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Aliases for ZEB1-AS1 Gene

Subcategory (RNA class) for ZEB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZEB1-AS1 Gene

  • ZEB1 Antisense RNA 1 2 3 5
  • ZEB1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZEB1-AS1 Gene

Previous GeneCards Identifiers for ZEB1-AS1 Gene

  • GC10M031606
  • GC10M031495

Summaries for ZEB1-AS1 Gene

GeneCards Summary for ZEB1-AS1 Gene

ZEB1-AS1 (ZEB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZEB1-AS1 Gene

Genomics for ZEB1-AS1 Gene

Regulatory Elements for ZEB1-AS1 Gene

Enhancers for ZEB1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F031316 0.2 ENCODE 20.9 +0.5 471 6.0 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MTPAP ZEB1-AS1 ENSG00000226842 ZEB1
GH10F031918 0.9 Ensembl 19.1 -598.9 -598854 1.4 ARNT ZNF493 ZFP64 ARID4B ZSCAN9 RAD21 ZNF354C ZNF138 SCRT2 ZNF143 ENSG00000226842 ZEB1-AS1 KIF5B RPS4XP11 SPTLC1P1 DDX10P1 CCDC7 ARHGAP12 HMGB1P7
GH10F030500 1.3 FANTOM5 Ensembl ENCODE 19.1 +816.8 816847 6.8 ATF1 ZFP64 ZNF121 ZNF202 JUNB REST TBX21 ZNF623 ZNF518A ZNF264 MTPAP MAP3K8 ZEB1-AS1 ZNF438 SPTLC1P1 DDX10P1 HNRNPA1P32 GC10P030465
GH10F030984 1 Ensembl ENCODE 18.5 +334.7 334741 3.3 ZFP64 JUN ZNF140 MAX ZNF514 ZNF101 ZNF433 ZBTB11 CEBPB ZBTB8A ZEB1-AS1 ZNF438 MTPAP DDX10P1 ENSG00000272381 GC10M030988 GC10M030926
GH10F030699 1.3 FANTOM5 Ensembl ENCODE 18.4 +617.0 617047 7.6 TBP PKNOX1 CBX3 ZFP64 YBX1 RAD21 CBX5 ZNF366 SCRT2 ZNF143 ZEB1-AS1 SVILP1 LOC105376480
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZEB1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZEB1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000352898 47 5201 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for ZEB1-AS1 Gene

Chromosome:
10
Start:
31,206,278 bp from pter
End:
31,320,447 bp from pter
Size:
114,170 bases
Orientation:
Minus strand

Genomic View for ZEB1-AS1 Gene

Genes around ZEB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZEB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZEB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZEB1-AS1 Gene

Proteins for ZEB1-AS1 Gene

Post-translational modifications for ZEB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZEB1-AS1 Gene

Domains & Families for ZEB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZEB1-AS1 Gene

Function for ZEB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZEB1-AS1 Gene

Localization for ZEB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZEB1-AS1 Gene

Pathways & Interactions for ZEB1-AS1 Gene

SuperPathways for ZEB1-AS1 Gene

No Data Available

Interacting Proteins for ZEB1-AS1 Gene

Gene Ontology (GO) - Biological Process for ZEB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZEB1-AS1 Gene

Transcripts for ZEB1-AS1 Gene

mRNA/cDNA for ZEB1-AS1 Gene

(4) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZEB1-AS1 Gene

ZEB1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZEB1-AS1 Gene

No ASD Table

Relevant External Links for ZEB1-AS1 Gene

GeneLoc Exon Structure for
ZEB1-AS1
ECgene alternative splicing isoforms for
ZEB1-AS1

Expression for ZEB1-AS1 Gene

mRNA expression in normal human tissues for ZEB1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZEB1-AS1 Gene:

Hs.372654
genes like me logo Genes that share expression patterns with ZEB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZEB1-AS1 Gene

Orthologs for ZEB1-AS1 Gene

Evolution for ZEB1-AS1 Gene

ENSEMBL:
Gene Tree for ZEB1-AS1 (if available)
TreeFam:
Gene Tree for ZEB1-AS1 (if available)

No data available for Orthologs for ZEB1-AS1 Gene

Paralogs for ZEB1-AS1 Gene

No data available for Paralogs for ZEB1-AS1 Gene

Variants for ZEB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZEB1-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs11008457 -- 31,317,350(+) AAAAC(A/G)TTGTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111494832 -- 31,317,013(+) AGTTA(A/C)CTGAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111780250 -- 31,320,878(+) CGCCC(C/T)GGTAC intron-variant, upstream-variant-2KB
rs112732522 -- 31,316,254(+) TCAGC(A/C)TATAT intron-variant
rs113112857 -- 31,319,544(+) CCCGC(C/T)GCCCC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZEB1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv831824 CNV loss 17160897

Relevant External Links for ZEB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZEB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZEB1-AS1 Gene

Disorders for ZEB1-AS1 Gene

Relevant External Links for ZEB1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZEB1-AS1

No disorders were found for ZEB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZEB1-AS1 Gene

Publications for ZEB1-AS1 Gene

  1. Upregulation of long noncoding RNA ZEB1-AS1 promotes tumor metastasis and predicts poor prognosis in hepatocellular carcinoma. (PMID: 26073087) Li T. … Zhu Z. (Oncogene 2015) 3 64
  2. Expression of long non-coding RNA ZEB1-AS1 in esophageal squamous cell carcinoma and its correlation with tumor progression and patient survival. (PMID: 26617942) Wang Y.L. … Wang Z.M. (Int J Clin Exp Pathol 2015) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZEB1-AS1 Gene

Sources for ZEB1-AS1 Gene

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