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Aliases for ZFAT-AS1 Gene

Subcategory (RNA class) for ZFAT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFAT-AS1 Gene

  • ZFAT Antisense RNA 1 2 3 5
  • ZFAT Antisense RNA 1 (Non-Protein Coding) 2 3
  • Zinc Finger Protein 406 Antisense Transcript 3
  • ZFAT Antisense RNA (Non-Protein Coding) 2
  • Non-Protein Coding RNA 70 2
  • NCRNA00070 3
  • SAS-ZFAT 3
  • ZFAT-AS 3
  • ZFATAS 3

External Ids for ZFAT-AS1 Gene

Previous HGNC Symbols for ZFAT-AS1 Gene

  • ZFATAS
  • ZFAT-AS

Previous GeneCards Identifiers for ZFAT-AS1 Gene

  • GC08P135610
  • GC08P134601
  • GC08P134603
  • GC08P134604
  • GC08P134605
  • GC08P134608
  • GC08P134609

Summaries for ZFAT-AS1 Gene

Entrez Gene Summary for ZFAT-AS1 Gene

  • This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

GeneCards Summary for ZFAT-AS1 Gene

ZFAT-AS1 (ZFAT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZFAT-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAT-AS1 Gene

Genomics for ZFAT-AS1 Gene

Regulatory Elements for ZFAT-AS1 Gene

Enhancers for ZFAT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H134580 0.6 ENCODE 0.4 -16.5 -16464 1.8 JUN REST FOXA1 JUND FOXP2 NFE2 FOS HNF4A SPI1 ZFAT ZFAT-AS1 ENSG00000276140 GC08M134553
GH08H134572 0.8 ENCODE 0.3 -24.8 -24750 1.8 TAF1 MAX EBF1 BATF RAD21 YY1 ZNF316 HNF4G NFE2 ETV6 ZFAT GC08M134553 ZFAT-AS1 ENSG00000276140
GH08H134564 0.6 ENCODE 0.3 -33.0 -32986 1.1 ZNF687 POLR2A EED ZBED1 SCRT2 EBF1 MYC CREM ZFAT GC08M134553 ZFAT-AS1 ENSG00000276140
GH08H134593 0.2 ENCODE 0.7 -4.2 -4179 0.2 ZFAT-AS1 ENSG00000276140 GC08M134553
GH08H134558 0.3 FANTOM5 0.3 -39.3 -39265 0.4 GC08M134553 ZFAT-AS1 ENSG00000276140
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZFAT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZFAT-AS1 Gene

Genomic Locations for ZFAT-AS1 Gene
chr8:134,598,071-134,600,689
(GRCh38/hg38)
Size:
2,619 bases
Orientation:
Plus strand
chr8:135,610,314-135,612,932
(GRCh37/hg19)

Genomic View for ZFAT-AS1 Gene

Genes around ZFAT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFAT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFAT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAT-AS1 Gene

Proteins for ZFAT-AS1 Gene

Post-translational modifications for ZFAT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAT-AS1 Gene

Domains & Families for ZFAT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAT-AS1 Gene

Function for ZFAT-AS1 Gene

Phenotypes From GWAS Catalog for ZFAT-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFAT-AS1 Gene

Localization for ZFAT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZFAT-AS1 Gene

Pathways & Interactions for ZFAT-AS1 Gene

SuperPathways for ZFAT-AS1 Gene

No Data Available

Interacting Proteins for ZFAT-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFAT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFAT-AS1 Gene

Drugs & Compounds for ZFAT-AS1 Gene

No Compound Related Data Available

Transcripts for ZFAT-AS1 Gene

mRNA/cDNA for ZFAT-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFAT-AS1 Gene

ZFAT antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAT-AS1 Gene

No ASD Table

Relevant External Links for ZFAT-AS1 Gene

GeneLoc Exon Structure for
ZFAT-AS1
ECgene alternative splicing isoforms for
ZFAT-AS1

Expression for ZFAT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZFAT-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZFAT-AS1 Gene:

Hs.626298
genes like me logo Genes that share expression patterns with ZFAT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFAT-AS1 Gene

Orthologs for ZFAT-AS1 Gene

Evolution for ZFAT-AS1 Gene

ENSEMBL:
Gene Tree for ZFAT-AS1 (if available)
TreeFam:
Gene Tree for ZFAT-AS1 (if available)

No data available for Orthologs for ZFAT-AS1 Gene

Paralogs for ZFAT-AS1 Gene

No data available for Paralogs for ZFAT-AS1 Gene

Variants for ZFAT-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZFAT-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000049334 -- 134,599,444(+) AAATA(C/T)GTATC intron-variant
rs1000547650 -- 134,599,798(+) TCTTG(-/AGTT)AGATT intron-variant, nc-transcript-variant
rs1001009806 -- 134,600,955(+) CATGC(A/T)TAAAT intron-variant, downstream-variant-500B
rs1001084678 -- 134,598,910(+) AAACA(C/T)GTGGT intron-variant
rs1003061079 -- 134,600,766(+) ATCTC(C/T)CTCTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ZFAT-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv612335 CNV loss 21841781
esv2660261 CNV deletion 23128226

Relevant External Links for ZFAT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFAT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFAT-AS1 Gene

Disorders for ZFAT-AS1 Gene

Relevant External Links for ZFAT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFAT-AS1

No disorders were found for ZFAT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFAT-AS1 Gene

Publications for ZFAT-AS1 Gene

  1. A genome-wide approach reveals novel imprinted genes expressed in the human placenta. (PMID: 22894909) Barbaux S … Vaiman D (Epigenetics 2012) 2 3 60
  2. SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease. (PMID: 15294872) Shirasawa S … Sasazuki T (Human molecular genetics 2004) 2 3 60

Products for ZFAT-AS1 Gene

Sources for ZFAT-AS1 Gene

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