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Aliases for ZFP3 Gene

Aliases for ZFP3 Gene

  • ZFP3 Zinc Finger Protein 2 3 5
  • Zinc Finger Protein Homologous To Zfp-3 In Mouse 2 3
  • Zinc Finger Protein 752 3 4
  • ZNF752 3 4
  • Zfp-3 3 4
  • Zinc Finger Protein 3 Homolog (Mouse) 2
  • Zinc Finger Protein 3 Homolog 3
  • Zinc Finger Protein-3 3

External Ids for ZFP3 Gene

Previous GeneCards Identifiers for ZFP3 Gene

  • GC17U990112
  • GC17P004923
  • GC17P004872
  • GC17P004981

Summaries for ZFP3 Gene

GeneCards Summary for ZFP3 Gene

ZFP3 (ZFP3 Zinc Finger Protein) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF665.

UniProtKB/Swiss-Prot for ZFP3 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFP3 Gene

Genomics for ZFP3 Gene

Regulatory Elements for ZFP3 Gene

Enhancers for ZFP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F004856 0.8 Ensembl ENCODE 15.8 -219.5 -219473 5.3 ATF1 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 FOS SP5 NFYC CHRNE C17orf107 ZFP3 MINK1 PLD2 ARRB2 LOC101559451 PELP1 RPS12P29 CXCL16
GH17F005120 0.5 ENCODE 11.9 +42.9 42887 1.4 HLF MNT ZFP3 GC17P005122 USP6
GH17F005122 0.2 ENCODE 11.9 +44.6 44581 0.6 PKNOX1 POLR2A SCRT2 FOS ZFP3 SPAG7 SCIMP GC17P005122 ZNF232
GH17F005123 1 ENCODE 11.9 +44.1 44105 0.3 ZFHX2 EGR2 ZFP3 GC17P005122 USP6
GH17F005110 0.6 ENCODE 11.7 +33.7 33726 2.1 HDGF CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC101928000 ZNF594 LOC100130950 ZFP3 CAMTA2 DERL2 SCIMP ENSG00000263272 NUP88 SPAG7
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZFP3 on UCSC Golden Path with GeneCards custom track

Promoters for ZFP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001533859 253 1800 HDGF PKNOX1 TBL1XR1 SIN3A RAD21 ZBTB40 ETS1 ELK1 ZNF143 ZNF207

Genomic Location for ZFP3 Gene

Chromosome:
17
Start:
5,078,248 bp from pter
End:
5,096,374 bp from pter
Size:
18,127 bases
Orientation:
Plus strand

Genomic View for ZFP3 Gene

Genes around ZFP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFP3 Gene

Proteins for ZFP3 Gene

  • Protein details for ZFP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NJ6-ZFP3_HUMAN
    Recommended name:
    Zinc finger protein 3 homolog
    Protein Accession:
    Q96NJ6
    Secondary Accessions:
    • A5PLL4

    Protein attributes for ZFP3 Gene

    Size:
    502 amino acids
    Molecular mass:
    57662 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZFP3 Gene

Post-translational modifications for ZFP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZFP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZFP3 Gene

Domains & Families for ZFP3 Gene

Gene Families for ZFP3 Gene

Protein Domains for ZFP3 Gene

Suggested Antigen Peptide Sequences for ZFP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NJ6

UniProtKB/Swiss-Prot:

ZFP3_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 13 C2H2-type zinc fingers.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 13 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZFP3: view

Function for ZFP3 Gene

Molecular function for ZFP3 Gene

GENATLAS Biochemistry:
zinc finger protein 3
UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZFP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZFP3: view
genes like me logo Genes that share phenotypes with ZFP3: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZFP3 Gene

Localization for ZFP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZFP3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZFP3 Gene COMPARTMENTS Subcellular localization image for ZFP3 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for ZFP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZFP3: view

Pathways & Interactions for ZFP3 Gene

SuperPathways for ZFP3 Gene

No Data Available

Interacting Proteins for ZFP3 Gene

Gene Ontology (GO) - Biological Process for ZFP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IBA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ZFP3: view

No data available for Pathways by source and SIGNOR curated interactions for ZFP3 Gene

Transcripts for ZFP3 Gene

mRNA/cDNA for ZFP3 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(40) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFP3 Gene

ZFP3 zinc finger protein:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZFP3 Gene

No ASD Table

Relevant External Links for ZFP3 Gene

GeneLoc Exon Structure for
ZFP3
ECgene alternative splicing isoforms for
ZFP3

Expression for ZFP3 Gene

mRNA expression in normal human tissues for ZFP3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZFP3 Gene

This gene is overexpressed in Retina (59.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZFP3 Gene



Protein tissue co-expression partners for ZFP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZFP3 Gene:

ZFP3

SOURCE GeneReport for Unigene cluster for ZFP3 Gene:

Hs.48832
genes like me logo Genes that share expression patterns with ZFP3: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZFP3 Gene

Orthologs for ZFP3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZFP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZFP3 34 35
  • 99.8 (n)
cow
(Bos Taurus)
Mammalia ZFP3 34 35
  • 91.63 (n)
mouse
(Mus musculus)
Mammalia Zfp3 34 16 35
  • 84.1 (n)
rat
(Rattus norvegicus)
Mammalia Zfp3 34
  • 83.86 (n)
dog
(Canis familiaris)
Mammalia ZFP3 34 35
  • 75.7 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 49 (a)
ManyToMany
Species where no ortholog for ZFP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZFP3 Gene

ENSEMBL:
Gene Tree for ZFP3 (if available)
TreeFam:
Gene Tree for ZFP3 (if available)

Paralogs for ZFP3 Gene

(479) SIMAP similar genes for ZFP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZFP3: view

Variants for ZFP3 Gene

Sequence variations from dbSNP and Humsavar for ZFP3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10438722 -- 5,088,399(+) tctag(C/T)gagat intron-variant
rs1047966 -- 5,095,912(+) CTCAC(G/T)TCTCA utr-variant-3-prime
rs10521138 -- 5,093,482(+) GCCAT(C/T)TTTCC utr-variant-3-prime
rs10744993 -- 5,081,275(+) TTTTA(C/G)TAGAG intron-variant
rs10744994 -- 5,094,492(+) GCCCA(A/G)CAGGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZFP3 Gene

Variant ID Type Subtype PubMed ID
nsv1134589 CNV deletion 24896259
nsv509648 CNV insertion 20534489
nsv574273 CNV gain 21841781
nsv827868 CNV gain 20364138

Variation tolerance for ZFP3 Gene

Residual Variation Intolerance Score: 45% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.28; 25.53% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZFP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZFP3 Gene

Disorders for ZFP3 Gene

Relevant External Links for ZFP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFP3

No disorders were found for ZFP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFP3 Gene

Publications for ZFP3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZFP3 Gene

Sources for ZFP3 Gene

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