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Aliases for ZIK1 Gene

Aliases for ZIK1 Gene

  • Zinc Finger Protein Interacting With K Protein 1 2 3 5
  • Zinc Finger Protein 762 3 4
  • ZNF762 3 4
  • Zinc Finger Protein Interacting With K Protein 1 Homolog (Mouse) 2
  • Zinc Finger Protein Interacting With K Protein 1 Homolog 3
  • Zinc Finger Protein Interacting With Ribonucleoprotein K 3

External Ids for ZIK1 Gene

Previous GeneCards Identifiers for ZIK1 Gene

  • GC19P062791
  • GC19P058095
  • GC19P054408

Summaries for ZIK1 Gene

GeneCards Summary for ZIK1 Gene

ZIK1 (Zinc Finger Protein Interacting With K Protein 1) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF416.

UniProtKB/Swiss-Prot for ZIK1 Gene

  • May be a transcriptional repressor.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZIK1 Gene

Genomics for ZIK1 Gene

Regulatory Elements for ZIK1 Gene

Enhancers for ZIK1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G056594 1 ENCODE 27.6 -983.0 -983016 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF17 ENSG00000269696 ZNF549 ZNF773 ZNF543 U2AF2 ZFP28 ZNF667 ZNF470 FIZ1
GH19G058181 1.1 ENCODE 22.6 +604.8 604781 2.5 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF134 ZNF549 ZNF606 ZNF773 ZNF17 ZNF418 ZNF550 ZNF417 ZNF256 ZNF543
GH19G057583 0.9 ENCODE 24.4 +5.5 5517 1.4 TBP CBX3 ARID4B ZNF76 RAD21 ZBTB40 ZEB1 YY1 ETS1 GLIS2 ZNF549 ZNF17 ZIK1 LOC100128398 ZNF324B MZF1 ZSCAN22 ZNF606 ZNF544 ZNF551
GH19G058517 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +941.3 941253 4.9 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF324B ZNF549 CENPBD1P1 MZF1 ZNF134 ZNF606 LOC100128398 ZNF324 ZBTB45 ZNF418
GH19G058553 1.4 ENCODE dbSUPER 14.3 +978.7 978657 7.2 CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZFP41 ZNF606 ZNF417 TRIM28 MZF1-AS1 ZNF550 ZNF134 ZNF584 CENPBD1P1 ZNF776 ZNF551
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZIK1 on UCSC Golden Path with GeneCards custom track

Promoters for ZIK1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111809 344 1200 PKNOX1 ATF1 CREB3L1 ZNF133 ARID4B SIN3A BRCA1 ZNF48 YY1 ETS1

Genomic Location for ZIK1 Gene

Chromosome:
19
Start:
57,578,456 bp from pter
End:
57,593,888 bp from pter
Size:
15,433 bases
Orientation:
Plus strand

Genomic View for ZIK1 Gene

Genes around ZIK1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZIK1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZIK1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZIK1 Gene

Proteins for ZIK1 Gene

  • Protein details for ZIK1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3SY52-ZIK1_HUMAN
    Recommended name:
    Zinc finger protein interacting with ribonucleoprotein K
    Protein Accession:
    Q3SY52
    Secondary Accessions:
    • O43339
    • Q3SY51
    • Q3SY53

    Protein attributes for ZIK1 Gene

    Size:
    487 amino acids
    Molecular mass:
    54786 Da
    Quaternary structure:
    • Interacts with HNRPK.

    Alternative splice isoforms for ZIK1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZIK1 Gene

Post-translational modifications for ZIK1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZIK1 Gene

Domains & Families for ZIK1 Gene

Gene Families for ZIK1 Gene

Protein Domains for ZIK1 Gene

Suggested Antigen Peptide Sequences for ZIK1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3SY52

UniProtKB/Swiss-Prot:

ZIK1_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZIK1: view

Function for ZIK1 Gene

Molecular function for ZIK1 Gene

UniProtKB/Swiss-Prot Function:
May be a transcriptional repressor.

Gene Ontology (GO) - Molecular Function for ZIK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZIK1: view
genes like me logo Genes that share phenotypes with ZIK1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZIK1 Gene

Localization for ZIK1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZIK1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZIK1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZIK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZIK1: view

Pathways & Interactions for ZIK1 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZIK1: view

Pathways by source for ZIK1 Gene

2 Reactome pathways for ZIK1 Gene

Gene Ontology (GO) - Biological Process for ZIK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZIK1: view

No data available for SIGNOR curated interactions for ZIK1 Gene

Transcripts for ZIK1 Gene

Unigene Clusters for ZIK1 Gene

Zinc finger protein interacting with K protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZIK1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d
SP1: -
SP2: - -
SP3:
SP4: - - -
SP5: -
SP6: - - - - -

Relevant External Links for ZIK1 Gene

GeneLoc Exon Structure for
ZIK1
ECgene alternative splicing isoforms for
ZIK1

Expression for ZIK1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZIK1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of ZIK1 Gene:

ZIK1

SOURCE GeneReport for Unigene cluster for ZIK1 Gene:

Hs.454830

mRNA Expression by UniProt/SwissProt for ZIK1 Gene:

Q3SY52-ZIK1_HUMAN
Tissue specificity: Expressed at high levels in gastric glands, and at low levels in colon and small intestine. Silenced through promoter methylation in gastric glands with intestinal metaplasia.
genes like me logo Genes that share expression patterns with ZIK1: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZIK1 Gene

Orthologs for ZIK1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZIK1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZIK1 34 35
  • 99.45 (n)
mouse
(Mus musculus)
Mammalia Zik1 34 16 35
  • 79.8 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 48 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 42 (a)
ManyToMany
Species where no ortholog for ZIK1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZIK1 Gene

ENSEMBL:
Gene Tree for ZIK1 (if available)
TreeFam:
Gene Tree for ZIK1 (if available)

Paralogs for ZIK1 Gene

(525) SIMAP similar genes for ZIK1 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for ZIK1 Gene

genes like me logo Genes that share paralogs with ZIK1: view

Variants for ZIK1 Gene

Sequence variations from dbSNP and Humsavar for ZIK1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000161227 -- 57,587,399(+) TTCCA(-/GT)GTGAT intron-variant, upstream-variant-2KB
rs1000258902 -- 57,593,892(+) AAGAC(-/TT)ATGTT downstream-variant-500B
rs1000293520 -- 57,593,560(+) GAATG(C/T)GTCAC utr-variant-3-prime
rs1000854710 -- 57,592,242(+) TGTCA(C/T)GCAGA utr-variant-3-prime
rs1000898301 -- 57,588,817(+) CCTGC(C/T)GCCCA intron-variant, upstream-variant-2KB

Variation tolerance for ZIK1 Gene

Residual Variation Intolerance Score: 70.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.24% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZIK1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZIK1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZIK1 Gene

Disorders for ZIK1 Gene

Relevant External Links for ZIK1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZIK1

No disorders were found for ZIK1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZIK1 Gene

Publications for ZIK1 Gene

  1. Methylation of multiple genes in gastric glands with intestinal metaplasia: a disorder with polyclonal origins. (PMID: 17071588) Mihara M. … Ushijima T. (Am. J. Pathol. 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZIK1 Gene

Sources for ZIK1 Gene

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