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Aliases for ZFYVE21 Gene

Aliases for ZFYVE21 Gene

  • Zinc Finger, FYVE Domain Containing 21 2 3
  • ZF21 3 4 6
  • Zinc Finger FYVE Domain-Containing Protein 21 3
  • FYVE Domain Containing 21 3

External Ids for ZFYVE21 Gene

Previous GeneCards Identifiers for ZFYVE21 Gene

  • GC14P097997
  • GC14P102172
  • GC14P103251
  • GC14P104182
  • GC14P084360

Summaries for ZFYVE21 Gene

GeneCards Summary for ZFYVE21 Gene

ZFYVE21 (Zinc Finger, FYVE Domain Containing 21) is a Protein Coding gene. An important paralog of this gene is ZFYVE16.

UniProtKB/Swiss-Prot for ZFYVE21 Gene

  • Plays a role in cell adhesion, and thereby in cell motility which requires repeated formation and disassembly of focal adhesions. Regulates microtubule-induced PTK2/FAK1 dephosphorylation, an event important for focal adhesion disassembly, as well as integrin beta-1/ITGB1 cell surface expression.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFYVE21 Gene

Genomics for ZFYVE21 Gene

Regulatory Elements for ZFYVE21 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZFYVE21 Gene

Start:
103,715,730 bp from pter
End:
103,733,668 bp from pter
Size:
17,939 bases
Orientation:
Plus strand

Genomic View for ZFYVE21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZFYVE21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFYVE21 Gene

Proteins for ZFYVE21 Gene

  • Protein details for ZFYVE21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQ24-ZFY21_HUMAN
    Recommended name:
    Zinc finger FYVE domain-containing protein 21
    Protein Accession:
    Q9BQ24
    Secondary Accessions:
    • A8K3A4
    • Q86T05
    • Q96LT1

    Protein attributes for ZFYVE21 Gene

    Size:
    234 amino acids
    Molecular mass:
    26506 Da
    Quaternary structure:
    • Interacts with PTK2/FAK1.
    SequenceCaution:
    • Sequence=CAD62589.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ZFYVE21 Gene

    Alternative splice isoforms for ZFYVE21 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZFYVE21 Gene

Proteomics data for ZFYVE21 Gene at MOPED

Post-translational modifications for ZFYVE21 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZFYVE21 Gene

No data available for DME Specific Peptides for ZFYVE21 Gene

Domains for ZFYVE21 Gene

Gene Families for ZFYVE21 Gene

HGNC:
  • ZFYVE :Zinc fingers, FYVE domain containing

Protein Domains for ZFYVE21 Gene

Suggested Antigen Peptide Sequences for ZFYVE21 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BQ24

UniProtKB/Swiss-Prot:

ZFY21_HUMAN :
  • Q9BQ24
Domain:
  • The FYVE-type zinc finger mediates interaction with PTK2/FAK1, and also interaction with PI(3)P and association with endosomes
  • The C-terminal region exhibits a structure similar to canonical PH domains, but lacks a positively charged interface to bind phosphatidylinositol phosphate
Similarity:
  • Contains 1 FYVE-type zinc finger.
genes like me logo Genes that share domains with ZFYVE21: view

Function for ZFYVE21 Gene

Molecular function for ZFYVE21 Gene

UniProtKB/Swiss-Prot Function: Plays a role in cell adhesion, and thereby in cell motility which requires repeated formation and disassembly of focal adhesions. Regulates microtubule-induced PTK2/FAK1 dephosphorylation, an event important for focal adhesion disassembly, as well as integrin beta-1/ITGB1 cell surface expression.

Gene Ontology (GO) - Molecular Function for ZFYVE21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZFYVE21: view

Phenotypes for ZFYVE21 Gene

GenomeRNAi human phenotypes for ZFYVE21:
genes like me logo Genes that share phenotypes with ZFYVE21: view

Animal Model Products

CRISPR Products

miRNA for ZFYVE21 Gene

miRTarBase miRNAs that target ZFYVE21

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZFYVE21 Gene

Localization for ZFYVE21 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZFYVE21 Gene

Cell junction, focal adhesion. Cytoplasmic vesicle. Endosome. Note=Within cytoplasmic vesicles, partially colocalizes with EEA1, an endosomal marker.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZFYVE21 Gene COMPARTMENTS Subcellular localization image for ZFYVE21 gene
Compartment Confidence
cytosol 3
extracellular 3
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for ZFYVE21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005768 endosome IEA --
GO:0005925 focal adhesion IEA --
GO:0016023 cytoplasmic membrane-bounded vesicle IEA --
GO:0030054 cell junction --
GO:0031410 cytoplasmic vesicle --
genes like me logo Genes that share ontologies with ZFYVE21: view

Pathways for ZFYVE21 Gene

SuperPathways for ZFYVE21 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZFYVE21 Gene

None

No data available for Pathways by source for ZFYVE21 Gene

Transcripts for ZFYVE21 Gene

Unigene Clusters for ZFYVE21 Gene

Zinc finger, FYVE domain containing 21:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZFYVE21

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZFYVE21

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZFYVE21 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c
SP1: - - - - -
SP2: - - - - -
SP3: - - - - - -
SP4: - - -
SP5: - -
SP6: - -
SP7: - -
SP8:

Relevant External Links for ZFYVE21 Gene

GeneLoc Exon Structure for
ZFYVE21
ECgene alternative splicing isoforms for
ZFYVE21

Expression for ZFYVE21 Gene

mRNA expression in normal human tissues for ZFYVE21 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZFYVE21 Gene

SOURCE GeneReport for Unigene cluster for ZFYVE21 Gene Hs.592322

genes like me logo Genes that share expressions with ZFYVE21: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZFYVE21 Gene

Orthologs for ZFYVE21 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ZFYVE21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZFYVE21 35
  • 97.62 (n)
  • 97.14 (a)
ZFYVE21 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZFYVE21 35
  • 81.87 (n)
  • 78 (a)
ZFYVE21 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZFYVE21 35
  • 88.36 (n)
  • 87.7 (a)
ZFYVE21 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfyve21 35
  • 83.9 (n)
  • 84.62 (a)
Zfyve21 16
Zfyve21 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZFYVE21 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZFYVE21 36
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfyve21 35
  • 83.71 (n)
  • 83.86 (a)
chicken
(Gallus gallus)
Aves ZFYVE21 35
  • 76.5 (n)
  • 76.64 (a)
ZFYVE21 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZFYVE21 36
  • 76 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.24182 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.904 35
zfyve21 35
  • 70.29 (n)
  • 70 (a)
zebrafish
(Danio rerio)
Actinopterygii wufb66b01 35
zfyve21 35
  • 69.76 (n)
  • 72.12 (a)
zfyve21 36
  • 72 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Sara 36
  • 4 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea aka-1 36
  • 5 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FAB1 36
  • 2 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4065 36
  • 4 (a)
OneToMany
Species with no ortholog for ZFYVE21:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ZFYVE21 Gene

ENSEMBL:
Gene Tree for ZFYVE21 (if available)
TreeFam:
Gene Tree for ZFYVE21 (if available)

Paralogs for ZFYVE21 Gene

Paralogs for ZFYVE21 Gene

genes like me logo Genes that share paralogs with ZFYVE21: view

Variants for ZFYVE21 Gene

Sequence variations from dbSNP and Humsavar for ZFYVE21 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs8548 -- 103,733,243(-) AGTAT(G/T)GACAA utr-variant-3-prime
rs941474 -- 103,723,524(-) GAGAT(C/T)CCACG intron-variant
rs1535099 -- 103,727,941(-) CGCGC(A/G)GGACT intron-variant
rs1535100 -- 103,727,859(-) GACAC(C/G)AGGGC reference, synonymous-codon
rs2144078 -- 103,718,010(-) GCATC(A/G)CCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZFYVE21 Gene

Variant ID Type Subtype PubMed ID
nsv902300 CNV Loss 21882294
nsv902308 CNV Loss 21882294
dgv1995n71 CNV Loss 21882294
dgv658e1 CNV Complex 17122850
nsv527425 CNV Loss 19592680
nsv470673 CNV Loss 18288195
nsv902313 CNV Loss 21882294
nsv902315 CNV Loss 21882294
dgv1996n71 CNV Loss 21882294
nsv9171 CNV Gain 18304495
nsv827071 CNV Gain 20364138

Relevant External Links for ZFYVE21 Gene

HapMap Linkage Disequilibrium report
ZFYVE21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZFYVE21 Gene

Disorders for ZFYVE21 Gene

Relevant External Links for ZFYVE21

Genetic Association Database (GAD)
ZFYVE21
Human Genome Epidemiology (HuGE) Navigator
ZFYVE21
genes like me logo Genes that share disorders with ZFYVE21: view

No data available for UniProtKB/Swiss-Prot for ZFYVE21 Gene

Publications for ZFYVE21 Gene

  1. ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain. (PMID: 21768110) Nagano M. … Seiki M. (J. Biol. Chem. 2011) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood H.D. … Lan Q. (Occup Environ Med 2009) 3 48
  5. ZF21 protein regulates cell adhesion and motility. (PMID: 20439989) Nagano M. … Seiki M. (J. Biol. Chem. 2010) 3 4

Products for ZFYVE21 Gene

Sources for ZFYVE21 Gene

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