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Aliases for ZFAT-AS1 Gene

Subcategory (RNA class) for ZFAT-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for ZFAT-AS1 Gene

  • ZFAT Antisense RNA 1 2 3
  • ZFAT Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZFAT Antisense RNA (Non-Protein Coding) 2 3
  • Zinc Finger Protein 406 Antisense Transcript 3
  • Non-Protein Coding RNA 70 2
  • NCRNA00070 3
  • SAS-ZFAT 3
  • ZFAT-AS 3
  • ZFATAS 3

External Ids for ZFAT-AS1 Gene

ORGUL Members for ZFAT-AS1 Gene

Previous HGNC Symbols for ZFAT-AS1 Gene

  • ZFATAS
  • ZFAT-AS

Previous GeneCards Identifiers for ZFAT-AS1 Gene

  • GC08P135610

Summaries for ZFAT-AS1 Gene

Entrez Gene Summary for ZFAT-AS1 Gene

  • This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

GeneCards Summary for ZFAT-AS1 Gene

ZFAT-AS1 (ZFAT Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAT-AS1 Gene

Genomics for ZFAT-AS1 Gene

Genomic Location for ZFAT-AS1 Gene

Start:
134,598,071 bp from pter
End:
134,600,689 bp from pter
Size:
2,619 bases
Orientation:
Plus strand

Genomic View for ZFAT-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZFAT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAT-AS1 Gene

No data available for Regulatory Elements for ZFAT-AS1 Gene

Proteins for ZFAT-AS1 Gene

Post-translational modifications for ZFAT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAT-AS1 Gene

Domains for ZFAT-AS1 Gene

Gene Families for ZFAT-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZFAT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAT-AS1 Gene

Function for ZFAT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZFAT-AS1 Gene

Localization for ZFAT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFAT-AS1 Gene

Pathways for ZFAT-AS1 Gene

SuperPathways for ZFAT-AS1 Gene

No Data Available

Interacting Proteins for ZFAT-AS1 Gene

Gene Ontology (GO) - Biological Process for ZFAT-AS1 Gene

None

No data available for Pathways by source for ZFAT-AS1 Gene

Transcripts for ZFAT-AS1 Gene

mRNA/cDNA for ZFAT-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZFAT-AS1 Gene

ZFAT antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAT-AS1 Gene

No ASD Table

Relevant External Links for ZFAT-AS1 Gene

GeneLoc Exon Structure for
ZFAT-AS1
ECgene alternative splicing isoforms for
ZFAT-AS1

Expression for ZFAT-AS1 Gene

mRNA expression in normal human tissues for ZFAT-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZFAT-AS1 Gene Hs.626298

genes like me logo Genes that share expressions with ZFAT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZFAT-AS1 Gene

Orthologs for ZFAT-AS1 Gene

Evolution for ZFAT-AS1 Gene

ENSEMBL:
Gene Tree for ZFAT-AS1 (if available)
TreeFam:
Gene Tree for ZFAT-AS1 (if available)

No data available for Orthologs for ZFAT-AS1 Gene

Paralogs for ZFAT-AS1 Gene

No data available for Paralogs for ZFAT-AS1 Gene

Variants for ZFAT-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ZFAT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2660261 CNV Deletion 23128226

Relevant External Links for ZFAT-AS1 Gene

HapMap Linkage Disequilibrium report
ZFAT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for ZFAT-AS1 Gene

Disorders for ZFAT-AS1 Gene

No disorders were found for ZFAT-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for ZFAT-AS1 Gene

Publications for ZFAT-AS1 Gene

  1. SNPs in the promoter of a B cell-specific antisense transcript, SAS- ZFAT, determine susceptibility to autoimmune thyroid disease. (PMID: 15294872) Shirasawa S. … Sasazuki T. (Hum. Mol. Genet. 2004) 2 3
  2. A genome-wide approach reveals novel imprinted genes expressed in the human placenta. (PMID: 22894909) Barbaux S. … Vaiman D. (Epigenetics 2012) 2 3

Products for ZFAT-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZFAT-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZFAT-AS1
    • Block miRNA regulation of ZFAT-AS1 using miScript Target Protectors

    Sources for ZFAT-AS1 Gene

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