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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZFHX2 Gene

protein-coding   GIFtS: 39
GCID: GC14M023990

Zinc Finger Homeobox 2

(Previous name: zinc finger protein 409)
(Previous symbol: ZNF409)
  Search for ZFHX2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger Homeobox 21 2     ZFH-52
ZNF4091 2 3     Zinc Finger Homeobox Protein 22
Zinc Finger Protein 4091 2     KIAA10563
Zinc Finger Homeodomain Protein 22 3     KIAA17623
ZFH-22 3     

External Ids:    HGNC: 201521   Entrez Gene: 854462   Ensembl: ENSG000001363677   UniProtKB: Q9C0A13   

Export aliases for ZFHX2 gene to outside databases

Previous GC identifers: GC14M017777 GC14M021981 GC14M021982 GC14M021983 GC14M023059


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZFHX2 Gene: 
ZFHX2 (zinc finger homeobox 2) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZFHX4.

UniProtKB/Swiss-Prot: ZFHX2_HUMAN, Q9C0A1
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  NC_018925.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZFHX2 gene promoter:
         AP-2gamma   Meis-1b   GATA-2   GATA-1   YY1   HOXA5   AP-2beta   AP-2alpha   Meis-1   AP-2alphaA   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ZFHX2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZFHX2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.2

ZFHX2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZFHX2 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M023990:  view genomic region     (about GC identifiers)

Start:
23,990,064 bp from pter      End:
24,025,401 bp from pter
Size:
35,338 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZFHX2_HUMAN, Q9C0A1 (See protein sequence)
Recommended Name: Zinc finger homeobox protein 2  
Size: 2572 amino acids; 274176 Da
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=BAA83008.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: Q9UPU6
Alternative splicing: 2 isoforms:  Q9C0A1-1   Q9C0A1-2   

Explore the universe of human proteins at neXtProt for ZFHX2: NX_Q9C0A1

Explore proteomics data for ZFHX2 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9C0A1

  • ZFHX2 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZFHX2 Protein Expression
    REFSEQ proteins: NP_207646.2  
    ENSEMBL proteins: 
     ENSP00000413418   ENSP00000409464   ENSP00000451342  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    ZFHX2 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZFHX: Homeoboxes / ZF class
    ZNF: Zinc fingers, C2H2-type

    5/8 InterPro protein domains (see all 8):
     IPR027028 ZFHX2
     IPR015880 Znf_C2H2-like
     IPR003604 Znf_U1
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR017970 Homeobox_CS

    Graphical View of Domain Structure for InterPro Entry Q9C0A1

    ProtoNet protein and cluster: Q9C0A1

    UniProtKB/Swiss-Prot: ZFHX2_HUMAN, Q9C0A1
    Similarity: Contains 13 C2H2-type zinc fingers
    Similarity: Contains 3 homeobox DNA-binding domains


    ZFHX2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZFHX2_HUMAN, Q9C0A1
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding ----
    GO:0003700sequence-specific DNA binding transcription factor activity IEA--
    GO:0003779actin binding ----
    GO:0008270zinc ion binding IEA--
         
    ZFHX2 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZFHX2:
     Increased gamma-H2AX phosphory 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Zfhx2):
     no phenotypic analysis 

    ZFHX2 for phenotypes           About GeneDecksing

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZFHX2

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent ----
    GO:0007010cytoskeleton organization ----

    ZFHX2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZFHX2

    Search CenterWatch for drugs/clinical trials and news about ZFHX2

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZFHX2 gene: 
    NM_033400.2  

    Unigene Cluster for ZFHX2:

    Zinc finger homeobox 2
    Hs.508937  [show with all ESTs]
    Unigene Representative Sequence: NM_033400
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000419474(uc010akq.3 uc001wke.3) ENST00000606808 ENST00000412565
    ENST00000555334
    miRNA
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    hsa-miR-4328 hsa-miR-1224-3p hsa-miR-765 hsa-miR-1260b hsa-miR-486-3p hsa-miR-650 hsa-miR-3167 hsa-miR-654-5p
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    Additional mRNA sequence: 

    AB028979.1 AB051549.1 BC144336.1 BC150606.1 

    6 DOTS entries:

    DT.105925  DT.40310148  DT.75121693  DT.92037350  DT.91868937  DT.92424855 

    24/33 AceView cDNA sequences (see all 33):

    BM142009 BM928251 CK819828 AB051549 AV704837 BU688647 BE393586 BM930209 
    AA210939 BE673662 BM141735 BX283301 CK819827 BQ889378 CF130285 AA976107 
    AI582864 AA535789 BM683686 AW470308 AA781938 AI216808 AI803509 BU953894 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZFHX2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATGTTCCACT
    ZFHX2 Expression
    About this image


    See ZFHX2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZFHX2

    SOURCE GeneReport for Unigene cluster: Hs.508937
        SABiosciences Custom PCR Arrays for ZFHX2
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZFHX2 gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfhx21 , 5 zinc finger homeobox 21, 5 85.94(n)1
    85.24(a)1
      14 (28.05 cM)5
    2391021  NM_001039198.11  NP_001034287.11 
     550602625 
    lizard
    (Anolis carolinensis)
    Reptilia ZFHX26
    Uncharacterized protein
    53(a)
    1 ↔ 1
    GL343680.1(15685-29581)
    zebrafish
    (Danio rerio)
    Actinopterygii ZFHX26
    zinc finger homeobox 2
    12(a)
    1 ↔ 1
    24(14482670-14496307)
    fruit fly
    (Drosophila melanogaster)
    Insecta zfh26
    Zn finger homeodomain 2
    13(a)
    1 → many
    4(522436-560418)
    worm
    (Caenorhabditis elegans)
    Secernentea zfh-26
    Protein ZFH-2
    21(a)
    1 → many
    I(803368-834808)


    ENSEMBL Gene Tree for ZFHX2 (if available)
    TreeFam Gene Tree for ZFHX2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZFHX2 gene
    ZFHX42  ZFHX32  
    2 SIMAP similar genes for ZFHX2 using alignment to 6 protein entries:     ZFHX2_HUMAN (see all proteins):
    POU6F1    NKX2-5

    ZFHX2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZFHX2:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv524778CNV Loss19592680

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZFHX2 for disorders           About MalaCards

    ZFHX2 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZFHX2

    Export disorders for ZFHX2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZFHX2 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZFHX2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970)1, 2, 3 Nagase T.... Ohara O. (2000)
    2. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 3 Kikuno R....Ohara O. (1999)
    3. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    4. Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc finger proteins, and nuclear pore complex proteins: a proteomic analysis. (PubMed id 15161980)1 Li T....Chock P.B. (2004)
    5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (2003)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PubMed id 10737800)1 Dias Neto E....Simpson A.J.G. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 85446 HGNC: 20152 AceView: ZFHX2 Ensembl:ENSG00000136367 euGenes: HUgn85446
    ECgene: ZFHX2 H-InvDB: ZFHX2

    (According to HUGE)
    About This Section
    HUGE: KIAA1056 KIAA1762

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZFHX2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZFHX2 gene:
    Search GeneIP for patents involving ZFHX2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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