Aliases for ZEB1 Gene
Aliases for ZEB1 Gene
- Zinc Finger E-Box Binding Homeobox 1 2 3 5
- Transcription Factor 8 (Represses Interleukin 2 Expression) 2 3
- Posterior Polymorphous Corneal Dystrophy 3 2 3
- Negative Regulator Of IL2 3 4
- AREB6 3 4
- TCF8 3 4
- Zinc Finger Homeodomain Enhancer-Binding Protein 3
- Delta-Crystallin Enhancer Binding Factor 1 3
- Zinc Finger E-Box-Binding Homeobox 1 3
- NIL-2-A Zinc Finger Protein 4
External Ids for ZEB1 Gene
- HGNC: 11642
- Entrez Gene: 6935
- Ensembl: ENSG00000148516
- OMIM: 189909
- UniProtKB: P37275
Previous HGNC Symbols for ZEB1 Gene
- TCF8
- PPCD3
Previous GeneCards Identifiers for ZEB1 Gene
- GC10P031648
Summaries for ZEB1 Gene
-
This gene encodes a zinc finger transcription factor. The encoded protein likely plays a role in transcriptional repression of interleukin 2. Mutations in this gene have been associated with posterior polymorphous corneal dystrophy-3 and late-onset Fuchs endothelial corneal dystrophy. Alternatively spliced transcript variants encoding different isoforms have been described.[provided by RefSeq, Mar 2010]
GeneCards Summary for ZEB1 Gene
ZEB1 (Zinc Finger E-Box Binding Homeobox 1) is a Protein Coding gene. Diseases associated with ZEB1 include Corneal Dystrophy, Fuchs Endothelial, 6 and Corneal Dystrophy, Posterior Polymorphous, 3. Among its related pathways are Diuretics Pathway, Pharmacodynamics and Innate Immune System. GO annotations related to this gene include nucleic acid binding and chromatin binding. An important paralog of this gene is ZEB2.
UniProtKB/Swiss-Prot for ZEB1 Gene
-
Acts as a transcriptional repressor. Inhibits interleukin-2 (IL-2) gene expression. Enhances or represses the promoter activity of the ATP1A1 gene depending on the quantity of cDNA and on the cell type. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5-CANNTG-3). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.
No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZEB1 Gene
Genomics for ZEB1 Gene
Regulatory Elements for ZEB1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH10G031353 | 0.8 | ENCODE | 12.9 | +35.3 | 35312 | 0.2 | PKNOX1 FOXA2 BRCA1 RAD21 CBX5 FOS RELB JUNB TBX21 ZNF217 | ZEB1-AS1 ZEB1 GC10M031352 LOC101929946 |
| GH10G031090 | 1 | ENCODE dbSUPER | 4.9 | -227.4 | -227420 | 0.6 | PKNOX1 MTA2 CBFB BHLHE40 NR2F1 GATAD2B DPF2 TBX21 EP300 RELA | ENSG00000272381 ZEB1 GC10P031099 GC10M031018 |
| GH10G031752 | 2 | FANTOM5 Ensembl ENCODE dbSUPER | 1.6 | +438.9 | 438890 | 9.1 | HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 YY1 ZNF548 | ENSG00000226842 KIF5B ZEB1 ENSG00000222412 HMGB1P7 |
| GH10G031316 | 1.6 | Ensembl ENCODE dbSUPER | 0.7 | +1.6 | 1601 | 6.2 | HDGF PKNOX1 AGO1 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 | ZEB1-AS1 ZEB1 |
| GH10G031314 | 1.5 | Ensembl ENCODE dbSUPER | 0.7 | -3.1 | -3134 | 2.4 | HDGF SIN3A ZBTB7B GLIS2 GATA2 ELK1 ZNF143 KLF7 FOS KLF13 | ZEB1-AS1 ZEB1 GC10P031309 |
- Transcription factor binding sites by QIAGEN in the ZEB1 gene promoter:
Regulatory Element Products
Genomic Location for ZEB1 Gene
- Chromosome:
- 10
- Start:
- 31,318,495 bp from pter
- End:
- 31,529,814 bp from pter
- Size:
- 211,320 bases
- Orientation:
- Plus strand
Genomic View for ZEB1 Gene
- Cytogenetic band:
-
- 10p11.22 by Ensembl
- 10p11.22 by Entrez Gene
- 10p11.22 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ZEB1 Gene
Proteins for ZEB1 Gene
-
Protein details for ZEB1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P37275-ZEB1_HUMAN
- Recommended name:
- Zinc finger E-box-binding homeobox 1
- Protein Accession:
- P37275
- B4DJV0
- B4DUW9
- E9PCM7
- F5H4I8
- Q12924
- Q13800
- Q2KJ05
- Q5T968
- Q5VZ84
- Q8NB68
Protein attributes for ZEB1 Gene
- Size:
- 1124 amino acids
- Molecular mass:
- 124074 Da
- Quaternary structure:
-
- Interacts (via N-terminus) with SMARCA4/BRG1.
- SequenceCaution:
-
- Sequence=BAG62481.1; Type=Frameshift; Positions=177; Evidence={ECO:0000305};
Protein Expression for ZEB1 Gene
Post-translational modifications for ZEB1 Gene
Other Protein References for ZEB1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
-
- NP_001121600.1
- NP_001167564.1
- NP_001167565.1
- NP_001167566.1
- NP_001167567.1
- NP_001310567.1
- NP_001310570.1
- NP_001310571.1
- NP_001310572.1
- NP_001310573.1
- NP_001310574.1
- NP_001310575.1
- NP_001310576.1
- NP_001310577.1
- NP_001310578.1
- NP_001310579.1
- NP_001310580.1
- NP_001310581.1
- NP_001310582.1
- NP_001310583.1
- NP_001310584.1
- NP_001310585.1
- NP_001310586.1
- NP_001310587.1
- NP_001310588.1
- NP_001310589.1
- NP_001310590.1
- NP_001310591.1
- NP_001310592.1
- NP_001310593.1
- NP_001310594.1
- NP_001310595.1
- NP_001310600.1
- NP_001310601.1
- NP_001310602.1
- NP_001310603.1
- NP_001310604.1
- NP_001310605.1
- NP_001310606.1
- NP_001310607.1
- NP_110378.3
- XP_006717561.1
- XP_011517945.1
- XP_016872086.1
- XP_016872087.1
- XP_016872088.1
- XP_016872089.1
- XP_016872090.1
- XP_016872091.1
- XP_016872092.1
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for ZEB1
- R&D Systems Antibodies for ZEB1 (ZEB1)
- Cell Signaling Technology (CST) Antibodies for ZEB1 (TCF8)
-
Custom Antibody ServicesOriGene Antibodies for ZEB1
- AP55676PU-N
- TA802298AM
- TA802298BM
- TA802298CM
- TA802298DM
- TA802298EM
- CF802351
- TA802351
- CF802338
- TA802338
- CF802336
- TA802336
- CF802321
- TA802321
- CF802313
- TA802313
- CF802311
- TA802311
- CF802309
- TA802309
- CF802302
- TA802302
- CF802298
- TA802298
- CF802295
- TA802295
- TA590279
- TA336943
- TA336897
- TA332781
- TA332404
- TA319713
- TA310041
- TA305688
- TA802338JM
- TA802338HM
- TA802338GM
- TA802338FM
- TA802338EM
- TA802338DM
- TA802338CM
- TA802338BM
- TA802338AM
- TA802336JM
- TA802336HM
- TA802336GM
- TA802336FM
- TA802336EM
- TA802336DM
- TA802336CM
- TA802336BM
- TA802336AM
- TA802313JM
- TA802313HM
- TA802313GM
- TA802313FM
- TA802313EM
- TA802313DM
- TA802313CM
- TA802313BM
- TA802313AM
- TA802311JM
- TA802311HM
- TA802311GM
- TA802311FM
- TA802311EM
- TA802311DM
- TA802311CM
- TA802311BM
- TA802311AM
- TA802302JM
- TA802302HM
- TA802302GM
- TA802302FM
- TA802302EM
- TA802302DM
- TA802302CM
- TA802302BM
- TA802302AM
- TA802298S
- TA802298JM
- TA802298HM
- TA802298GM
- TA802298FM
- Novus Biologicals Antibodies for ZEB1
-
Abcam antibodies for ZEB1
- Invitrogen Antibodies for ZEB1
- antibodies-online Antibodies for ZEB1: See all 111
- GeneTex ZEB1 antibody for ZEB1
-
Custom Antibody ServicesProSci Antibodies for ZEB1
-
Santa Cruz Biotechnology (SCBT) Antibodies for ZEB1
Protein Products
-
OriGene Purified Proteins for ZEB1
- Search Origene for MassSpec and Protein Over-expression Lysates for ZEB1
- Origene Custom Protein Services for ZEB1
- Search GeneTex for Proteins for ZEB1
-
Abcam proteins for ZEB1
Assay Products
- antibodies-online Kits for ZEB1: See all 7
No data available for DME Specific Peptides for ZEB1 Gene
Domains & Families for ZEB1 Gene
Gene Families for ZEB1 Gene
Protein Domains for ZEB1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ZEB1 Gene
Graphical View of Domain Structure for InterPro Entry
P37275- Family:
-
- Belongs to the delta-EF1/ZFH-1 C2H2-type zinc-finger family.
Function for ZEB1 Gene
Molecular function for ZEB1 Gene
- UniProtKB/Swiss-Prot Function:
- Acts as a transcriptional repressor. Inhibits interleukin-2 (IL-2) gene expression. Enhances or represses the promoter activity of the ATP1A1 gene depending on the quantity of cDNA and on the cell type. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5-CANNTG-3). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding | IDA | 23765923 |
| GO:0003676 | nucleic acid binding | IEA | -- |
| GO:0003677 | DNA binding | IEA | -- |
| GO:0003682 | chromatin binding | IEA | -- |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding | TAS | 8138542 |
Phenotypes for ZEB1 Gene
- MGI mutant phenotypes for ZEB1:
-
inferred from 7 alleles
- mortality/aging
- behavior/neurological phenotype
- growth/size/body region phenotype
- immune system phenotype
- muscle phenotype
- nervous system phenotype
- homeostasis/metabolism phenotype
- cardiovascular system phenotype
- respiratory system phenotype
- digestive/alimentary phenotype
- neoplasm
- reproductive system phenotype
- endocrine/exocrine gland phenotype
- vision/eye phenotype
- hearing/vestibular/ear phenotype
- integument phenotype
- limbs/digits/tail phenotype
- skeleton phenotype
- embryo phenotype
- pigmentation phenotype
- hematopoietic system phenotype
- craniofacial phenotype
- adipose tissue phenotype
- taste/olfaction phenotype
- GenomeRNAi human phenotypes for ZEB1:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- shRNA abundance <= 50%
- Decreased viability in esophageal squamous lineage
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection
- Decreased NF-kappaB reporter expression
- Increased transferrin (TF) endocytosis
- Increased G1 DNA content
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after viral supernatant infection
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after direct virus infection
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ZEB1
-
- Search ViGene Biosciences for ZEB1
CRISPR Products
-
OriGene CRISPR knockouts for ZEB1
-
Santa Cruz Biotechnology (SCBT) CRISPR for ZEB1
- GenScript: Design CRISPR guide RNA sequences for ZEB1
miRNA for ZEB1 Gene
- miRTarBase miRNAs that target ZEB1
-
- hsa-mir-141-3p (MIRT000317)
- hsa-mir-429 (MIRT001743)
- hsa-mir-200c-3p (MIRT002286)
- hsa-mir-205-5p (MIRT002478)
- hsa-mir-200a-3p (MIRT002480)
- hsa-mir-200b-3p (MIRT002483)
- hsa-mir-150-5p (MIRT006984)
- hsa-mir-130b-3p (MIRT007059)
- hsa-mir-335-5p (MIRT018433)
- hsa-mir-101-3p (MIRT053160)
- hsa-mir-23b-3p (MIRT053244)
- hsa-mir-591 (MIRT053387)
- hsa-mir-629-5p (MIRT053407)
- hsa-mir-203a-3p (MIRT053444)
- hsa-mir-494-3p (MIRT053515)
- hsa-mir-539-5p (MIRT053516)
- hsa-mir-655-3p (MIRT054485)
- hsa-mir-1236-3p (MIRT054560)
- hsa-mir-183-5p (MIRT054653)
- hsa-mir-96-5p (MIRT054654)
- hsa-mir-142-5p (MIRT437940)
- hsa-mir-574-5p (MIRT607020)
- hsa-mir-4455 (MIRT607021)
- hsa-mir-5010-3p (MIRT607022)
- hsa-mir-2113 (MIRT607023)
- hsa-mir-147a (MIRT607024)
- hsa-mir-6818-5p (MIRT607025)
- hsa-mir-6867-5p (MIRT607026)
Transcription Factor Targets for ZEB1 Gene
miRNA Products
- Search ViGene Biosciences for ZEB1
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for ZEB1
- Browse OriGene Inhibitory RNA Products For ZEB1
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for ZEB1
- VectorBuilder custom plasmid, inducible vectors for ZEB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ZEB1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for ZEB1
Flow Cytometry Products
- eBioscience FlowRNA Probe Sets (VA1-12650 VA6-13725) for ZEB1
No data available for Enzyme Numbers (IUBMB) and HOMER Transcription for ZEB1 Gene
Localization for ZEB1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ZEB1 Gene
- Nucleus.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA,IDA | 20418909 |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0005667 | transcription factor complex | IEA | -- |
| GO:0005829 | cytosol | IDA | -- |
Pathways & Interactions for ZEB1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Human Embryonic Stem Cell Pluripotency | ||
| 2 | ERK Signaling |
.58
|
.49
|
| 3 | Cytokine Signaling in Immune system | ||
| 4 | MicroRNAs in cancer | ||
| 5 | Transcriptional misregulation in cancer | ||
Pathways by source for ZEB1 Gene
1 Cell Signaling Technology pathway for ZEB1 Gene
3 BioSystems pathways for ZEB1 Gene
4 Reactome pathways for ZEB1 Gene
1 PharmGKB pathway for ZEB1 Gene
2 KEGG pathways for ZEB1 Gene
7 Qiagen pathways for ZEB1 Gene
Interacting Proteins for ZEB1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | IDA | 23765923 |
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter | TAS | 8138542 |
| GO:0006955 | immune response | TAS | 1840704 |
Drugs & Compounds for ZEB1 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Zinc | Approved | Pharma | 2296 |
Transcripts for ZEB1 Gene
mRNA/cDNA for ZEB1 Gene
- (50) REFSEQ mRNAs :
- (27) Additional mRNA sequences :
- (224) Selected AceView cDNA sequences:
- (25) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ZEB1 Gene
- Zinc finger E-box binding homeobox 1:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for ZEB1
-
Santa Cruz Biotechnology (SCBT) CRISPR for ZEB1
- GenScript: Design CRISPR guide RNA sequences for ZEB1
miRNA Products
- Search ViGene Biosciences for ZEB1
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for ZEB1
- Browse OriGene Inhibitory RNA Products For ZEB1
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for ZEB1
- VectorBuilder custom plasmid, inducible vectors for ZEB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ZEB1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
- eBioscience FlowRNA Probe Sets (VA1-12650 VA6-13725) for ZEB1
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | ||||||||||||||||||||||||||||||
| SP2: | - | - | |||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | ||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | - | |||||||||||||||||||||||||||
| SP5: | - | - | - | ||||||||||||||||||||||||||||||
| SP6: |
Expression for ZEB1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Blood (Cardiovascular System)
- Definitive Hematopoietic Stem Cells Definitive Yolk Sac
- pre Conventional Dendritic Cells Peripheral Blood
-
Kidney (Urinary System)
- Metanephric Mesenchyme Cells Metanephric Mesenchyme
- S-shaped Body
-
Eye (Sensory Organs)
- Keratoblasts Corneal Stroma
- Mature Endothelial Cells Corneal Endothelium
- Brain (Nervous System)
- Neural Tube (Nervous System)
-
Yolk Sac (Extraembryonic Tissues)
- Definitive Hematopoietic Stem Cells Definitive Yolk Sac
-
Ovary (Reproductive System)
- Ovarian Mesenchymal Stroma Cells Ovary Interstitium
-
Head Mesenchyme (Muscoskeletal System)
- Dental Mesenchymal Cells Branchial Arch 1
-
Tooth
- Dental Mesenchymal Cells Branchial Arch 1
-
Endothelium (Cardiovascular System)
- Mature Endothelial Cells Corneal Endothelium
- Dermis (Integumentary System)
- Fibroblasts
-
Uterus (Reproductive System)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZEB1 Gene
NURSA nuclear receptor signaling pathways regulating expression of ZEB1 Gene:
ZEB1SOURCE GeneReport for Unigene cluster for ZEB1 Gene:
Hs.124503mRNA Expression by UniProt/SwissProt for ZEB1 Gene:
P37275-ZEB1_HUMANEvidence on tissue expression from TISSUES for ZEB1 Gene
- Gall bladder(5)
- Nervous system(4.9)
- Lung(2.9)
- Muscle(2.7)
- Heart(2.4)
- Intestine(2.4)
- Kidney(2.4)
- Lymph node(2.3)
Phenotype-based relationships between genes and organs from Gene ORGANizer for ZEB1 Gene
- ectoderm
- endoderm
- mesoderm
- cardiovascular
- digestive
- immune
- nervous
- skeletal muscle
- skeleton
- eye
- head
- jaw
- mandible
- maxilla
- mouth
- skull
- tooth
- abdominal wall
- intestine
- blood vessel
Primer Products
-
OriGene qPCR primer pairs for ZEB1
No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for ZEB1 Gene
Orthologs for ZEB1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ZEB1 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | ZEB1 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | ZEB1 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Zeb1 34 16 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | ZEB1 35 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Zeb1 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | ZEB1 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | ZEB1 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | ZEB1 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | zeb1 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | zeb1b 34 35 |
|
||
| zeb1a 35 |
|
OneToMany | |||
| zfhx1 34 |
|
||||
| worm (Caenorhabditis elegans) |
Secernentea | F58G1.2 35 |
|
ManyToMany | |
| tra-4 35 |
|
ManyToMany |
- Species where no ortholog for ZEB1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for ZEB1 Gene
(29) SIMAP similar genes for ZEB1 Gene using alignment to 11 proteins:
Variants for ZEB1 Gene
| SNP ID | Clin | Chr 10 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs118020901 | Pathogenic, Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270] | 31,521,854(+) | TCCCC(A/C)GGTGG | reference, missense | |
| rs199944415 | Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270] | 31,521,764(+) | TGCCC(A/C/G)GTTAC | reference, missense | |
| rs567252241 | Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270] | 31,521,422(+) | CACCA(A/G)TGGTT | reference, missense | |
| rs779148597 | Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270] | 31,521,255(+) | GTGCA(G/T)TCTTC | reference, missense | |
| rs781750314 | Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270] | 31,521,280(+) | CTGAA(C/G)CAGGC | reference, missense |
Relevant External Links for ZEB1 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZEB1 Gene
Disorders for ZEB1 Gene
(10) MalaCards diseases for ZEB1 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| corneal dystrophy, fuchs endothelial, 6 |
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| corneal dystrophy, posterior polymorphous, 3 |
|
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| corneal dystrophy, posterior polymorphous, 1 |
|
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| fuchs' endothelial dystrophy |
|
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| corneal dystrophy |
|
|
UniProtKB/Swiss-Prot
ZEB1_HUMAN- Corneal dystrophy, Fuchs endothelial, 6 (FECD6) [MIM:613270]: A corneal disease caused by loss of endothelium of the central cornea. It is characterized by focal wart-like guttata that arise from Descemet membrane and develop in the central cornea, epithelial blisters, reduced vision and pain. Descemet membrane is thickened by abnormal collagenous deposition. {ECO:0000269 PubMed:20036349, ECO:0000269 PubMed:23599324, ECO:0000269 PubMed:25190660}. Note=The disease is caused by mutations affecting the gene represented in this entry.
- Corneal dystrophy, posterior polymorphous, 3 (PPCD3) [MIM:609141]: A subtype of posterior corneal dystrophy, a disease characterized by alterations of Descemet membrane presenting as vesicles, opacities or band-like lesions on slit-lamp examination and specular microscopy. Affected patient typically are asymptomatic. {ECO:0000269 PubMed:16252232, ECO:0000269 PubMed:23599324}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Relevant External Links for ZEB1
No data available for Genatlas for ZEB1 Gene
Publications for ZEB1 Gene
- Mutations in TCF8 cause posterior polymorphous corneal dystrophy and ectopic expression of COL4A3 by corneal endothelial cells. (PMID: 16252232) Krafchak C.M. … Richards J.E. (Am. J. Hum. Genet. 2005) 2 3 4 22 64
- Missense mutations in TCF8 cause late-onset Fuchs corneal dystrophy and interact with FCD4 on chromosome 9p. (PMID: 20036349) Riazuddin S.A. … Katsanis N. (Am. J. Hum. Genet. 2010) 3 4 22 64
- Analysis of the posterior polymorphous corneal dystrophy 3 gene, TCF8, in late-onset Fuchs endothelial corneal dystrophy. (PMID: 18172091) Mehta J.S. … Aung T. (Invest. Ophthalmol. Vis. Sci. 2008) 3 22 46 64
- Posterior polymorphous corneal dystrophy is associated with TCF8 gene mutations and abdominal hernia. (PMID: 17935237) Aldave A.J. … Richards J.E. (Am. J. Med. Genet. A 2007) 3 22 46 64
- The TCF8 gene encoding a zinc finger protein (Nil-2-a) resides on human chromosome 10p11.2. (PMID: 1427828) Williams T.M. … Shows T.B. (Genomics 1992) 2 3 22 64
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Sources for ZEB1 Gene
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