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Aliases for ZFAS1 Gene

Subcategory (RNA class) for ZFAS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFAS1 Gene

  • ZNFX1 Antisense RNA 1 2 3 5
  • ZNFX1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Putative Uncharacterized Protein ZNFX1-AS1 3
  • Chromosome 20 Open Reading Frame 199 2
  • ZNFX1 Antisense Gene Protein 1 3
  • Non-Protein Coding RNA 275 2
  • NCRNA00275 3
  • C20orf199 3
  • ZNFX1-AS1 3
  • HSUP1 3
  • HSUP2 3

External Ids for ZFAS1 Gene

Previous HGNC Symbols for ZFAS1 Gene

  • C20orf199
  • NCRNA00275
  • ZNFX1-AS1

Previous GeneCards Identifiers for ZFAS1 Gene

  • GC20P047905
  • GC20P047910
  • GC20P047917
  • GC20P049281
  • GC20P049288
  • GC20P049292
  • GC20P049296

Summaries for ZFAS1 Gene

GeneCards Summary for ZFAS1 Gene

ZFAS1 (ZNFX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAS1 Gene

Genomics for ZFAS1 Gene

Regulatory Elements for ZFAS1 Gene

Enhancers for ZFAS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F049275 1.6 FANTOM5 ENCODE 20.7 +1.8 1777 9.2 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 CSE1L ZNFX1 ZFAS1 SNORD12B B4GALT5 PTGIS SLC9A8 SNORD12 ARFGEF2 ENSG00000274760
GH20F050186 1.6 FANTOM5 ENCODE 10.2 +913.2 913198 10.1 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC DPM1 ENSG00000232043 SNORD12B PSMD10P1 LINC01273 ENSG00000199490 RPSAP1 SLC9A8 MOCS3 PTPN1
GH20F049184 1.8 FANTOM5 Ensembl ENCODE 8.1 -91.7 -91716 4.9 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1 ARFGEF2 PTGIS DDX27 CSE1L SNORD12B ZFAS1 PREX1 STAU1 PIR47119
GH20F049981 1.4 FANTOM5 ENCODE 10.2 +705.4 705353 3.3 HDGF ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 SLC9A8 SNAI1 DPM1 SNORD12B LINC01273 ZFAS1 ENSG00000232043 SNORD12 CEBPB B4GALT5
GH20F049218 1.1 ENCODE 11.9 -58.4 -58439 2.5 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZFAS1 STAU1 CSE1L DDX27 PIR41098
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZFAS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZFAS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001449464 222 4401 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143

Genomic Location for ZFAS1 Gene

Chromosome:
20
Start:
49,278,178 bp from pter
End:
49,295,738 bp from pter
Size:
17,561 bases
Orientation:
Plus strand

Genomic View for ZFAS1 Gene

Genes around ZFAS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFAS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFAS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAS1 Gene

Proteins for ZFAS1 Gene

Post-translational modifications for ZFAS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAS1 Gene

Domains & Families for ZFAS1 Gene

Gene Families for ZFAS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZFAS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAS1 Gene

Function for ZFAS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFAS1 Gene

Localization for ZFAS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFAS1 Gene

Pathways & Interactions for ZFAS1 Gene

SuperPathways for ZFAS1 Gene

No Data Available

Interacting Proteins for ZFAS1 Gene

Gene Ontology (GO) - Biological Process for ZFAS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFAS1 Gene

Transcripts for ZFAS1 Gene

Unigene Clusters for ZFAS1 Gene

ZNFX1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAS1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1: - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - -
SP5: - - -
SP6: - - - - - -
SP7: - - - - -
SP8: -
SP9:

Relevant External Links for ZFAS1 Gene

GeneLoc Exon Structure for
ZFAS1
ECgene alternative splicing isoforms for
ZFAS1

Expression for ZFAS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZFAS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZFAS1 Gene:

ZFAS1

SOURCE GeneReport for Unigene cluster for ZFAS1 Gene:

Hs.356766
genes like me logo Genes that share expression patterns with ZFAS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZFAS1 Gene

Orthologs for ZFAS1 Gene

Evolution for ZFAS1 Gene

ENSEMBL:
Gene Tree for ZFAS1 (if available)
TreeFam:
Gene Tree for ZFAS1 (if available)

No data available for Orthologs for ZFAS1 Gene

Paralogs for ZFAS1 Gene

No data available for Paralogs for ZFAS1 Gene

Variants for ZFAS1 Gene

Sequence variations from dbSNP and Humsavar for ZFAS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111518602 -- 49,278,719(+) CCCGT(A/G/T)AGTTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111626873 -- 49,286,840(+) TTTGT(C/T)GCCCC intron-variant
rs111808824 -- 49,278,266(+) CCCCC(G/T)GCGGC nc-transcript-variant, upstream-variant-2KB
rs111969929 -- 49,284,271(+) AAATC(-/TG)TTACT intron-variant
rs112020592 -- 49,286,982(+) CCACC(A/G)CAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZFAS1 Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv1072545 CNV deletion 25765185
nsv437839 CNV loss 16327808

Relevant External Links for ZFAS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFAS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFAS1 Gene

Disorders for ZFAS1 Gene

Relevant External Links for ZFAS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFAS1

No disorders were found for ZFAS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFAS1 Gene

Publications for ZFAS1 Gene

  1. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. (PMID: 21460236) Askarian-Amiri M.E. … Mattick J.S. (RNA 2011) 2 3 64
  2. Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer. (PMID: 26506418) Thorenoor N. … Slaby O. (Oncotarget 2016) 3 64
  3. Amplification of Long Noncoding RNA ZFAS1 Promotes Metastasis in Hepatocellular Carcinoma. (PMID: 26069248) Li T. … Zhu Z. (Cancer Res. 2015) 3 64
  4. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 64
  5. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3 64

Products for ZFAS1 Gene

Sources for ZFAS1 Gene

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