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Aliases for ZFAS1 Gene

Subcategory (RNA class) for ZFAS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for ZFAS1 Gene

  • ZNFX1 Antisense RNA 1 2 3
  • ZNFX1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Putative Uncharacterized Protein ZNFX1-AS1 3
  • Chromosome 20 Open Reading Frame 199 2
  • ZNFX1 Antisense Gene Protein 1 3
  • Non-Protein Coding RNA 275 2
  • NCRNA00275 3
  • C20orf199 3
  • ZNFX1-AS1 3
  • HSUP1 3
  • HSUP2 3

External Ids for ZFAS1 Gene

Previous Symbols for ZFAS1 Gene

  • C20orf199
  • NCRNA00275
  • ZNFX1-AS1

Summaries for ZFAS1 Gene

GeneCards Summary for ZFAS1 Gene

ZFAS1 (ZNFX1 Antisense RNA 1) is an RNA Gene, and belongs to the antisense RNA class.

fRNAdb sequence ontologies for ZFAS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ZFAS1 Gene

Genomics for ZFAS1 Gene

Genomic Location for ZFAS1 Gene

Start:
49,278,178 bp from pter
End:
49,295,738 bp from pter
Size:
17,561 bases
Orientation:
Plus strand

Genomic View for ZFAS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZFAS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAS1 Gene

No data available for Regulatory Elements for ZFAS1 Gene

Proteins for ZFAS1 Gene

Post-translational modifications for ZFAS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAS1 Gene

Domains for ZFAS1 Gene

Gene Families for ZFAS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZFAS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAS1 Gene

Function for ZFAS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZFAS1 Gene

Localization for ZFAS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFAS1 Gene

Pathways for ZFAS1 Gene

SuperPathways for ZFAS1 Gene

No Data Available

Interacting Proteins for ZFAS1 Gene

Gene Ontology (GO) - Biological Process for ZFAS1 Gene

None

No data available for Pathways by source for ZFAS1 Gene

Transcripts for ZFAS1 Gene

Unigene Clusters for ZFAS1 Gene

ZNFX1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAS1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1: - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - -
SP5: - - -
SP6: - - - - - -
SP7: - - - - -
SP8: -
SP9:

Relevant External Links for ZFAS1 Gene

GeneLoc Exon Structure for
ZFAS1
ECgene alternative splicing isoforms for
ZFAS1

Expression for ZFAS1 Gene

mRNA expression in normal human tissues for ZFAS1 Gene

SOURCE GeneReport for Unigene cluster for ZFAS1 Gene Hs.356766

genes like me logo Genes that share expressions with ZFAS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZFAS1 Gene

Orthologs for ZFAS1 Gene

Evolution for ZFAS1 Gene

ENSEMBL:
Gene Tree for ZFAS1 (if available)
TreeFam:
Gene Tree for ZFAS1 (if available)

No data available for Orthologs for ZFAS1 Gene

Paralogs for ZFAS1 Gene

No data available for Paralogs for ZFAS1 Gene

Variants for ZFAS1 Gene

Sequence variations from dbSNP and Humsavar for ZFAS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs8197 -- 49,288,971(-) AAATA(C/T)ATGTG intron-variant
rs237737 -- 49,288,471(-) CATGA(C/T)TGCAC intron-variant
rs237738 -- 49,288,383(-) CAAGA(A/G)ATAAC intron-variant
rs237739 -- 49,287,606(-) AATAT(A/G)ATTTG intron-variant
rs237740 -- 49,287,247(-) gatag(A/G)acaca intron-variant

Relevant External Links for ZFAS1 Gene

HapMap Linkage Disequilibrium report
ZFAS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZFAS1 Gene

Disorders for ZFAS1 Gene

No disorders were found for ZFAS1 Gene.

No data available for UniProtKB/Swiss-Prot for ZFAS1 Gene

Publications for ZFAS1 Gene

  1. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. (PMID: 21460236) Askarian-Amiri M.E. … Mattick J.S. (RNA 2011) 2 3
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3

Products for ZFAS1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZFAS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZFAS1
    • Block miRNA regulation of ZFAS1 using miScript Target Protectors

    Sources for ZFAS1 Gene

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