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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZFR2 Gene

protein-coding   GIFtS: 43
GCID: GC19M003804

Zinc Finger RNA Binding Protein 2

(Previous name: KIAA1086)
(Previous symbol: KIAA1086)
  Search for ZFR2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger RNA Binding Protein 21 2
KIAA10861 2 3
Zinc Finger RNA-Binding Protein 22

External Ids:    HGNC: 291891   Entrez Gene: 232172   Ensembl: ENSG000001052787   UniProtKB: Q9UPR63   

Export aliases for ZFR2 gene to outside databases

Previous GC identifers: GC19M003756 GC19M003568


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZFR2 Gene: 
ZFR2 (zinc finger RNA binding protein 2) is a protein-coding gene. GO annotations related to this gene include zinc ion binding and nucleic acid binding. An important paralog of this gene is ILF2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.2  NT_011255.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZFR2 gene promoter:
         STAT1   USF1   STAT1beta   Tal-1beta   STAT1alpha   E47   CBF-B   USF-1   c-Myb   CBF(2)   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ZFR2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZFR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

ZFR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZFR2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M003804:  view genomic region     (about GC identifiers)

Start:
3,804,022 bp from pter      End:
3,869,030 bp from pter
Size:
65,009 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6 (See protein sequence)
Recommended Name: Zinc finger RNA-binding protein 2  
Size: 939 amino acids; 101330 Da
Alternative splicing: 2 isoforms:  Q9UPR6-1   Q9UPR6-2   

Explore the universe of human proteins at neXtProt for ZFR2: NX_Q9UPR6

Explore proteomics data for ZFR2 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9UPR6

  • ZFR2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZFR2 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001139112.1  NP_055989.1  

    ENSEMBL proteins: 
     ENSP00000262961   ENSP00000388974   ENSP00000467592   ENSP00000465574   ENSP00000388567  
     ENSP00000468289   ENSP00000467762  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    4 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR003604 Znf_U1
     IPR006561 DZF
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9UPR6

    ProtoNet protein and cluster: Q9UPR6

    UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6
    Similarity: Contains 1 DZF domain


    ZFR2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0008270zinc ion binding IEA--
         
    ZFR2 for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZFR2

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    5/20 Interacting proteins for ZFR2 (Q9UPR63 ENSP000002629614) via UniProtKB, MINT, STRING, and/or I2D (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=2 
    HIST1H4BP628053I2D: score=2 
    HIST1H4CP628053I2D: score=2 
    HIST1H4DP628053I2D: score=2 
    HIST1H4EP628053I2D: score=2 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZFR2

    Search CenterWatch for drugs/clinical trials and news about ZFR2

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZFR2 gene (2 alternative transcripts): 
    NM_001145640.1  NM_015174.1  

    Unigene Cluster for ZFR2:

    Zinc finger RNA binding protein 2
    Hs.65750  [show with all ESTs]
    Unigene Representative Sequence: NM_015174
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000262961(uc002lyw.2 uc010xhx.1) ENST00000438164 ENST00000591965
    ENST00000592807 ENST00000587212 ENST00000586578 ENST00000439086(uc002lyx.4 uc010xhy.2)
    ENST00000592398 ENST00000591712
    miRNA
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    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    Additional mRNA sequence: 

    AB029009.1 AL365406.1 BC034005.1 NR_027149.1 

    3 DOTS entries:

    DT.97836063  DT.95362926  DT.95237517 

    12 AceView cDNA sequences:

    BM683636 BM685267 AB029009 BX092621 AA778611 BF058458 Z39431 AI025800 
    AA719825 CK301166 BM930744 BM929696 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ZFR2    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                                                                        
    SP2:                    -     -                                             
    SP3:                    -                                                   
    SP4:                                                                        


    ECgene alternative splicing isoforms for ZFR2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZFR2 expression in normal human tissues (normalized intensities)      ZFR2 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCTGTCACAT
    ZFR2 Expression
    About this image


    ZFR2 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/4 selected tissues (see all 4) fully expand
     
     Ovary (Reproductive System)
             Secondary Oocyte Antral Follicle
     
     Gonad
             Secondary Oocyte Antral Follicle
     
     Brain (Nervous System)
             neocortex   
     
     Eye (Sensory Organs)

    See ZFR2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZFR2

    SOURCE GeneReport for Unigene cluster: Hs.65750
        SABiosciences Custom PCR Arrays for ZFR2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFR2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZFR2 gene from 4/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfr21 , 5 zinc finger RNA binding protein 21, 5 65.46(n)1
    56.51(a)1
      10 (39.72 cM)5
    1034061  NM_001034895.31  NP_001030067.21 
     812331555 
    zebrafish
    (Danio rerio)
    Actinopterygii zfr26
    zinc finger RNA binding protein 2
    45(a)
    1 ↔ 1
    22(4697499-4741035)
    fruit fly
    (Drosophila melanogaster)
    Insecta Zn72D6
    Zinc-finger protein at 72D
    37(a)
    1 → many
    3L(16099694-16105726)
    worm
    (Caenorhabditis elegans)
    Secernentea Y95B8A.86
    Protein Y95B8A.8
    27(a)
    1 → many
    I(853451-871947)


    ENSEMBL Gene Tree for ZFR2 (if available)
    TreeFam Gene Tree for ZFR2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZFR2 gene
    ILF22  STRBP2  ILF32  ZFR2  
    3 SIMAP similar genes for ZFR2 using alignment to 5 protein entries:     ZFR2_HUMAN (see all proteins):
    DKFZp434P151    STRBP    ZFR

    ZFR2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1769 SNPs in ZFR2 are shown (see all 1769)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1895769611,2
    --3635130(+) GCTCCA/GCCTCC 3 -- us2k10--------
    rs72488561,2
    C,F,A,H--3635332(+) AGCCAC/TCGTCT 3 -- us2k117Minor allele frequency- T:0.16NS EA NA WA CSA 859
    rs1437342381,2
    --3635334(+) CCATCA/GTCTGC 3 -- us2k10--------
    rs2003579831,2
    C--3635335(+) CATCGG/TCTGCG 3 -- us2k10--------
    rs1165942841,2
    C,F--3803817(+) CAGGGG/AACCCT 1 -- ds50011Minor allele frequency- A:0.05WA 118
    rs1133221561,2
    C--3803840(+) TGAGGGG/-ATGCC 1 -- ds50011Minor allele frequency- -:0.00CSA 2
    rs1418835291,2
    --3803940(+) CCACCC/TGGGAC 1 -- ds50010--------
    rs81114521,2
    C,F,H--3804004(+) AGGACG/AGCACG 1 -- ds50015Minor allele frequency- A:0.02NS EA WA 500
    rs1850211621,2
    --3804008(+) CGGCAC/GGGCTC 1 -- ds50010--------
    rs1902642501,2
    --3804125(+) AGAAAC/TAAAAC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZFR2 (3804022 - 3869030 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/23 variations for ZFR2 (see all 23):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv1995150CNV Deletion18987734
    esv2717975CNV Deletion23290073
    esv2717974CNV Deletion23290073
    esv2071608CNV Deletion18987734
    esv2717971CNV Deletion23290073
    esv1602911CNV Deletion17803354
    esv2666653CNV Deletion23128226
    esv2743112CNV Deletion23290073
    esv2717972CNV Deletion23290073
    esv2717969CNV Deletion23290073

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZFR2 for disorders           About MalaCards

    ZFR2 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZFR2

    Export disorders for ZFR2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZFR2 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZFR2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 2, 3 Kikuno R....Ohara O. (1999)
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23217 HGNC: 29189 AceView: KIAA1086 Ensembl:ENSG00000105278 euGenes: HUgn23217
    ECgene: ZFR2 H-InvDB: ZFR2

    (According to HUGE)
    About This Section
    HUGE: KIAA1086

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZFR2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZFR2 gene:
    Search GeneIP for patents involving ZFR2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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