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Aliases for ZFHX4-AS1 Gene

Subcategory (RNA class) for ZFHX4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFHX4-AS1 Gene

  • ZFHX4 Antisense RNA 1 2 3 5
  • ZFHX4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZFHX4-AS1 Gene

Previous GeneCards Identifiers for ZFHX4-AS1 Gene

  • GC08M077405

Summaries for ZFHX4-AS1 Gene

GeneCards Summary for ZFHX4-AS1 Gene

ZFHX4-AS1 (ZFHX4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZFHX4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFHX4-AS1 Gene

Genomics for ZFHX4-AS1 Gene

Regulatory Elements for ZFHX4-AS1 Gene

Enhancers for ZFHX4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H076778 2 VISTA ENCODE 4.7 -95.5 -95508 1 JUND POLR2A FOXP2 ZFHX4-AS1 GC08M076785 GC08M076743
GH08H076676 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.3 +5.2 5211 3 CTCF PKNOX1 TAF1 ZSCAN4 ZNF76 GLI4 RAD21 BCL11B GLIS2 ZNF316 ZFHX4-AS1 ZFHX4 MRPL9P1
GH08H076698 1.8 ENCODE dbSUPER 4.5 -16.3 -16300 2 PRDM6 POLR2A ZNF366 ZNF341 PRDM10 RCOR1 EZH2 ZFHX4-AS1 GC08P076707
GH08H076685 2.7 VISTA Ensembl ENCODE dbSUPER 0.7 -3.8 -3814 2 ZNF146 ZNF10 FEZF1 ZNF398 ZNF843 OSR2 ZNF664 CTBP1 PRDM6 GLIS1 ZFHX4-AS1 GC08P076707
GH08H076680 2.4 Ensembl ENCODE dbSUPER 0.7 +0.4 386 5 PKNOX1 ZSCAN4 INSM2 ZNF76 FEZF1 ZNF2 RAD21 YY1 GLIS2 ZNF366 HIGD1AP18 ZFHX4 ZFHX4-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZFHX4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZFHX4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000226046 878 3201 PKNOX1 ZSCAN4 INSM2 ZNF76 FEZF1 ZNF2 RAD21 YY1 GLIS2 ZNF366

Genomic Location for ZFHX4-AS1 Gene

Chromosome:
8
Start:
76,491,200 bp from pter
End:
76,683,278 bp from pter
Size:
192,079 bases
Orientation:
Minus strand

Genomic View for ZFHX4-AS1 Gene

Genes around ZFHX4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFHX4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFHX4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFHX4-AS1 Gene

Proteins for ZFHX4-AS1 Gene

Post-translational modifications for ZFHX4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFHX4-AS1 Gene

Domains & Families for ZFHX4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFHX4-AS1 Gene

Function for ZFHX4-AS1 Gene

Phenotypes From GWAS Catalog for ZFHX4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFHX4-AS1 Gene

Localization for ZFHX4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFHX4-AS1 Gene

Pathways & Interactions for ZFHX4-AS1 Gene

SuperPathways for ZFHX4-AS1 Gene

No Data Available

Interacting Proteins for ZFHX4-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFHX4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFHX4-AS1 Gene

Drugs & Compounds for ZFHX4-AS1 Gene

No Compound Related Data Available

Transcripts for ZFHX4-AS1 Gene

mRNA/cDNA for ZFHX4-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFHX4-AS1 Gene

ZFHX4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFHX4-AS1 Gene

No ASD Table

Relevant External Links for ZFHX4-AS1 Gene

GeneLoc Exon Structure for
ZFHX4-AS1
ECgene alternative splicing isoforms for
ZFHX4-AS1

Expression for ZFHX4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZFHX4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZFHX4-AS1 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.0), Brain - Amygdala (x4.7), Brain - Nucleus accumbens (basal ganglia) (x4.7), and Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for ZFHX4-AS1 Gene:

Hs.596420
genes like me logo Genes that share expression patterns with ZFHX4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFHX4-AS1 Gene

Orthologs for ZFHX4-AS1 Gene

Evolution for ZFHX4-AS1 Gene

ENSEMBL:
Gene Tree for ZFHX4-AS1 (if available)
TreeFam:
Gene Tree for ZFHX4-AS1 (if available)

No data available for Orthologs for ZFHX4-AS1 Gene

Paralogs for ZFHX4-AS1 Gene

No data available for Paralogs for ZFHX4-AS1 Gene

Variants for ZFHX4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZFHX4-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000036541 -- 76,646,946(+) TTAAA(A/G)GCTTA intron-variant
rs1000052244 -- 76,618,563(+) ATGCC(A/G)CATGG intron-variant
rs1000057760 -- 76,668,996(+) AAGTG(C/G)ATATT intron-variant
rs1000108009 -- 76,624,527(+) GTGGC(A/G)GCATG intron-variant
rs1000160215 -- 76,650,072(+) ATCTT(G/T)TAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZFHX4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2737204 CNV deletion 23290073
esv3891416 CNV gain 25118596
nsv398363 CNV deletion 16902084

Relevant External Links for ZFHX4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFHX4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFHX4-AS1 Gene

Disorders for ZFHX4-AS1 Gene

Relevant External Links for ZFHX4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFHX4-AS1

No disorders were found for ZFHX4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFHX4-AS1 Gene

Publications for ZFHX4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ZFHX4-AS1 Gene

Sources for ZFHX4-AS1 Gene

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