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Aliases for ZFP28 Gene

Aliases for ZFP28 Gene

  • ZFP28 Zinc Finger Protein 2 3 5
  • Krueppel-Like Zinc Finger Factor X6 3 4
  • Zfp-28 3 4
  • Zinc Finger Protein 28 Homolog (Mouse) 2
  • Zinc Finger Protein 28 Homolog 3
  • Zinc Finger Factor X6 3
  • KIAA1431 4
  • Mkr5 3

External Ids for ZFP28 Gene

Previous GeneCards Identifiers for ZFP28 Gene

  • GC19U990300
  • GC19P057504
  • GC19P061592
  • GC19P061618
  • GC19P061609
  • GC19P061742
  • GC19P057050
  • GC19P053360

Summaries for ZFP28 Gene

GeneCards Summary for ZFP28 Gene

ZFP28 (ZFP28 Zinc Finger Protein) is a Protein Coding gene. Diseases associated with ZFP28 include Alternating Hemiplegia Of Childhood. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF471.

UniProtKB/Swiss-Prot for ZFP28 Gene

  • May be involved in transcriptional regulation. May have a role in embryonic development.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFP28 Gene

Genomics for ZFP28 Gene

Regulatory Elements for ZFP28 Gene

Enhancers for ZFP28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G056594 1 ENCODE 50.8 +57.7 57725 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF17 ENSG00000269696 ZNF549 ZNF773 ZNF543 U2AF2 ZFP28 ZNF667 ZNF470 FIZ1
GH19G056403 1.1 ENCODE 30.5 -133.6 -133567 2.0 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF416 ZNF143 ZNF582-AS1 ZFP28 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696
GH19G056392 1.1 ENCODE 22.2 -144.3 -144260 1.5 CREB3L1 ARNT SIN3A ZNF2 YY1 ZNF766 ZNF416 ZNF143 ZNF207 KLF13 ZNF582-AS1 FIZ1 ZNF543 ZNF471 ZNF264 ZNF542P ZNF470 U2AF2 ENSG00000269696 ZFP28
GH19G055579 1.1 ENCODE 22.1 -956.5 -956517 3.3 HDGF PKNOX1 FOXA2 ARNT WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 FIZ1 ZNF471 ZNF542P ZNF470 ENSG00000269696 ZFP28 ZNF583 ZNF582-AS1 ZNF580 LOC729999
GH19G055671 1.4 ENCODE dbSUPER 13.9 -861.2 -861214 10.0 HDGF PKNOX1 ARNT CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF471 ZNF583 ZNF470 ZNF582-AS1 ENSG00000269696 ZNF542P ZNF667-AS1 ENSG00000267224 ZFP28 ZNF667
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZFP28 on UCSC Golden Path with GeneCards custom track

Promoters for ZFP28 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111758 985 1800 ZNF76 KLF17 SIN3A ZBTB40 ETS1 GLIS2 SCRT2 ZNF350 ZNF143 KLF7

Genomic Location for ZFP28 Gene

Chromosome:
19
Start:
56,537,716 bp from pter
End:
56,556,810 bp from pter
Size:
19,095 bases
Orientation:
Plus strand

Genomic View for ZFP28 Gene

Genes around ZFP28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFP28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFP28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFP28 Gene

Proteins for ZFP28 Gene

  • Protein details for ZFP28 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHY6-ZFP28_HUMAN
    Recommended name:
    Zinc finger protein 28 homolog
    Protein Accession:
    Q8NHY6
    Secondary Accessions:
    • A0JNV6
    • K7ES88
    • Q8NHU8
    • Q9BY30
    • Q9P2B6

    Protein attributes for ZFP28 Gene

    Size:
    868 amino acids
    Molecular mass:
    98705 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92669.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ZFP28 Gene

    Alternative splice isoforms for ZFP28 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZFP28 Gene

Post-translational modifications for ZFP28 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZFP28 Gene

No data available for DME Specific Peptides for ZFP28 Gene

Domains & Families for ZFP28 Gene

Gene Families for ZFP28 Gene

Protein Domains for ZFP28 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NHY6

UniProtKB/Swiss-Prot:

ZFP28_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZFP28: view

Function for ZFP28 Gene

Molecular function for ZFP28 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation. May have a role in embryonic development.

Gene Ontology (GO) - Molecular Function for ZFP28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZFP28: view
genes like me logo Genes that share phenotypes with ZFP28: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZFP28 Gene

Localization for ZFP28 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZFP28 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZFP28 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for ZFP28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZFP28: view

Pathways & Interactions for ZFP28 Gene

SuperPathways for ZFP28 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZFP28: view

Pathways by source for ZFP28 Gene

2 Reactome pathways for ZFP28 Gene

Gene Ontology (GO) - Biological Process for ZFP28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA,IEA --
genes like me logo Genes that share ontologies with ZFP28: view

No data available for SIGNOR curated interactions for ZFP28 Gene

Transcripts for ZFP28 Gene

Unigene Clusters for ZFP28 Gene

ZFP28 zinc finger protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZFP28 Gene

No ASD Table

Relevant External Links for ZFP28 Gene

GeneLoc Exon Structure for
ZFP28
ECgene alternative splicing isoforms for
ZFP28

Expression for ZFP28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZFP28 Gene

Protein differential expression in normal tissues from HIPED for ZFP28 Gene

This gene is overexpressed in Plasma (31.9), Pancreatic juice (26.5), and Heart (10.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZFP28 Gene



Protein tissue co-expression partners for ZFP28 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZFP28 Gene:

ZFP28

SOURCE GeneReport for Unigene cluster for ZFP28 Gene:

Hs.14794

Evidence on tissue expression from TISSUES for ZFP28 Gene

  • Heart(4.2)
  • Nervous system(4.2)
  • Muscle(4.1)
genes like me logo Genes that share expression patterns with ZFP28: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFP28 Gene

Orthologs for ZFP28 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZFP28 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZFP28 34 35
  • 99.46 (n)
dog
(Canis familiaris)
Mammalia ZFP28 34 35
  • 87.14 (n)
mouse
(Mus musculus)
Mammalia Zfp28 34 16 35
  • 79.29 (n)
rat
(Rattus norvegicus)
Mammalia LOC102548693 34
  • 78.47 (n)
cow
(Bos Taurus)
Mammalia LOC100301148 34
  • 71.49 (n)
ZFP28 35
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZFP28 35
  • 44 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 48 (a)
OneToMany
-- 35
  • 35 (a)
OneToMany
Species where no ortholog for ZFP28 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZFP28 Gene

ENSEMBL:
Gene Tree for ZFP28 (if available)
TreeFam:
Gene Tree for ZFP28 (if available)

Paralogs for ZFP28 Gene

(517) SIMAP similar genes for ZFP28 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for ZFP28 Gene

genes like me logo Genes that share paralogs with ZFP28: view

Variants for ZFP28 Gene

Sequence variations from dbSNP and Humsavar for ZFP28 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000067385 -- 56,559,192(+) TTGAA(A/C)TTCTG utr-variant-3-prime
rs1000284618 -- 56,558,860(+) ATTTC(-/TCATT)TTAAG utr-variant-3-prime
rs1000419703 -- 56,558,288(+) ACAAC(A/G)TATTT utr-variant-3-prime
rs1000533175 -- 56,552,316(+) GTAAA(G/T)AATAT intron-variant, utr-variant-3-prime
rs1000542410 -- 56,551,996(+) TAGTC(C/T)AGTAT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZFP28 Gene

Variant ID Type Subtype PubMed ID
dgv6591n54 CNV loss 21841781
nsv1055357 CNV gain 25217958
nsv524734 CNV loss 19592680
nsv828651 CNV gain 20364138

Variation tolerance for ZFP28 Gene

Residual Variation Intolerance Score: 27.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.83; 97.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZFP28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFP28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZFP28 Gene

Disorders for ZFP28 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZFP28 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
alternating hemiplegia of childhood
  • ahc
- elite association - COSMIC cancer census association via MalaCards
Search ZFP28 in MalaCards View complete list of genes associated with diseases

Relevant External Links for ZFP28

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFP28
genes like me logo Genes that share disorders with ZFP28: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZFP28 Gene

Publications for ZFP28 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Identification and characterization of two novel zinc finger genes, ZNF359 and ZFP28, in human development. (PMID: 12127974) Zhou L. … Wu X. (Biochem. Biophys. Res. Commun. 2002) 3 4 64
  3. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
  4. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3 64
  5. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3 64

Products for ZFP28 Gene

Sources for ZFP28 Gene

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