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ZFP37 Gene

protein-coding   GIFtS: 54
GCID: GC09M115800

ZFP37 Zinc Finger Protein

(Previous names: zinc finger protein homologous to Zfp37 in mouse, zinc finger...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
ZFP37 Zinc Finger Protein1 2     zfp-372
Zinc Finger Protein Homologous To Zfp37 In Mouse1 2     Zinc Finger Protein 37 Homolog2
Zinc Finger Protein 37 Homolog (Mouse)1     Zfp-373
ZNF9062     

External Ids:    HGNC: 128631   Entrez Gene: 75392   Ensembl: ENSG000001368667   OMIM: 6029515   UniProtKB: Q9Y6Q33   

Export aliases for ZFP37 gene to outside databases

Previous GC identifers: GC09M106602 GC09M107536 GC09M109217 GC09M111140 GC09M111141 GC09M112883 GC09M114840 GC09M085402


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for ZFP37 Gene:
This gene encodes a transcription factor that belongs to a large family of zinc finger proteins. A similar protein
in mouse is thought to play a role in regulating the structures of the nucleolus and centromere in neurons.
Alternate splicing results in multiple transcript variants. (provided by RefSeq, Sep 2013)

GeneCards Summary for ZFP37 Gene:
ZFP37 (ZFP37 zinc finger protein) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF436.

UniProtKB/Swiss-Prot: ZFP37_HUMAN, Q9Y6Q3
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000009.11  NC_018920.2  NT_008470.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZFP37 gene promoter:
         Nkx3-1   RP58   RFX1   Nkx3-1 v4   Nkx3-1 v1   HNF-1A   YY1   Nkx3-1 v2   HNF-1   Nkx3-1 v3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZFP37 promoter sequence
   Search Chromatin IP Primers for ZFP37

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZFP37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q32   Ensembl cytogenetic band:  9q32   HGNC cytogenetic band: 9q32

ZFP37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZFP37 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M115800:  view genomic region     (about GC identifiers)

Start:
115,800,660 bp from pter      End:
115,819,039 bp from pter
Size:
18,380 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZFP37_HUMAN, Q9Y6Q3 (See protein sequence)
Recommended Name: Zinc finger protein 37 homolog  
Size: 630 amino acids; 71209 Da
Caution: It is uncertain whether Met-1 or Met-34 is the initiator. Orthologous sequences start at a downstream Met
Secondary accessions: A0AVJ9 B4DVX4 Q5T7Q4
Alternative splicing: 2 isoforms:  Q9Y6Q3-1   Q9Y6Q3-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZFP37: NX_Q9Y6Q3

Explore proteomics data for ZFP37 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZFP37 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001269444.1  NP_001269447.1  NP_003399.1  

    ENSEMBL proteins: 
     ENSP00000363344   ENSP00000451310   ENSP00000452552  
    Reactome Protein details: Q9Y6Q3

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9Y6Q3

    ProtoNet protein and cluster: Q9Y6Q3

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: ZFP37_HUMAN, Q9Y6Q3
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 12 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZFP37           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZFP37_HUMAN, Q9Y6Q3
    Function: May be involved in transcriptional regulation

         Genatlas biochemistry entry for ZFP37:
    zinc finger protein 37,with a Kruppel-associated box domain (KRAB domain),expressed in fetal cartilage

         Gene Ontology (GO): 5 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity NAS9585434
    GO:0008270zinc ion binding NAS9585434
    GO:0046872metal ion binding ----
         
    Find genes that share ontologies with ZFP37           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZFP37:
     Decreased viability  Synthetic lethal with Ras 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZFP37

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    hsa-mir-935 (MIRT036645), hsa-mir-320a (MIRT044388)

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    1 qRT-PCR Assays for microRNA that regulate ZFP37:
    hsa-miR-188-3p
    SwitchGear 3'UTR luciferase reporter plasmidZFP37 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZFP37_HUMAN, Q9Y6Q3: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZFP37           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZFP37 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZFP37           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZFP37
        Generic Transcription Pathway


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZFP37
    Interactions:

        Search GeneGlobe Interaction Network for ZFP37

    1 Interacting protein for ZFP37 (Q9Y6Q33) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GRB2P629933I2D: score=2 
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated NAS9585434

    Find genes that share ontologies with ZFP37           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZFP37



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZFP37 gene (3 alternative transcripts): 
    NM_001282515.1  NM_001282518.1  NM_003408.2  

    Unigene Cluster for ZFP37:

    ZFP37 zinc finger protein
    Hs.150406  [show with all ESTs]
    Unigene Representative Sequence: AF022158
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000374227(uc004bgm.1 uc011lwz.1 uc011lxa.1) ENST00000555206
    ENST00000553380
    miRNA
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    hsa-miR-188-3p
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    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat ZFP37
      QuantiFast Probe-based Assays in human, mouse, rat ZFP37

    Additional mRNA sequence: 

    AF022158.1 AK301275.1 BC126390.1 BC144145.1 

    6 DOTS entries:

    DT.441898  DT.121168172  DT.100739140  DT.121463026  DT.97782512  DT.97855790 

    14 AceView cDNA sequences:

    BM806394 NM_003408 AA418079 AI002852 AA418225 AF022158 CB132305 AI005346 
    BF438076 BM805156 BQ440923 BX505567 CD689184 CD617086 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ZFP37    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
    SP1:                                    
    SP2:                                    


    ECgene alternative splicing isoforms for ZFP37

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZFP37 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGGTTGCCA
    ZFP37 Expression
    About this image

    ZFP37 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZFP37 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.150406

    UniProtKB/Swiss-Prot: ZFP37_HUMAN, Q9Y6Q3
    Tissue specificity: Expressed at low level in several tissues including fetal cartilage

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZFP37 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp371 , 5 zinc finger protein 371, 5 80.73(n)1
    75.3(a)1
      4 (33.04 cM)5
    226961  NM_009554.31  NP_033580.31 
     621895405 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    43(a)
    1 → many
    1(60057410-60059657)


    ENSEMBL Gene Tree for ZFP37 (if available)
    TreeFam Gene Tree for ZFP37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZFP37 gene
    ZNF4362  ZNF1802  ZNF3222  ZNF712  ZNF5722  ZFP22  ZKSCAN72  ZNF6782  
    ZNF7742  ZNF102  ZSCAN22  ZNF8522  ZNF3292  ZNF5442  ZFP32  ZNF6062  
    ZNF5022  ZNF8352  
    Selected SIMAP similar genes for ZFP37 using alignment to 2 protein entries:     ZFP37_HUMAN (see all proteins) (see all similar genes):
    kr-znf3    ZNF78L1    ZFP41    ZFS-4    ZNF818P    HZF36
    ZNF146    ZNF436    ZSCAN31    ZNF664    ZNF    DKFZp313M0722
    ZNF232    ZNF32    ZNF323    ZNF826P    DKFZp666M039    DKFZp686M04222

    Find genes that share paralogs with ZFP37           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for ZFP37
    PGOHUM00000248282 PGOHUM00000236621


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZFP37 (see all 351)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1474514741,2
    C--115803679(+) TCCAGC/TAAATA 1 -- ds50010--------
    rs1863722181,2
    --115803695(+) CAATAC/TTGAGC 1 -- ds50010--------
    rs1908881561,2
    --115803700(+) TTGAGC/TGAGAA 1 -- ds50010--------
    rs1166138851,2
    C,F--115803732(+) TCATTC/TGAATT 1 -- ds50011Minor allele frequency- T:0.02WA 118
    rs1400145651,2
    --115803734(+) ATTCGA/GATTCC 1 -- ds50010--------
    rs169177111,2
    C,F,H--115803746(+) TGATTG/CAGGTG 1 -- ds500120Minor allele frequency- C:0.04NA NS EA WA 2400
    rs109816191,2
    A--115803835(+) ATTCAA/TCATCA 1 -- ds50010--------
    rs1500001981,2
    --115803971(+) TACTAC/TATACT 1 -- ds50010--------
    rs1822001631,2
    --115804086(+) ACCTTA/TAATAA 1 -- ds50010--------
    rs1450140781,2
    --115804198(+) CCAGTC/TCTATA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZFP37 (115800660 - 115819039 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for ZFP37 (see all 14):    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv509318CNV Insertion20534489
    nsv508563CNV Loss20534489
    nsv6672CNV Loss18451855
    nsv517282CNV Loss19592680
    nsv466491CNV Loss19166990
    dgv943n27CNV Loss19166990
    nsv831691CNV Loss17160897
    dgv1232n67CNV Gain20364138
    nsv525545CNV Gain19592680
    nsv8562CNV Gain+Loss18304495

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 602951    OMIM disorders: --


    Find genes that share disorders with ZFP37           About GenesLikeMe


    Export disorders for ZFP37 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZFP37 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZFP37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning, characterization, and chromosomal assignment of the human ortholog of murine Zfp-37, a candidate gene for Nager syndrome. (PubMed id 9585434)1, 2 Dreyer S.D.... Lee B. (Mamm. Genome 1998)
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    3. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)2 Humphray S.J.... Dunham I. (Nature 2004)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. The centromeric/nucleolar chromatin protein ZFP-37 may function to specify neuronal nuclear domains. (PubMed id 9535899)1 Payen E....Galjart N. (J. Biol. Chem. 1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
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      Query String
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    OMIM
    NCBI Bookshelf
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 7539 HGNC: 12863 AceView: ZFP37 Ensembl:ENSG00000136866 euGenes: HUgn7539
    ECgene: ZFP37 H-InvDB: ZFP37

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZFP37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZFP37 gene:
    Search GeneIP for patents involving ZFP37

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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