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Aliases for ZEB2-AS1 Gene

Subcategory (RNA class) for ZEB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZEB2-AS1 Gene

  • ZEB2 Antisense RNA 1 2 3 5
  • ZEB2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZEB2 Natural Antisense Transcript 2 3
  • ZEB2 Antisense RNA (Non-Protein Coding) 2
  • ZEB2NAT 3
  • ZEB2-AS 3
  • ZEB2AS 3

External Ids for ZEB2-AS1 Gene

Previous HGNC Symbols for ZEB2-AS1 Gene

  • ZEB2AS
  • ZEB2-AS

Previous GeneCards Identifiers for ZEB2-AS1 Gene

  • GC02U902264
  • GC02P145277

Summaries for ZEB2-AS1 Gene

Entrez Gene Summary for ZEB2-AS1 Gene

  • This gene produces a spliced long non-coding RNA which is a natural antisense transcript corresponding to the 5' UTR of zinc finger E-box binding homeobox 2 (ZEB2). It is thought that this transcript may be involved in the regulation of ZEB2 expression, and may play a role in the progression of bladder cancer. [provided by RefSeq, Aug 2015]

GeneCards Summary for ZEB2-AS1 Gene

ZEB2-AS1 (ZEB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Gene Wiki entry for ZEB2-AS1 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZEB2-AS1 Gene

Genomics for ZEB2-AS1 Gene

Regulatory Elements for ZEB2-AS1 Gene

Enhancers for ZEB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F144495 0.7 Ensembl ENCODE 12.6 -22.2 -22196 1.0 ZNF263 ZEB2-AS1 ZEB2 ENSG00000279166 GC02P144494
GH02F144492 1 ENCODE 12.6 -25.0 -25044 1.3 ZKSCAN1 ZEB2-AS1 ZEB2 GC02P144494 ENSG00000283118
GH02F144473 2.4 Ensembl ENCODE 11.6 -42.2 -42152 5.3 PKNOX1 TAL1 TEAD4 CEBPB FEZF1 ARID1B SMARCA4 POLR2A MYNN ZNF652 ZEB2 ZEB2-AS1 GC02P144494 ENSG00000283118
GH02F144579 2.5 VISTA Ensembl ENCODE 11.4 +64.1 64053 4.9 HDGF PKNOX1 ATF1 ARNT CREB3L1 YBX1 ELK1 GATA2 FOS NCOA1 ZEB2 ZEB2-AS1 GC02P144567 TEX41
GH02F144451 2.7 FANTOM5 Ensembl ENCODE 11.3 -60.5 -60544 12.0 ATF1 PKNOX1 FEZF1 ZNF2 ZNF121 GATA2 FOS ZNF548 ZNF263 JUNB ZEB2 ZEB2-AS1 ENSG00000231758 GTDC1 ENSG00000283118 GC02P144494
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZEB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZEB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000599623 -697 9201 PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 YY1 CBX5 FOS SP3

Genomic Location for ZEB2-AS1 Gene

Chromosome:
2
Start:
144,518,097 bp from pter
End:
144,521,477 bp from pter
Size:
3,381 bases
Orientation:
Plus strand

Genomic View for ZEB2-AS1 Gene

Genes around ZEB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZEB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZEB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZEB2-AS1 Gene

Proteins for ZEB2-AS1 Gene

Post-translational modifications for ZEB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZEB2-AS1 Gene

Domains & Families for ZEB2-AS1 Gene

Gene Families for ZEB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZEB2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZEB2-AS1 Gene

Function for ZEB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZEB2-AS1 Gene

Localization for ZEB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZEB2-AS1 Gene

Pathways & Interactions for ZEB2-AS1 Gene

SuperPathways for ZEB2-AS1 Gene

No Data Available

Interacting Proteins for ZEB2-AS1 Gene

Gene Ontology (GO) - Biological Process for ZEB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZEB2-AS1 Gene

Transcripts for ZEB2-AS1 Gene

mRNA/cDNA for ZEB2-AS1 Gene

(1) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZEB2-AS1 Gene

ZEB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZEB2-AS1 Gene

No ASD Table

Relevant External Links for ZEB2-AS1 Gene

GeneLoc Exon Structure for
ZEB2-AS1
ECgene alternative splicing isoforms for
ZEB2-AS1

Expression for ZEB2-AS1 Gene

mRNA expression in normal human tissues for ZEB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZEB2-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x6.4).

SOURCE GeneReport for Unigene cluster for ZEB2-AS1 Gene:

Hs.560789
genes like me logo Genes that share expression patterns with ZEB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZEB2-AS1 Gene

Orthologs for ZEB2-AS1 Gene

Evolution for ZEB2-AS1 Gene

ENSEMBL:
Gene Tree for ZEB2-AS1 (if available)
TreeFam:
Gene Tree for ZEB2-AS1 (if available)

No data available for Orthologs for ZEB2-AS1 Gene

Paralogs for ZEB2-AS1 Gene

No data available for Paralogs for ZEB2-AS1 Gene

Variants for ZEB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZEB2-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs112253692 -- 144,520,767(+) GCCAG(-/A)AAAAA nc-transcript-variant, upstream-variant-2KB
rs113809972 -- 144,518,425(+) GCCTC(C/G)AGGAT intron-variant, upstream-variant-2KB
rs116593972 -- 144,519,489(+) CTGAC(A/C)AAGTT intron-variant, upstream-variant-2KB
rs13396494 -- 144,520,458(+) ccttc(A/T)ccccc intron-variant, upstream-variant-2KB
rs139846712 -- 144,517,790(+) TTGGG(A/G)TGAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZEB2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3592768 CNV loss 21293372

Relevant External Links for ZEB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZEB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZEB2-AS1 Gene

Disorders for ZEB2-AS1 Gene

Relevant External Links for ZEB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZEB2-AS1

No disorders were found for ZEB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZEB2-AS1 Gene

Publications for ZEB2-AS1 Gene

  1. TGFI^1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT. (PMID: 26152796) Zhuang J. … Guo H. (Sci Rep 2015) 2 3 64
  2. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. (PMID: 18347095) Beltran M. … de Herreros A.G. (Genes Dev. 2008) 2 3 64

Products for ZEB2-AS1 Gene

Sources for ZEB2-AS1 Gene

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