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ZFR2 Gene

protein-coding   GIFtS: 44
GCID: GC19M003804

Zinc Finger RNA Binding Protein 2

(Previous name: KIAA1086)
(Previous symbol: KIAA1086)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger RNA Binding Protein 21 2
KIAA10861 2 3
Zinc Finger RNA-Binding Protein 22

External Ids:    HGNC: 291891   Entrez Gene: 232172   Ensembl: ENSG000001052787   UniProtKB: Q9UPR63   

Export aliases for ZFR2 gene to outside databases

Previous GC identifers: GC19M003756 GC19M003568


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZFR2 Gene:
ZFR2 (zinc finger RNA binding protein 2) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ILF2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011295.12  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZFR2 gene promoter:
         STAT1   USF1   STAT1beta   Tal-1beta   STAT1alpha   E47   CBF-B   USF-1   c-Myb   CBF(2)   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ZFR2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZFR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

ZFR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZFR2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M003804:  view genomic region     (about GC identifiers)

Start:
3,804,022 bp from pter      End:
3,869,030 bp from pter
Size:
65,009 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6 (See protein sequence)
Recommended Name: Zinc finger RNA-binding protein 2  
Size: 939 amino acids; 101330 Da
Alternative splicing: 2 isoforms:  Q9UPR6-1   Q9UPR6-2   

Explore the universe of human proteins at neXtProt for ZFR2: NX_Q9UPR6

Explore proteomics data for ZFR2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZFR2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001139112.1  NP_055989.1  

    ENSEMBL proteins: 
     ENSP00000262961   ENSP00000388974   ENSP00000467592   ENSP00000465574   ENSP00000388567  
     ENSP00000468289   ENSP00000467762  

    ZFR2 Human Recombinant Protein Products:

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    antibodies-online peptides for ZFR2

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    Cloud-Clone Corp. CLIAs for ZFR2
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    antibodies-online kits for ZFR2 (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    4 InterPro protein domains:
     IPR003604 Znf_U1
     IPR006561 DZF
     IPR015880 Znf_C2H2-like
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9UPR6

    ProtoNet protein and cluster: Q9UPR6

    UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6
    Similarity: Contains 1 DZF domain


    Find genes that share domains with ZFR2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0008270zinc ion binding IEA--
         
    Find genes that share ontologies with ZFR2           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZFR2

    miRNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZFR2
    Interactions:

        Search GeneGlobe Interaction Network for ZFR2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    Selected Interacting proteins for ZFR2 (Q9UPR63 ENSP000002629614) via UniProtKB, MINT, STRING, and/or I2D (see all 25)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=2 
    HIST1H4BP628053I2D: score=2 
    HIST1H4CP628053I2D: score=2 
    HIST1H4DP628053I2D: score=2 
    HIST1H4EP628053I2D: score=2 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZFR2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZFR2 gene (2 alternative transcripts): 
    NM_001145640.1  NM_015174.1  

    Unigene Cluster for ZFR2:

    Zinc finger RNA binding protein 2
    Hs.65750  [show with all ESTs]
    Unigene Representative Sequence: NM_015174
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000262961(uc002lyw.2 uc010xhx.1) ENST00000438164 ENST00000591965
    ENST00000592807 ENST00000587212 ENST00000586578 ENST00000439086(uc002lyx.4 uc010xhy.2)
    ENST00000592398 ENST00000591712
    miRNA
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    Inhib. RNA
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    Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ZFR2
    Primer
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      QuantiFast Probe-based Assays in human, mouse, rat ZFR2

    Additional mRNA sequence: 

    AB029009.1 AL365406.1 BC034005.1 NR_027149.1 

    3 DOTS entries:

    DT.97836063  DT.95362926  DT.95237517 

    12 AceView cDNA sequences:

    AB029009 AA778611 BM685267 BM683636 BX092621 Z39431 BF058458 AI025800 
    AA719825 CK301166 BM930744 BM929696 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ZFR2    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                                                                        
    SP2:                    -     -                                             
    SP3:                    -                                                   
    SP4:                                                                        


    ECgene alternative splicing isoforms for ZFR2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZFR2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCTGTCACAT
    ZFR2 Expression
    About this image


    ZFR2 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Ovary (Reproductive System)
             Secondary Oocyte Antral Follicle
     
     Neural Ectoderm (Nervous System)
             Neural ectoderm cells
     
     Gonad
             Secondary Oocyte Antral Follicle
     
     Neural Tube (Nervous System)
             Floor plate-like cells
     
     Eye (Sensory Organs)
    ZFR2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZFR2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.65750
        Custom PCR Arrays for ZFR2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFR2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZFR2 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfr21 , 5 zinc finger RNA binding protein 21, 5 69.25(n)1
    60.28(a)1
      10 (39.72 cM)5
    1034061  NM_001034895.31  NP_001030067.21 
     812331555 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    4(a)
    many ↔ many
    AADN03020792.1(1609-4417)
    zebrafish
    (Danio rerio)
    Actinopterygii zfr26
    zinc finger RNA binding protein 2
    48(a)
    1 ↔ 1
    22(4697499-4741035) ENSDARG00000071683
    fruit fly
    (Drosophila melanogaster)
    Insecta Zn72D6
    Zinc-finger protein at 72D
    40(a)
    1 → many
    3L(16099694-16105726)
    worm
    (Caenorhabditis elegans)
    Secernentea Y95B8A.86
    Protein Y95B8A.8 (Y95B8A.8) mRNA, complete cds
    29(a)
    1 → many
    I(853451-871947) WBGene00022388


    ENSEMBL Gene Tree for ZFR2 (if available)
    TreeFam Gene Tree for ZFR2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZFR2 gene
    ILF22  STRBP2  ILF32  ZFR2  
    3 SIMAP similar genes for ZFR2 using alignment to 5 protein entries:     ZFR2_HUMAN (see all proteins):
    DKFZp434P151    STRBP    ZFR

    Find genes that share paralogs with ZFR2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZFR2 (see all 1769)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1895769611,2
    --3635130(+) GCTCCA/GCCTCC 3 -- us2k10--------
    rs72488561,2
    C,F,A,H--3635332(+) AGCCAC/TCGTCT 3 -- us2k117Minor allele frequency- T:0.16NS EA NA WA CSA 859
    rs1437342381,2
    --3635334(+) CCATCA/GTCTGC 3 -- us2k10--------
    rs2003579831,2
    C--3635335(+) CATCGG/TCTGCG 3 -- us2k10--------
    rs1165942841,2
    C,F--3803817(+) CAGGGG/AACCCT 1 -- ds50011Minor allele frequency- A:0.05WA 118
    rs1133221561,2
    C--3803840(+) TGAGGGG/-ATGCC 1 -- ds50011Minor allele frequency- -:0.00CSA 2
    rs1418835291,2
    --3803940(+) CCACCC/TGGGAC 1 -- ds50010--------
    rs81114521,2
    C,F,H--3804004(+) AGGACG/AGCACG 1 -- ds50015Minor allele frequency- A:0.02NS EA WA 500
    rs1850211621,2
    --3804008(+) CGGCAC/GGGCTC 1 -- ds50010--------
    rs1902642501,2
    --3804125(+) AGAAAC/TAAAAC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZFR2 (3804022 - 3869030 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for ZFR2 (see all 23):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1995150CNV Deletion18987734
    esv2717975CNV Deletion23290073
    esv2717974CNV Deletion23290073
    esv2071608CNV Deletion18987734
    esv2717971CNV Deletion23290073
    esv1602911CNV Deletion17803354
    esv2666653CNV Deletion23128226
    esv2743112CNV Deletion23290073
    esv2717972CNV Deletion23290073
    esv2717969CNV Deletion23290073

    Human Gene Mutation Database (HGMD): ZFR2
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZFR2
    DNA2.0 Custom Variant and Variant Library Synthesis for ZFR2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with ZFR2           About GenesLikeMe

    Genetic Association Database (GAD): ZFR2

    Export disorders for ZFR2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZFR2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZFR2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 2, 3 Kikuno R.... Ohara O. (DNA Res. 1999)
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 23217 HGNC: 29189 AceView: KIAA1086 Ensembl:ENSG00000105278 euGenes: HUgn23217
    ECgene: ZFR2 H-InvDB: ZFR2

    (According to HUGE)
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    HUGE: KIAA1086

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZFR2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZFR2 gene:
    Search GeneIP for patents involving ZFR2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat ZFR2 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing ZFR2
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