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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZFR2 Gene

protein-coding   GIFtS: 44
GCID: GC19M003804

zinc finger RNA binding protein 2

(Previous name: KIAA1086 )
(Previous symbol: KIAA1086)
  Search for ZFR2
in
MalaCards
our new
 Human Malady Compendium 
Biological research products
for ZFR2    

Aliases
for ZFR2 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Zinc Finger RNA Binding Protein 21 2
KIAA10861 2 3
Zinc Finger RNA-Binding Protein 22

External Ids:    HGNC: 291891   Entrez Gene: 232172   Ensembl: ENSG000001052787   UniProtKB: Q9UPR63   

Export aliases for ZFR2 gene to outside databases

Previous GC identifers: GC19M003756 GC19M003568


Summaries
for ZFR2 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for ZFR2 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011255.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZFR2 gene promoter:
         STAT1   USF1   STAT1beta   Tal-1beta   STAT1alpha   E47   CBF-B   USF-1   c-Myb   CBF(2)   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ZFR2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZFR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.3   Ensembl cytogenetic band:  19p13.3   HGNC cytogenetic band: 19p13.3

ZFR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZFR2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M003804:  view genomic region     (about GC identifiers)

Start:
 3,804,022 bp from pter      End:
 3,869,030 bp from pter
Size:
 65,009 bases      Orientation:
 minus strand

Proteins
for ZFR2 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6 (See protein sequence)
Recommended Name: Zinc finger RNA-binding protein 2  
Size: 939 amino acids; 101330 Da
Alternative splicing: 2 isoforms:  Q9UPR6-1   Q9UPR6-2   

Explore the universe of human proteins at neXtProt for ZFR2: NX_Q9UPR6

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9UPR6

    • ZFR2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001139112.1  NP_055989.1  

    ENSEMBL proteins: 
     ENSP00000262961   ENSP00000388974   ENSP00000467592   ENSP00000465574   ENSP00000388567  
     ENSP00000468289   ENSP00000467762  

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    Uscn Proteins for ZFR2

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular IEA--


    ZFR2 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for ZFR2 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    ZFR2 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR003604 Znf_U1
     IPR006561 DZF
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9UPR6

    ProtoNet protein and cluster: Q9UPR6

    UniProtKB/Swiss-Prot: ZFR2_HUMAN, Q9UPR6
    Similarity: Contains 1 DZF domain


    Function
    for ZFR2 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
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    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0008270zinc ion binding IEA--


    ZFR2 for ontologies           About GeneDecksing



    Pathways & Interactions
    for ZFR2 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZFR2

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    5/20 Interacting proteins for ZFR2 (Q9UPR63 ENSP000002629614) via UniProtKB, MINT, STRING, and/or I2D (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=2 
    HIST1H4BP628053I2D: score=2 
    HIST1H4CP628053I2D: score=2 
    HIST1H4DP628053I2D: score=2 
    HIST1H4EP628053I2D: score=2 
    About this table

    Drugs & Compounds
    for ZFR2 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZFR2
    Search CenterWatch for drugs/clinical trials and news about ZFR2 

    Transcripts
    for ZFR2 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section
    REFSEQ mRNAs for ZFR2 gene (2 alternative transcripts): 
    NM_001145640.1  NM_015174.1  

    Unigene Cluster for ZFR2:

    Zinc finger RNA binding protein 2
    Hs.65750  [show with all ESTs]
    Unigene Representative Sequence: NM_015174
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000262961(uc002lyw.2 uc010xhx.1) ENST00000438164 ENST00000591965
    ENST00000592807 ENST00000587212 ENST00000586578 ENST00000439086(uc002lyx.4 uc010xhy.2)
    ENST00000592398 ENST00000591712

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    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZFR2 (see all 4)
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    OriGene siRNA: ZFR2
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    Clone
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    Additional cDNA sequence: 

    AB029009.1 AL365406.1 BC034005.1 NR_027149.1 

    3 DOTS entries:

    DT.97836063  DT.95362926  DT.95237517 

    12 AceView cDNA sequences:

    BM685267 AB029009 BX092621 AA778611 BM683636 BF058458 Z39431 AI025800 
    AA719825 CK301166 BM929696 BM930744 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ZFR2    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                                                                        
    SP2:                    -     -                                             
    SP3:                    -                                                   
    SP4:                                                                        


    ECgene alternative splicing isoforms for ZFR2

    Expression
    for ZFR2 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZFR2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TCTGTCACAT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    ZFR2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    OvaryAntral FollicleSecondary OocyteFemale Gametocytes, Germ Cells
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ZFR2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZFR2

    SOURCE GeneReport for Unigene cluster: Hs.65750
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFR2

    Orthologs
    for ZFR2 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of animals.

    Orthologs for ZFR2 gene from 3/16 species (see all 16)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    zebrafish
    (Danio rerio)    		 Actinopterygii zfr26
    		 zinc finger RNA binding protein 2
    		 46(a)
    		 1 ↔ 1
    		 22(4697499-4741035)
    fruit fly
    (Drosophila melanogaster)    		 Insecta Zn72D6
    		 Zinc-finger protein at 72D
    		 36(a)
    		 1 → many
    		 3L(16099694-16105726)
    worm
    (Caenorhabditis elegans)    		 Secernentea Y95B8A.86
    		 --
    		 26(a)
    		 possible ortholog
    		 I(853454-871950)


    ENSEMBL Gene Tree for ZFR2 (if available)
    TreeFam Gene Tree for ZFR2 (if available) 

    Paralogs
    for ZFR2 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZFR2 gene
    ILF22  STRBP2  ILF32  ZFR2  
    3 SIMAP similar genes for ZFR2 using alignment to 5 protein entries:     ZFR2_HUMAN (see all proteins):
    DKFZp434P151    STRBP    ZFR

    ZFR2 for paralogs           About GeneDecksing



    Genomic Variants
    for ZFR2 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1333 NCBI SNPs in ZFR2 are shown (see all 1333)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 19 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1165942841,2
    		F,--3803817(+) CAGGGG/AACCCT 1 -- ds50011Minor allele frequency- A:0.05WA 118
    rs1418835291,2
    		--3803940(+) CCACCC/TGGGAC 1 -- ds50010--------
    rs81114521,2
    		C,F,H,--3804004(+) AGGACG/AGCACG 1 -- ds50015Minor allele frequency- A:0.02NS EA WA 500
    rs1850211621,2
    		--3804008(+) CGGCAC/GGGCTC 1 -- ds50010--------
    rs1902642501,2
    		--3804125(+) AGAAAC/TAAAAC 1 -- ut310--------
    rs795349071,2
    		C,F,--3804215(+) AAAAAA/CCTGAC 1 -- ut313Minor allele frequency- C:0.28WA CSA 122
    rs739193781,2
    		C,F,--3804345(+) GGGTCC/ACCCAG 1 -- ut315Minor allele frequency- A:0.11WA NA EA 362
    rs1137753621,2
    		C,--3804354(+) AGGCAC/TGGGTC 1 -- ut312Minor allele frequency- T:0.28WA 120
    rs1506512371,2
    		--3804361(+) GGTCCC/TGGGCC 1 -- ut310--------
    rs1135565951,2
    		C,--3804617(+) TCCTCA/GTCGCC 1 -- ut313Minor allele frequency- G:0.28WA CSA 121

    HapMap Linkage Disequilibrium report for ZFR2 (3804022 - 3869030 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 5 variations for ZFR2
         1 CNV: 30067
         4 Indels: 89041 78041 42668 45760

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    Disorders / Diseases
    for ZFR2 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    		   --

    Publications
    for ZFR2 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZFR2 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZFR2)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 2, 3 Kikuno R....Ohara O. (1999)
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    3. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    External Searches for ZFR2 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing ZFR2 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23217 HGNC: 29189 AceView: KIAA1086 Ensembl:ENSG00000105278 euGenes: HUgn23217
    ECgene: ZFR2 H-InvDB: ZFR2

    Other Databases showing ZFR2 gene

    (According to HUGE)
    About This Section
    HUGE: KIAA1086

    Specialized Databases showing ZFR2 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZFR2 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for ZFR2 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for ZFR2 gene:
    Search GeneIP for patents involving ZFR2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
    for ZFR2 gene

    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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    About This Section

     
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
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