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Aliases for ZFAT-AS1 Gene

Subcategory (RNA class) for ZFAT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFAT-AS1 Gene

  • ZFAT Antisense RNA 1 2 3
  • ZFAT Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZFAT Antisense RNA (Non-Protein Coding) 2 3
  • Zinc Finger Protein 406 Antisense Transcript 3
  • Non-Protein Coding RNA 70 2
  • NCRNA00070 3
  • SAS-ZFAT 3
  • ZFAT-AS 3
  • ZFATAS 3

External Ids for ZFAT-AS1 Gene

Previous HGNC Symbols for ZFAT-AS1 Gene

  • ZFATAS
  • ZFAT-AS

Previous GeneCards Identifiers for ZFAT-AS1 Gene

  • GC08P135610
  • GC08P134601

Summaries for ZFAT-AS1 Gene

Entrez Gene Summary for ZFAT-AS1 Gene

  • This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

GeneCards Summary for ZFAT-AS1 Gene

ZFAT-AS1 (ZFAT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAT-AS1 Gene

Genomics for ZFAT-AS1 Gene

Genomic Location for ZFAT-AS1 Gene

Chromosome:
8
Start:
134,598,071 bp from pter
End:
134,600,689 bp from pter
Size:
2,619 bases
Orientation:
Plus strand

Genomic View for ZFAT-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZFAT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAT-AS1 Gene

No data available for Regulatory Elements for ZFAT-AS1 Gene

Proteins for ZFAT-AS1 Gene

Post-translational modifications for ZFAT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAT-AS1 Gene

Domains & Families for ZFAT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAT-AS1 Gene

Function for ZFAT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFAT-AS1 Gene

Localization for ZFAT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFAT-AS1 Gene

Pathways & Interactions for ZFAT-AS1 Gene

SuperPathways for ZFAT-AS1 Gene

No Data Available

Interacting Proteins for ZFAT-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFAT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFAT-AS1 Gene

Drugs & Compounds for ZFAT-AS1 Gene

No Compound Related Data Available

Transcripts for ZFAT-AS1 Gene

mRNA/cDNA for ZFAT-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFAT-AS1 Gene

ZFAT antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAT-AS1 Gene

No ASD Table

Relevant External Links for ZFAT-AS1 Gene

GeneLoc Exon Structure for
ZFAT-AS1
ECgene alternative splicing isoforms for
ZFAT-AS1

Expression for ZFAT-AS1 Gene

mRNA expression in normal human tissues for ZFAT-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZFAT-AS1 Gene Hs.626298

genes like me logo Genes that share expression patterns with ZFAT-AS1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ZFAT-AS1 Gene

Orthologs for ZFAT-AS1 Gene

Evolution for ZFAT-AS1 Gene

ENSEMBL:
Gene Tree for ZFAT-AS1 (if available)
TreeFam:
Gene Tree for ZFAT-AS1 (if available)

No data available for Orthologs for ZFAT-AS1 Gene

Paralogs for ZFAT-AS1 Gene

No data available for Paralogs for ZFAT-AS1 Gene

Variants for ZFAT-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZFAT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2660261 CNV Deletion 23128226

Relevant External Links for ZFAT-AS1 Gene

HapMap Linkage Disequilibrium report
ZFAT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for ZFAT-AS1 Gene

Disorders for ZFAT-AS1 Gene

Relevant External Links for ZFAT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFAT-AS1
genes like me logo Genes that share disorders with ZFAT-AS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFAT-AS1 Gene

Publications for ZFAT-AS1 Gene

  1. A genome-wide approach reveals novel imprinted genes expressed in the human placenta. (PMID: 22894909) Barbaux S. … Vaiman D. (Epigenetics 2012) 2 67
  2. SNPs in the promoter of a B cell-specific antisense transcript, SAS- ZFAT, determine susceptibility to autoimmune thyroid disease. (PMID: 15294872) Shirasawa S. … Sasazuki T. (Hum. Mol. Genet. 2004) 2 67

Products for ZFAT-AS1 Gene

Sources for ZFAT-AS1 Gene

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