ZHX3 Gene
protein-coding GIFtS: 50
GCID: GC20M039807
|
|
zinc fingers and homeoboxes 3(Previous name: triple homeobox 1 )
(Previous symbol: TIX1)
| |
Aliases
for ZHX3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Fingers And Homeoboxes 31 2 | | Triple Homeobox Protein 12 3 | | TIX11 2 3 | | Zinc Finger And Homeodomain Protein 32 3 | | KIAA03951 3 5 | | Zinc Fingers And Homeoboxes Protein 32 | | Triple Homeobox 11 2 | | |
Export aliases for ZHX3 gene to outside databasesPrevious GC identifers: GC20M040492 GC20M039240 GC20M036545 |
Summaries
for ZHX3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ZHX3:
This gene encodes a member of the zinc fingers and homeoboxes (ZHX) gene family. The encoded protein contains twoC2H2-type zinc fingers and five homeodomains and forms a dimer with itself or with zinc fingers and homeoboxes familymember 1. In the nucleus, the dimerized protein interacts with the A subunit of the ubiquitous transcription factornuclear factor-Y and may function as a transcriptional repressor. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: ZHX3_HUMAN, Q9H4I2Function: Acts as a transcriptional repressor. Involved in the early stages of mesenchymal stem cell (MSC) osteogenicdifferentiation. Is a regulator of podocyte gene expression during primary glomerula disease. Binds to promoter DNA
Gene Wiki entry for ZHX3
|
Genomic Views
for ZHX3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000020.10 NC_018931.1 NT_011362.10
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZHX3 gene promoter:
AML1a p300 AP-2gamma C/EBPalpha E2F E2F-1 AP-2beta AP-2alpha AP-2alphaA
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZHX3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZHX3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 20q12 Ensembl cytogenetic band: 20q12 HGNC cytogenetic band: 20q12ZHX3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M039807: view genomic region
(about GC identifiers)
Start:
|
39,807,088 bp from pter |
End:
|
39,946,312 bp from pter |
Size:
|
139,225 bases |
Orientation:
|
minus strand |
|
Proteins
for ZHX3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZHX3_HUMAN, Q9H4I2 (See
protein sequence)Recommended Name: Zinc fingers and homeoboxes protein 3 Size: 956 amino acids; 104658 Da
Subunit: Homodimer (via homeobox domain). Also forms heterodimers with ZHX1 and ZHX2. Heterodimerization with ZHX1 is aprerequisite for repressor activity. Interacts with NFYA
Subcellular location: Nucleus
Sequence caution: Sequence=BAA23691.3; Type=Erroneous initiation;
2 PDB 3D structures from  and Proteopedia  for ZHX3:2DA5 (3D)
2DN0 (3D)
Secondary accessions: E1P5W5 O43145Explore the universe of human proteins at neXtProt for ZHX3: NX_Q9H4I2
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H4I2
ZHX3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_055850.1
ENSEMBL proteins: ENSP00000405421 ENSP00000312222 ENSP00000453647 ENSP00000452965 ENSP00000453548 ENSP00000454208 ENSP00000443783 ENSP00000454006 ENSP00000453310 ENSP00000415498 ENSP00000399433 ENSP00000362358 ENSP00000403048 ENSP00000401852 ENSP00000400441 ENSP00000362360 ENSP00000442290
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
ZHX3 for ontologies About GeneDecksing
ZHX3 Antibody Products:
Assay Products for ZHX3: |
Protein
Domains /
Families
for ZHX3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZHX3 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9H4I2ProtoNet protein and cluster: Q9H4I2 UniProtKB/Swiss-Prot: ZHX3_HUMAN, Q9H4I2Similarity: Belongs to the ZHX familySimilarity: Contains 2 C2H2-type zinc fingersSimilarity: Contains 5 homeobox DNA-binding domains |
Function
for ZHX3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: ZHX3_HUMAN, Q9H4I2Function: Acts as a transcriptional repressor. Involved in the early stages of mesenchymal stem cell (MSC) osteogenicdifferentiation. Is a regulator of podocyte gene expression during primary glomerula disease. Binds to promoter DNAInduction: Up-regulated during osteogenic differentiation of mesenchymal stem cells
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZHX3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZHX3 |
Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table
ZHX3 for ontologies About GeneDecksing
|
Pathways & Interactions
for ZHX3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZHX3
STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)
5/7 Interacting proteins for ZHX3 (Q9H4I22, 3 ENSP000003122224) via UniProtKB, MINT, STRING, and/or I2D (see all 7)About this table
Gene Ontology (GO): 5 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
IEA | -- | | GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0030154 | cell differentiation |
IEA | -- | | GO:0045669 | positive regulation of osteoblast differentiation |
IMP | -- | | GO:0045892 | negative regulation of transcription, DNA-dependent |
IDA | 12659632 |
ZHX3 for ontologies About GeneDecksing
|
Drugs & Compounds
for ZHX3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZHX3
Search CenterWatch for drugs/clinical trials and news about ZHX3
|
Transcripts
for ZHX3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZHX3 gene: NM_015035.3 Unigene Cluster for ZHX3: Zinc fingers and homeoboxes 3 Hs.380133 [show with all ESTs]Unigene Representative Sequence: NM_01503518/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25): ENST00000421422 ENST00000309060(uc002xjv.1 uc002xju.1) ENST00000560364
ENST00000559234 ENST00000557816 ENST00000558993 ENST00000558642 ENST00000544979
ENST00000560361 ENST00000559436 ENST00000432768(uc002xjw.1) ENST00000441102
ENST00000373261 ENST00000436440 ENST00000436099 ENST00000419740 ENST00000487057
ENST00000561291
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZHX3 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZHX3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ZHX3 (NM_015035) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZHX3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZHX3 |
Additional cDNA sequence: AB007855.3 AB081948.1 AK090560.1 AK097523.1 AK122905.1 AK292415.1 BC020258.1 BC047070.1 BC068569.1 16 DOTS entries: DT.417204 DT.95364629 DT.92402781 DT.100819052 DT.95179651 DT.100773840 DT.95178573 DT.91652627 DT.91682894 DT.120812045 DT.120812077 DT.120812096 DT.40300516 DT.97794675 DT.120812097 DT.97779903 24/238 AceView cDNA sequences (see all 238): AK090560 BM983237 BM905948 AB007855 AW051444 N51753 AI671438 F02890 BF437473 BU787623 BQ956255 CK902620 AW300084 AI312760 BQ010281 AI698184 BC047070 AI671198 CD557674 CR598674 AA195049 Z39620 BU728397 AI393994
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ZHX3 (see all 6) About this scheme
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | - | | | | | | | | - | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | - | | - | | - | | | | | | | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for ZHX3
|
Expression
for ZHX3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZHX3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCCAGGTGTG
About this image
See ZHX3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZHX3
SOURCE GeneReport for Unigene cluster: Hs.380133
UniProtKB/Swiss-Prot: ZHX3_HUMAN, Q9H4I2Tissue specificity: Widely expressed. High expression in kidney. Expressed during osteogenic differentiation
SABiosciences Custom PCR Arrays for ZHX3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZHX3
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZHX3 |
Orthologs
for ZHX3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ZHX3 gene from 4/12 species (see all 12) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
ZHX31 |
zinc fingers and homeoboxes 3 |
68.14(n)
66.27(a) |
|
419176 XM_417355.3 XP_417355.3 |
lizard
(Anolis carolinensis) |
Reptilia |
ZHX36 |
-- |
60(a) |
1 ↔ 1 |
GL343291.1(957809-960815) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.33222 |
Xenopus laevis transcribed sequence with weak similarity more |
79.5(n) |
|
BJ621192.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
tix12 |
triple homeobox 1 |
73.61(n) |
|
386659 AY311506.1 |
ENSEMBL Gene Tree for ZHX3 (if available)
TreeFam Gene Tree for ZHX3 (if available) |
Paralogs
for ZHX3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZHX3 gene
- ENSG000002601752 ZHX22 HOMEZ2 ZHX12
2 SIMAP similar genes for ZHX3 using alignment to 13 protein entries: ZHX3_HUMAN (see all proteins):ZHX2 ZHX1
ZHX3 for paralogs About GeneDecksing
|
Genomic Variants
for ZHX3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 20 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZHX3 (39807088 - 39946312 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 8 variations for ZHX3
3 CNVs: 67688 35918 5138
5 Indels: 90565 79201 79200 90564 67689
Human Gene Mutation Database (HGMD): ZHX3
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZHX3 |
|
Disorders
/ Diseases
for ZHX3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZHX3 for disorders About GeneDecksing
OMIM gene information: 609598
OMIM disorders: --
2  diseases for ZHX3: About MalaCardsnephrotic syndrome ataxia
Export disorders for ZHX3 gene to outside databases
|
Publications
for ZHX3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZHX3 gene, integrated from 9 sources (see all 19):
(articles sorted by number of sources associating them with ZHX3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Prediction of the coding sequences of unidentified human genes. VIII. 78 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9455477)1, 2, 3 Ishikawa K....Ohara O. (1997)
- Impact of zinc fingers and homeoboxes 3 on the regula tion of mesenchymal stem cell osteogenic differentiation. (PubMed id 21174497)1, 2 Suehiro F....Kato Y. (2011)
- Analysis of zinc-fingers and homeoboxes (ZHX)-1-interacting proteins: molecular cloning and characterization of a member of the ZHX family, ZHX3. (PubMed id 12659632)1, 2 Yamada K.... Miyamoto K. (2003)
- Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)1, 2 Nakajima D.... Nagase T. (2002)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
- The mouse zinc-fingers and homeoboxes (ZHX) family; ZHX2 forms a heterodimer with ZHX3. (PubMed id 14659886)1, 9 Kawata H....Miyamoto K. (2003)
- ZHX proteins regulate podocyte gene expression during the development of nephrotic syndrome. (PubMed id 17056598)1, 9 Liu G....Chugh S.S. (2006)
- Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
- Complementary quantitative proteomics reveals that tr anscription factor AP-4 mediates E-box-dependent complex formation for transcri ptional repression of HDM2. (PubMed id 19505873)1 Ku W.C....Chen Y.J. (2009)
- Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
|
External Searches for ZHX3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZHX3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZHX3 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing ZHX3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZHX3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZHX3 gene:
Search GeneIP for patents involving ZHX3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZHX3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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| |  |  |  |  | | | | |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZHX3 |
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