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Aliases for ZFAS1 Gene

Subcategory (RNA class) for ZFAS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZFAS1 Gene

  • ZNFX1 Antisense RNA 1 2 3 5
  • ZNFX1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 20 Open Reading Frame 199 2
  • ZNFX1 Antisense Gene Protein 1 3
  • Non-Protein Coding RNA 275 2
  • NCRNA00275 3
  • C20orf199 3
  • ZNFX1-AS1 3
  • HSUP1 3
  • HSUP2 3

External Ids for ZFAS1 Gene

Previous HGNC Symbols for ZFAS1 Gene

  • C20orf199
  • NCRNA00275
  • ZNFX1-AS1

Previous GeneCards Identifiers for ZFAS1 Gene

  • GC20P047905
  • GC20P047910
  • GC20P047917
  • GC20P049281
  • GC20P049288
  • GC20P049292
  • GC20P049296
  • GC20P049300

Summaries for ZFAS1 Gene

GeneCards Summary for ZFAS1 Gene

ZFAS1 (ZNFX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZFAS1 Gene

Genomics for ZFAS1 Gene

Regulatory Elements for ZFAS1 Gene

Enhancers for ZFAS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G049275 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20.7 +1.8 1777 9.2 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 CSE1L ZNFX1 ZFAS1 SNORD12B B4GALT5 SNORD12 ARFGEF2 GC20P049304 ENSG00000274760
GH20G050186 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +913.1 913101 10.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SNORD12B DPM1 ENSG00000232043 LINC01273 CEBPB ZFAS1 SNORD12 PSMD10P1 MOCS3 SLC9A8
GH20G049981 1.4 FANTOM5 ENCODE 10.2 +705.4 705353 3.3 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 SNAI1 SLC9A8 SNORD12B LINC01273 ZFAS1 ENSG00000232043 SNORD12 CEBPB B4GALT5 TMEM189
GH20G049218 1.1 ENCODE 11.9 -58.4 -58439 2.5 HDGF PKNOX1 FOXA2 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZFAS1 STAU1 CSE1L DDX27 PIR41098
GH20G049184 1.5 FANTOM5 ENCODE 8.2 -91.6 -91593 4.7 HNRNPUL1 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT ZFP64 WRNIP1 ARID4B ARFGEF2 DDX27 CSE1L SNORD12B ZFAS1 STAU1 PREX1 PIR47119
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZFAS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZFAS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000138214 22 3601 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143

Genomic Location for ZFAS1 Gene

Chromosome:
20
Start:
49,278,178 bp from pter
End:
49,295,738 bp from pter
Size:
17,561 bases
Orientation:
Plus strand

Genomic View for ZFAS1 Gene

Genes around ZFAS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZFAS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZFAS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZFAS1 Gene

Proteins for ZFAS1 Gene

Post-translational modifications for ZFAS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZFAS1 Gene

Domains & Families for ZFAS1 Gene

Gene Families for ZFAS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZFAS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZFAS1 Gene

Function for ZFAS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZFAS1 Gene

Localization for ZFAS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZFAS1 Gene

Pathways & Interactions for ZFAS1 Gene

SuperPathways for ZFAS1 Gene

No Data Available

Interacting Proteins for ZFAS1 Gene

Gene Ontology (GO) - Biological Process for ZFAS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZFAS1 Gene

Drugs & Compounds for ZFAS1 Gene

No Compound Related Data Available

Transcripts for ZFAS1 Gene

Unigene Clusters for ZFAS1 Gene

ZNFX1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZFAS1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8
SP1: - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - -
SP5: - - -
SP6: - - - - - -
SP7: - - - - -
SP8: -
SP9:

Relevant External Links for ZFAS1 Gene

GeneLoc Exon Structure for
ZFAS1
ECgene alternative splicing isoforms for
ZFAS1

Expression for ZFAS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZFAS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ZFAS1 Gene:

ZFAS1

SOURCE GeneReport for Unigene cluster for ZFAS1 Gene:

Hs.356766
genes like me logo Genes that share expression patterns with ZFAS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZFAS1 Gene

Orthologs for ZFAS1 Gene

Evolution for ZFAS1 Gene

ENSEMBL:
Gene Tree for ZFAS1 (if available)
TreeFam:
Gene Tree for ZFAS1 (if available)

No data available for Orthologs for ZFAS1 Gene

Paralogs for ZFAS1 Gene

No data available for Paralogs for ZFAS1 Gene

Variants for ZFAS1 Gene

Sequence variations from dbSNP and Humsavar for ZFAS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000009454 -- 49,281,636(+) TCTTG(A/G)TTTTG intron-variant
rs1000042643 -- 49,277,336(+) TGTGA(C/G)GTGGC intron-variant, upstream-variant-2KB
rs1000070514 -- 49,279,695(+) AGGTT(C/T)CTGGT intron-variant, upstream-variant-2KB
rs1000091221 -- 49,288,178(+) AGTCA(C/G)TGATG intron-variant
rs1000182081 -- 49,283,955(+) GTAAG(A/G)GTGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZFAS1 Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv1072545 CNV deletion 25765185
nsv437839 CNV loss 16327808

Relevant External Links for ZFAS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZFAS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZFAS1 Gene

Disorders for ZFAS1 Gene

Relevant External Links for ZFAS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZFAS1

No disorders were found for ZFAS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZFAS1 Gene

Publications for ZFAS1 Gene

  1. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. (PMID: 21460236) Askarian-Amiri M.E. … Mattick J.S. (RNA 2011) 2 3 64
  2. Long non-coding RNA ZFAS1 is an unfavourable prognostic factor and promotes glioma cell progression by activation of the Notch signaling pathway. (PMID: 28081466) Gao K. … Shao L. (Biomed. Pharmacother. 2017) 3 64
  3. Upregulation of long noncoding RNA zinc finger antisense 1 enhances epithelial-mesenchymal transition in vitro and predicts poor prognosis in glioma. (PMID: 28349823) Lv Q.L. … Zhou H.H. (Tumour Biol. 2017) 3 64
  4. Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer. (PMID: 26506418) Thorenoor N. … Slaby O. (Oncotarget 2016) 3 64
  5. Upregulation of long noncoding RNA ZFAS1 predicts poor prognosis and prompts invasion and metastasis in colorectal cancer. (PMID: 27461828) Wang W. … Xing C. (Pathol. Res. Pract. 2016) 3 64

Products for ZFAS1 Gene

Sources for ZFAS1 Gene

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