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Aliases for ZFHX4-AS1 Gene

Subcategory (RNA class) for ZFHX4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFHX4-AS1 Gene

  • ZFHX4 Antisense RNA 1 2 3 5
  • ZFHX4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZFHX4-AS1 Gene

Previous GeneCards Identifiers for ZFHX4-AS1 Gene

  • GC08M077405

Summaries for ZFHX4-AS1 Gene

GeneCards Summary for ZFHX4-AS1 Gene

ZFHX4-AS1 (ZFHX4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFHX4-AS1 Gene

Genomics for ZFHX4-AS1 Gene

Regulatory Elements for ZFHX4-AS1 Gene

Enhancers for ZFHX4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around ZFHX4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZFHX4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for ZFHX4-AS1 Gene

Chromosome:
8
Start:
76,491,200 bp from pter
End:
76,683,278 bp from pter
Size:
192,079 bases
Orientation:
Minus strand

Genomic View for ZFHX4-AS1 Gene

Genes around ZFHX4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFHX4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFHX4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFHX4-AS1 Gene

Proteins for ZFHX4-AS1 Gene

Post-translational modifications for ZFHX4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFHX4-AS1 Gene

Domains & Families for ZFHX4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFHX4-AS1 Gene

Function for ZFHX4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFHX4-AS1 Gene

Localization for ZFHX4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFHX4-AS1 Gene

Pathways & Interactions for ZFHX4-AS1 Gene

SuperPathways for ZFHX4-AS1 Gene

No Data Available

Interacting Proteins for ZFHX4-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFHX4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFHX4-AS1 Gene

Drugs & Compounds for ZFHX4-AS1 Gene

No Compound Related Data Available

Transcripts for ZFHX4-AS1 Gene

mRNA/cDNA for ZFHX4-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFHX4-AS1 Gene

ZFHX4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFHX4-AS1 Gene

No ASD Table

Relevant External Links for ZFHX4-AS1 Gene

GeneLoc Exon Structure for
ZFHX4-AS1
ECgene alternative splicing isoforms for
ZFHX4-AS1

Expression for ZFHX4-AS1 Gene

mRNA expression in normal human tissues for ZFHX4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZFHX4-AS1 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.0), Brain - Amygdala (x4.7), Brain - Nucleus accumbens (basal ganglia) (x4.7), and Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for ZFHX4-AS1 Gene:

Hs.596420
genes like me logo Genes that share expression patterns with ZFHX4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZFHX4-AS1 Gene

Orthologs for ZFHX4-AS1 Gene

Evolution for ZFHX4-AS1 Gene

ENSEMBL:
Gene Tree for ZFHX4-AS1 (if available)
TreeFam:
Gene Tree for ZFHX4-AS1 (if available)

No data available for Orthologs for ZFHX4-AS1 Gene

Paralogs for ZFHX4-AS1 Gene

No data available for Paralogs for ZFHX4-AS1 Gene

Variants for ZFHX4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZFHX4-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1158972 -- 76,610,600(-) ATGGC(A/T)TTTAA downstream-variant-500B
rs1347279 -- 76,610,598(-) GGCAT(C/T)TAAAA downstream-variant-500B
rs1368847 -- 76,655,526(-) TTTAA(G/T)TTTAA intron-variant
rs1368848 -- 76,654,230(-) TTGAG(A/C)CATGG intron-variant
rs1433954 -- 76,663,429(-) GTAAA(C/T)CCGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZFHX4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2737204 CNV deletion 23290073
esv3891416 CNV gain 25118596
nsv398363 CNV deletion 16902084

Relevant External Links for ZFHX4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFHX4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFHX4-AS1 Gene

Disorders for ZFHX4-AS1 Gene

Relevant External Links for ZFHX4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFHX4-AS1

No disorders were found for ZFHX4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFHX4-AS1 Gene

Publications for ZFHX4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for ZFHX4-AS1 Gene

Sources for ZFHX4-AS1 Gene

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