ZFP91-CNTF Gene
protein-coding GIFtS: 28
GCID: GC11P058346
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ZFP91-CNTF readthrough (non-protein coding)
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Aliases
for ZFP91-CNTF gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| ZFP91-CNTF Readthrough (Non-Protein Coding)1 2 |
| External Ids: | HGNC: 334411 | Entrez Gene: 3866072 | Ensembl: ENSG000002550737 | UniProtKB: H3BTR04 | | ORGUL members: | |
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| NONCODE:n406578 | |
Export aliases for ZFP91-CNTF gene to outside databasesPrevious GC identifers: GC11U900395 GC11P058123 GC11P058103
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Summaries
for ZFP91-CNTF gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ZFP91-CNTF:
This gene represents a read-through transcript composed of ZFP91 and CNTF sequence. This transcript is thought to benon-coding because it would be subject to nonsense-mediated mRNA decay (NMD). Read-through transcription of ZFP91 andCNTF has also been observed in mouse. (provided by RefSeq, Aug 2008)
Gene Wiki entry for ZFP91-CNTF
|
Genomic Views
for ZFP91-CNTF gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ZFP91-CNTF
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZFP91-CNTF
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZFP91-CNTF |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q12.2 Ensembl cytogenetic band: 11q12.1 HGNC cytogenetic band: 11q12.1ZFP91-CNTF Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P058346: view genomic region
(about GC identifiers)
Start:
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58,346,587 bp from pter |
End:
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58,393,206 bp from pter |
Size:
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46,620 bases |
Orientation:
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plus strand |
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Proteins
for ZFP91-CNTF gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: H3BTR0 (See
protein sequence)Recommended Name: Protein ZFP91-CNTF Size: 354 amino acids; 40605 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataZFP91-CNTF Protein expression data from MOPED and PaxDb: --
ENSEMBL proteins: ENSP00000455911 ENSP00000457288
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005622 | intracellular |
-- | -- |
ZFP91-CNTF for ontologies About GeneDecksing
ZFP91-CNTF Antibody Products:
Assay Products for ZFP91-CNTF: |
Protein
Domains /
Families
for ZFP91-CNTF gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZFP91-CNTF for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry H3BTR0ProtoNet protein and cluster: H3BTR0 |
Function
for ZFP91-CNTF gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFP91-CNTF |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003676 | nucleic acid binding |
-- | -- | | GO:0008270 | zinc ion binding |
-- | -- |
ZFP91-CNTF for ontologies About GeneDecksing
|
Pathways & Interactions
for ZFP91-CNTF gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZFP91-CNTF
|
Drugs & Compounds
for ZFP91-CNTF gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZFP91-CNTF
Search CenterWatch for drugs/clinical trials and news about ZFP91-CNTF 
|
Transcripts
for ZFP91-CNTF gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZFP91-CNTF gene: NM_170768.2 2 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000389919(uc010rkm.2) ENST00000422974
24/493 AceView cDNA sequences (see all 493): AK025502 BU788935 CA848275 BM698515 BE049230 AI742847 W76567 AI380912 BM684692 BQ026693 BM698641 BF447629 AW205804 BQ574132 AW135166 BE464855 BF223092 BU192588 BF516085 AI620699 AW275235 BF940716 BQ015036 BM548840
GeneLoc Exon Structure
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Expression
for ZFP91-CNTF gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZFP91-CNTF expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for ZFP91-CNTF
SABiosciences Custom PCR Arrays for ZFP91-CNTF
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZFP91-CNTF
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat ZFP91-CNTF | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZFP91-CNTF | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZFP91-CNTF | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFP91-CNTF |
Orthologs
for ZFP91-CNTF gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ZFP91-CNTF gene from 3/7 species (see all 7) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
Q5F394_CHICK6 |
Uncharacterized protein |
68(a) |
1 → many |
5(18105494-18120872) |
lizard
(Anolis carolinensis) |
Reptilia |
ZFP916 |
-- |
68(a) |
1 → many |
1(91283282-91297185) |
zebrafish
(Danio rerio) |
Actinopterygii |
si:ch211-113e8.106 |
si:ch211-113e8.10 |
32(a) |
1 → many |
1(40509087-40532942) |
ENSEMBL Gene Tree for ZFP91-CNTF (if available)
TreeFam Gene Tree for ZFP91-CNTF (if available) |
Paralogs
for ZFP91-CNTF gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZFP91-CNTF gene
- ZNF6922 ZNF6532 ZFP912 ENSG000002674772 ZNF2762
18/36 SIMAP similar genes for ZFP91-CNTF using alignment to 1 protein entry: H3BTR0_HUMAN(see all similar genes):ZFP91 ZNF55 ZNF692 A-328A3.4 DKFZp434J0650 ZFS-5
ZNF56 ZNFN1A2 kr-znf3 DKFZp686M04222 ZNF345 ZFP64
ZNF770 ZNF78L1 DKFZp666C237 HZF40 ZFS-2 ZNF
ZFP91-CNTF for paralogs About GeneDecksing
|
Genomic Variants
for ZFP91-CNTF gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for ZFP91-CNTF gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZFP91-CNTF for disorders About GeneDecksing
2  diseases for ZFP91-CNTF: About MalaCardsmelanoma leukemia
Export disorders for ZFP91-CNTF gene to outside databases
|
Publications
for ZFP91-CNTF gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZFP91-CNTF gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with ZFP91-CNTF) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of a novel human gene, ZFP91, involved in acute myelogenous leukemia. (PubMed id 12738986)1, 3 Unoki M.... Nakamura Y. (2003)
- Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (2006)
- Single-Nucleotide Polymorphisms in NAGNAG Acceptors Are Highly Predictive for Variations of Alternative Splicing. (PubMed id 16400609)1 Hiller M.... Platzer M. (2006)
- Identification of novel ARF binding proteins by two-hybrid screening. (PubMed id 16582619)1 Tompkins V.... Quelle D.E. (2006)
- Proteomics analysis of the centromere complex from HeLa interphase cells: UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase. (PubMed id 15009096)1 Obuse C....Yoda K. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)1 Beausoleil S.A....Gygi S.P. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Three classes of C2H2 zinc finger proteins. (PubMed id 11361095)1 Iuchi S. (2001)
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External Searches for ZFP91-CNTF gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing ZFP91-CNTF gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZFP91-CNTF gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZFP91-CNTF gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZFP91-CNTF | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZFP91-CNTF gene:
Search GeneIP for patents involving ZFP91-CNTF
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZFP91-CNTF gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZFP91-CNTF | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZFP91-CNTF | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZFP91-CNTF | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZFP91-CNTF | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZFP91-CNTF | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZFP91-CNTF |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZFP91-CNTF |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ZFP91-CNTF |
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