protein KOX18 3 4
  • Zinc Finger Protein 139 3 4
  • ZNF139 3 4
  • Zinc Finger Protein With KRAB And SCAN Domains 1 3
  • Zinc Finger Protein 36 4
  • 9130423L19Rik 3
  • ZSCAN33 3
  • PHZ-37 3

External Ids for ZKSCAN1 Gene

Previous HGNC Symbols for ZKSCAN1 Gene

  • ZNF139
  • ZNF36

Previous GeneCards Identifiers for ZKSCAN1 Gene

  • GC07P099261
  • GC07P099451
  • GC07P099616
  • GC07P094248

Summaries for ZKSCAN1 Gene

Entrez Gene Summary for ZKSCAN1 Gene

  • The ZKSCAN1 gene encodes a transcriptional regulator of the KRAB (Kruppel-associated box) subfamily of zinc finger proteins, which contain repeated Cys2-His2 (C2H2) zinc finger domains that are connected by conserved sequences, called H/C links (summarized by Tommerup and Vissing, 1995 [PubMed 7557990]). Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both normal and abnormal cellular proliferation and differentiation. See ZNF91 (MIM 603971) for general information on zinc finger proteins.[supplied by OMIM, Jul 2010]

GeneCards Summary for ZKSCAN1 Gene

ZKSCAN1 (Zinc Finger With KRAB And SCAN Domains 1) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF396.

UniProtKB/Swiss-Prot for ZKSCAN1 Gene

  • May be involved in transcriptional regulation

Gene Wiki entry for ZKSCAN1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZKSCAN1 Gene

Genomics for ZKSCAN1 Gene

Regulatory Elements for ZKSCAN1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZKSCAN1 Gene

Start:
100,015,572 bp from pter
End:
100,045,178 bp from pter
Size:
29,607 bases
Orientation:
Plus strand

Genomic View for ZKSCAN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZKSCAN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZKSCAN1 Gene

Proteins for ZKSCAN1 Gene

  • Protein details for ZKSCAN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P17029-ZKSC1_HUMAN
    Recommended name:
    Zinc finger protein with KRAB and SCAN domains 1
    Protein Accession:
    P17029
    Secondary Accessions:
    • A4D294
    • P52745
    • Q2M1U1
    • Q8TBW5
    • Q8TEK7

    Protein attributes for ZKSCAN1 Gene

    Size:
    563 amino acids
    Molecular mass:
    63630 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC50264.1; Type=Frameshift; Positions=241; Evidence={ECO:0000305};

neXtProt entry for ZKSCAN1 Gene

Proteomics data for ZKSCAN1 Gene at MOPED

Post-translational modifications for ZKSCAN1 Gene

  • Ubiquitination at Lys181 and Lys478
  • Modification sites at PhosphoSitePlus

Other Protein References for ZKSCAN1 Gene

No data available for DME Specific Peptides for ZKSCAN1 Gene

Domains for ZKSCAN1 Gene

Gene Families for ZKSCAN1 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Graphical View of Domain Structure for InterPro Entry

P17029

UniProtKB/Swiss-Prot:

ZKSC1_HUMAN :
  • P17029
Domain:
  • Contains 1 KRAB domain.
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 6 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZKSCAN1: view

Function for ZKSCAN1 Gene

Molecular function for ZKSCAN1 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZKSCAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity NAS 7557990
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZKSCAN1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZKSCAN1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZKSCAN1 Gene

Localization for ZKSCAN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZKSCAN1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZKSCAN1 Gene COMPARTMENTS Subcellular localization image for ZKSCAN1 gene
Compartment Confidence
nucleus 5
mitochondrion 4

Gene Ontology (GO) - Cellular Components for ZKSCAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus NAS 7557990
genes like me logo Genes that share ontologies with ZKSCAN1: view

Pathways for ZKSCAN1 Gene

SuperPathways for ZKSCAN1 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZKSCAN1: view

Pathways by source for ZKSCAN1 Gene

2 Reactome pathways for ZKSCAN1 Gene

Gene Ontology (GO) - Biological Process for ZKSCAN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated NAS 7557990
genes like me logo Genes that share ontologies with ZKSCAN1: view

Compounds for ZKSCAN1 Gene

(1) HMDB Compounds for ZKSCAN1 Gene

Compound Synonyms Cas Number PubMed IDs
Zinc
  • Zinc
7440-66-6
genes like me logo Genes that share compounds with ZKSCAN1: view

Transcripts for ZKSCAN1 Gene

mRNA/cDNA for ZKSCAN1 Gene

Unigene Clusters for ZKSCAN1 Gene

Zinc finger with KRAB and SCAN domains 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZKSCAN1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZKSCAN1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZKSCAN1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9a · 9b
SP1: -
SP2: - -
SP3: -
SP4: -

Relevant External Links for ZKSCAN1 Gene

GeneLoc Exon Structure for
ZKSCAN1
ECgene alternative splicing isoforms for
ZKSCAN1

Expression for ZKSCAN1 Gene

mRNA expression in normal human tissues for ZKSCAN1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZKSCAN1 Gene

SOURCE GeneReport for Unigene cluster for ZKSCAN1 Gene Hs.615360

genes like me logo Genes that share expressions with ZKSCAN1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZKSCAN1 Gene

Orthologs for ZKSCAN1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZKSCAN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZKSCAN1 35
  • 99.76 (n)
  • 99.64 (a)
ZKSCAN1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZKSCAN1 35
  • 87.69 (n)
  • 90.94 (a)
ZKSCAN1 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZKSCAN1 35
  • 89.88 (n)
  • 93.61 (a)
ZKSCAN1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zkscan1 35
  • 86.07 (n)
  • 90.36 (a)
Zkscan1 16
Zkscan1 36
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZKSCAN1 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zkscan1 35
  • 85.8 (n)
  • 90.02 (a)
Species with no ortholog for ZKSCAN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZKSCAN1 Gene

ENSEMBL:
Gene Tree for ZKSCAN1 (if available)
TreeFam:
Gene Tree for ZKSCAN1 (if available)

Paralogs for ZKSCAN1 Gene

Selected SIMAP similar genes for ZKSCAN1 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for ZKSCAN1 Gene

genes like me logo Genes that share paralogs with ZKSCAN1: view

Variants for ZKSCAN1 Gene

Sequence variations from dbSNP and Humsavar for ZKSCAN1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs9231 -- 100,041,544(-) AAAAT(G/T)GACCA utr-variant-3-prime, intron-variant
rs1015538 -- 100,028,412(-) cttgg(C/T)ctccc intron-variant
rs1060544 -- 100,015,853(+) GAGTC(C/T)ATGCC intron-variant
rs1128879 -- 100,041,648(+) CTCTT(C/T)TGAGT utr-variant-3-prime, intron-variant
rs1133790 -- 100,035,359(+) TGGAA(C/T)GTCAG utr-variant-3-prime, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZKSCAN1 Gene

Variant ID Type Subtype PubMed ID
nsv433391 CNV Gain 18776910
esv23518 CNV Gain 19812545
esv32694 CNV Loss 17666407
nsv469687 CNV Loss 16826518
esv2734888 CNV Deletion 23290073
nsv510966 CNV Complex 20534489
nsv819817 CNV Loss 19587683

Relevant External Links for ZKSCAN1 Gene

HapMap Linkage Disequilibrium report
ZKSCAN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZKSCAN1 Gene

Disorders for ZKSCAN1 Gene

(2) University of Copenhagen DISEASES for ZKSCAN1 Gene

genes like me logo Genes that share disorders with ZKSCAN1: view

No data available for UniProtKB/Swiss-Prot for ZKSCAN1 Gene

Publications for ZKSCAN1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Multiple genes encoding zinc finger domains are expressed in human T cells. (PMID: 2288909) Thiesen H.-J. (New Biol. 1990) 3 4
  3. Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders. (PMID: 7557990) Tommerup N. … Vissing H. (Genomics 1995) 3 4
  4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  5. Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones. (PMID: 12693554) Jikuya H. … Ohara O. (DNA Res. 2003) 3 4

Products for ZKSCAN1 Gene

Sources for ZKSCAN1 Gene

Back to Top

Content