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ZG16B Gene

protein-coding   GIFtS: 50
GCID: GC16P002881

Zymogen Granule Protein 16B

(Previous name: zymogen granule protein 16 homolog B (rat))
  See ZG16B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zymogen Granule Protein 16B1 2     PAUF2
Jacalin-Like Lectin Domain Containing 21 2     PRO15672
Zymogen Granule Protein 16 Homolog B (Rat)1     Endocrine And Exocrine Protein2
EECP2     Pancreatic Adenocarcinoma Upregulated Factor2
HRPE7732     Zymogen Granule Protein 16 Homolog B2
JCLN22     

External Ids:    HGNC: 304561   Entrez Gene: 1242202   Ensembl: ENSG000001620787   UniProtKB: Q96DA03   

Export aliases for ZG16B gene to outside databases

Previous GC identifer: GC16P002821


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZG16B Gene:
ZG16B (zymogen granule protein 16B) is a protein-coding gene. Diseases associated with ZG16B include pancreatic ductal adenocarcinoma, and adenocarcinoma. An important paralog of this gene is ZG16.

Gene Wiki entry for ZG16B (LOC124220) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NC_018927.2  NT_010393.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZG16B gene promoter:
         RORalpha1   NF-1   AP-1   NRSF form 1   NRSF form 2   En-1   Arnt   Roaz   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ZG16B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZG16B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

ZG16B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZG16B gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P002881:  view genomic region     (about GC identifiers)

Start:
2,880,170 bp from pter      End:
2,888,967 bp from pter
Size:
8,798 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZG16B_HUMAN, Q96DA0 (See protein sequence)
Recommended Name: Zymogen granule protein 16 homolog B precursor  
Size: 208 amino acids; 22739 Da
Caution: It is uncertain whether Met-1, Met-13 or Met-31 is the initiator
Sequence caution: Sequence=AAQ89380.1; Type=Erroneous initiation; Sequence=BAG34753.1; Type=Erroneous initiation;
1 PDB 3D structure from and Proteopedia for ZG16B:
3AQG (3D)    
Secondary accessions: A6NIY1 B2R4F6 Q6UW28

Explore the universe of human proteins at neXtProt for ZG16B: NX_Q96DA0

Explore proteomics data for ZG16B at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn197
  • Modification sites at PhosphoSitePlus

  • See ZG16B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_660295.2  
    ENSEMBL proteins: 
     ENSP00000371715   ENSP00000460793   ENSP00000458847   ENSP00000461740  

    ZG16B Human Recombinant Protein Products:

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    Novus Biologicals ZG16B Protein
    Novus Biologicals ZG16B Lysates
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for ZG16B

     
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    antibodies-online proteins for ZG16B 

     
    antibodies-online peptides for ZG16B

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    antibodies-online antibodies for ZG16B (12 products) 

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    antibodies-online kits for ZG16B (5 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR001229 Mannose-bd_lectin

    Graphical View of Domain Structure for InterPro Entry Q96DA0

    ProtoNet protein and cluster: Q96DA0

    UniProtKB/Swiss-Prot: ZG16B_HUMAN, Q96DA0
    Similarity: Belongs to the jacalin lectin family


    Find genes that share domains with ZG16B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    Find genes that share ontologies with ZG16B           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZG16B:
     Increased gamma-H2AX phosphory 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZG16B

    miRNA
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    miRTarBase miRNAs that target ZG16B:
    hsa-mir-335-5p (MIRT019177)

    Block miRNA regulation of human, mouse, rat ZG16B using miScript Target Protectors
    2 qRT-PCR Assays for microRNAs that regulate ZG16B:
    hsa-miR-298 hsa-miR-3165
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZG16B_HUMAN, Q96DA0: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    cytosol1
    lysosome1
    nucleus1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region ----
    GO:0005615extracellular space IDA--
    GO:0070062extracellular vesicular exosome IDA19056867

    Find genes that share ontologies with ZG16B           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZG16B
    Interactions:

        Search GeneGlobe Interaction Network for ZG16B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    Selected Interacting proteins for ZG16B (Q96DA02, 3 ENSP000003717154) via UniProtKB, MINT, STRING, and/or I2D (see all 10)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBQLN4Q9NRR52, 3, ENSP000003572924MINT-2878514 I2D: score=3 STRING: ENSP00000357292
    USP25Q9UHP33, ENSP000002856794I2D: score=2 STRING: ENSP00000285679
    ATG101Q9BSB43I2D: score=1 
    CLN3Q132863I2D: score=1 
    LIN7CQ9NUP93I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001895retina homeostasis IEP--
    GO:0008150biological_process ND--

    Find genes that share ontologies with ZG16B           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZG16B



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZG16B gene: 
    NM_145252.2  

    Unigene Cluster for ZG16B:

    Zymogen granule protein 16B
    Hs.105887  [show with all ESTs]
    Unigene Representative Sequence: BU558247
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000382280(uc002cru.3) ENST00000570670 ENST00000576423 ENST00000573019
    ENST00000571723 ENST00000572863
    miRNA
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    2 qRT-PCR Assays for microRNAs that regulate ZG16B:
    hsa-miR-298 hsa-miR-3165
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat ZG16B
      QuantiFast Probe-based Assays in human, mouse, rat ZG16B

    Additional mRNA sequence: 

    AK311810.1 AY359021.1 BC009722.1 EF067313.1 JN411265.1 

    3 DOTS entries:

    DT.100021339  DT.120656002  DT.97777676 

    Selected AceView cDNA sequences (see all 72):

    BM849630 AA722847 BP334240 BU858000 BE787020 BM773499 BQ924772 BM769212 
    AI559190 BM786200 BQ653517 BP334806 CB985380 BE621031 CD675363 AA513718 
    AY359021 BQ685152 NM_145252 AA716150 BG332049 BP334554 CF122427 BP334928 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ZG16B    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c
    SP1:        -                 -                     
    SP2:                          -                     
    SP3:                                                
    SP4:                          -                     


    ECgene alternative splicing isoforms for ZG16B

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZG16B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACACCAGCA
    ZG16B Expression
    About this image


    ZG16B expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Endothelium (Cardiovascular System)
             Endothelial-like cells
     
     Gall Bladder (Hepatobiliary System)
     
     Stomach (Gastrointestinal Tract)
     
     Prostate (Endocrine System)
    ZG16B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZG16B Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.105887
        Custom PCR Arrays for ZG16B
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZG16B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    ENSEMBL Gene Tree for ZG16B (if available)
    TreeFam Gene Tree for ZG16B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZG16B gene
    ZG162  
    3 SIMAP similar genes for ZG16B using alignment to 3 protein entries:     ZG16B_HUMAN (see all proteins):
    EECP    PAUF    ZG16

    Find genes that share paralogs with ZG16B           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZG16B (see all 155)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs734811571,2
    C,F--2878232(+) TTGGGA/GATAGG 1 -- us2k13Minor allele frequency- G:0.15WA CSA 122
    rs1883018491,2
    --2878255(+) GTGGGC/TGGACG 1 -- us2k10--------
    rs47859061,2
    C,F,A,H--2878324(+) CAGCCG/ATGTGA 1 -- us2k114Minor allele frequency- A:0.33NS NA WA CSA EA 571
    rs47859071,2
    C,F,A,H--2878439(+) AAAGAG/ATTTTC 1 -- us2k1 tfbs322Minor allele frequency- A:0.41NS EA NA WA CSA 2021
    rs801611321,2
    F--2878473(+) TTGAAT/CGTTTC 1 -- us2k11Minor allele frequency- C:0.01WA 118
    rs1932786251,2
    --2878587(+) GTTCAA/TGTCGT 1 -- us2k10--------
    rs756960541,2
    F--2878590(+) CAAGTC/TGTGAA 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs1139683531,2
    C,F--2878611(+) CTCCCG/ACAGCC 1 -- us2k12Minor allele frequency- A:0.05CSA WA 120
    rs1855406911,2
    --2878643(+) GAGACC/GGGCGT 1 -- us2k10--------
    rs1162142451,2
    C,F--2878644(+) AGACCG/AGCGTC 1 -- us2k12Minor allele frequency- A:0.07WA EA 238

    HapMap Linkage Disequilibrium report for ZG16B (2880170 - 2888967 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for ZG16B:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2663371CNV Deletion23128226
    nsv905170CNV Loss21882294
    dgv2574n71CNV Loss21882294
    nsv905165CNV Loss21882294
    nsv905169CNV Loss21882294
    nsv905152CNV Loss21882294
    nsv905162CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZG16B
    DNA2.0 Custom Variant and Variant Library Synthesis for ZG16B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    2 diseases for ZG16B:    
    About MalaCards
    pancreatic ductal adenocarcinoma    adenocarcinoma


    Find genes that share disorders with ZG16B           About GenesLikeMe


    Export disorders for ZG16B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZG16B gene, integrated from 10 sources (see all 25):
    (articles sorted by number of sources associating them with ZG16B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold. (PubMed id 21110947)1, 2 Kanagawa M.... Yamaguchi Y. (Biochem. Biophys. Res. Commun. 2011)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. Mass spectrometry allows direct identification of proteins in large genomes. (PubMed id 11678034)1, 2 Kuster B.... Mann M. (Proteomics 2001)
    6. Pancreatic adenocarcinoma upregulated factor, a novel endothelial activator, promotes angiogenesis and vascular permeability. (PubMed id 22907431)1 Kim S.J....Koh S.S. (Oncogene 2013)
    7. Silencing of pancreatic adenocarcinoma upregulated factor by RNA interference inhibits the malignant phenotypes of human colorectal cancer cells. (PubMed id 23677445)1 Liu P.F....Zhu X.G. (Oncol. Rep. 2013)
    8. SIRT1 inhibits proliferation of pancreatic cancer cells expressing pancreatic adenocarcinoma up-regulated factor (PAUF), a novel oncogene, by suppression of I^-catenin. (PubMed id 22640743)1 Cho I.R....Chung Y.H. (Biochem. Biophys. Res. Commun. 2012)
    9. Pancreatic adenocarcinoma up-regulated factor (PAUF) enhances the expression of I^-catenin, leading to a rapid proliferation of pancreatic cells. (PubMed id 21196815)1 Cho I.R....Chung Y.H. (amp 2011)
    10. Pancreatic adenocarcinoma upregulated factor promotes metastasis by regulating TLR/CXCR4 activation. (PubMed id 20802527)1 Park H.D....Lim D.S. (Oncogene 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 124220 HGNC: 30456 AceView: LOC124220 Ensembl:ENSG00000162078 euGenes: HUgn124220
    ECgene: ZG16B H-InvDB: ZG16B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZG16B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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