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ZDBF2 Gene

protein-coding GIFtS: 43
GCID: GC02P207139

Zinc Finger, DBF-Type Containing 2

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MalaCards

disease database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Zinc Finger, DBF-Type Containing 2¹ ²
DBF4-Type Zinc Finger-Containing Protein 2²
Zinc Finger DBF-Type Containing 2 Vesion 1²
Zinc Finger DBF-Type Containing 2 Vesion 2²
KIAA1571³

External Ids:	HGNC: 29313¹	Entrez Gene: 57683²	Ensembl: ENSG00000204186⁷	UniProtKB: Q9HCK1³

Export aliases for ZDBF2 gene to outside databases

Previous GC identifers: GC02P206848 GC02P198990

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZDBF2 Gene:

ZDBF2 (zinc finger, DBF-type containing 2) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence at NCBI GenBank:

NC_000002.11 NT_005403.18 NC_018913.2

Regulatory elements:

Regulatory transcription factor binding sites in the ZDBF2 gene promoter:
SRF Sox5 USF1 p300 Brachyury SRF (504 AA) IRF-1 Evi-1 USF-1
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search Chromatin IP Primers for ZDBF2

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZDBF2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q33.3 Ensembl cytogenetic band: 2q33.3 HGNC cytogenetic band: 2q33.3

ZDBF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZDBF2 gene location

GeneLoc information about chromosome 2 GeneLoc Exon Structure

GeneLoc location for GC02P207139: view genomic region (about GC identifiers)

Start:	207,139,387 bp from pter	End:	207,179,148 bp from pter
Size:	39,762 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, antibodies-online, and/or GeneTex,
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About This Section

UniProtKB/Swiss-Prot: ZDBF2_HUMAN, Q9HCK1 (See protein sequence)

Recommended Name: DBF4-type zinc finger-containing protein 2

Size: 2354 amino acids; 265618 Da

Sequence caution: Sequence=BAC85454.1; Type=Erroneous initiation;

Secondary accessions: Q6ZNP7 Q6ZSN8

Explore the universe of human proteins at neXtProt for ZDBF2: NX_Q9HCK1

Explore proteomics data for ZDBF2 at MOPED

Post-translational modifications:

Ubiquitination² at Lys2133

Modification sites at PhosphoSitePlus

See ZDBF2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts):

NP_001272478.1 NP_065974.1

ENSEMBL proteins:

ENSP00000363545

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GenesLikeMe)
About This Section

HGNC Gene Families:

ZDBF: Zinc fingers, DBF-type

1 InterPro protein domain:

IPR006572 Znf_DBF

Graphical View of Domain Structure for InterPro Entry Q9HCK1

ProtoNet protein and cluster: Q9HCK1

UniProtKB/Swiss-Prot: ZDBF2_HUMAN, Q9HCK1

Similarity: Contains 1 DBF4-type zinc finger

Find genes that share domains with ZDBF2 About GenesLikeMe

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

Gene Ontology (GO): 2 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	IEA	--
GO:0008270	zinc ion binding	IEA	--

Find genes that share ontologies with ZDBF2 About GenesLikeMe

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
nucleus	3
cytosol	2
plasma membrane	1

About this image

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GenesLikeMe, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

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Interactions:

Search GeneGlobe Interaction Network for ZDBF2

1 Interacting protein for ZDBF2 (Q9HCK1³) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PPP1CA	P62136³	I2D: score=1

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, Sets of similar genes according to GenesLikeMe)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
About This Section

REFSEQ mRNAs for ZDBF2 gene (8 alternative transcripts):

NM_001285549.1 NM_020923.2 XM_005246711.1 XM_005246712.2 XM_005246713.1 XM_006712656.1 XM_006712657.1 XM_006712658.1

Unigene Cluster for ZDBF2:

Zinc finger, DBF-type containing 2

Hs.110489 [show with all ESTs]

Unigene Representative Sequence: NM_020923

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000374423(uc002vbp.2)

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Additional mRNA sequence:

AB046791.2 AK024339.1 AK127271.1 AK130893.1

2 DOTS entries:

DT.206131 DT.100741554

17 AceView cDNA sequences:

AI128443 AU137494 BX093847 AI151388 AI128504 CB160399 AK002005 BC028329

BX113617 BE535795 T58264 AI653148 AU157195 T54342 BE734382 T85180

T84296

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GenesLikeMe, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZDBF2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TAAAACTAAT

About this image

ZDBF2 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database
selected tissues (see all 4) fully expand


Pancreas (Endocrine System) fully expand to see all 4 entries
Endocrine Progenitor Cells Ventral Pancreatic Bud

Heart (Cardiovascular System)
Cardiac Fibroblasts Myocardium

Fibroblasts
Cardiac Fibroblasts Myocardium

Blood (Hematopoietic System)
Hematopoietic Stem Cells Hematopoietic Bone Marrow

ZDBF2 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

ZDBF2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.110489

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for ZDBF2 gene from Selected species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zdbf2^{1 , 5}	zinc finger, DBF-type containing 2^{1, 5}	70.16(n)¹ 50.58(a)¹		1 (32.31 cM)⁵ 73884¹ NM_001285936.1¹ NP_001272865.1¹ 63273265⁵
chicken (Gallus gallus)	Aves	ZDBF2⁶	zinc finger, DBF-type containing 2	28(a)	1 ↔ 1	7(12036611-12047108)
lizard (Anolis carolinensis)	Reptilia	-- --	Uncharacterized protein	31(a) 14(a)	many → 1 many → 1	GL343208.1(540160-551525) GL343208.1(538657-538878)

ENSEMBL Gene Tree for ZDBF2 (if available)
TreeFam Gene Tree for ZDBF2 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68,Sets of similar genes according to GenesLikeMe)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section

SNP ID	Valid	Clinical significance	Chr 2 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs80232984^1,2	F	--	207137706(+)	`CAATGG/TTGTTA`	1	--	us2k¹		1		EA	120
rs184515270^1,2		--	207137756(+)	`CTATCA/GAGAAT`	1	--	us2k¹		0	--	--	--	--
rs190790138^1,2		--	207137768(+)	`ATATCC/GAAGTT`	1	--	us2k¹		0	--	--	--	--
rs74867423^1,2	C,F	--	207137823(+)	`CATATA/GTGGGT`	1	--	us2k¹		2		CSA WA	120
rs141411926^1,2		--	207137966(+)	`TTCTCC/TAGGCA`	1	--	us2k¹		0	--	--	--	--
rs147018010^1,2	C	--	207137967(+)	`TCTCCA/GGGCAA`	1	--	us2k¹		0	--	--	--	--
rs6729275^1,2	C,F	--	207138034(+)	`TAATTC/TCCTTC`	1	--	us2k¹ tfbs³ trp³		1		WA	118
rs6729374^1,2	C,F	--	207138073(+)	`ATGCAC/TTTATC`	1	--	us2k¹		1		WA	118
rs72948932^1,2	C	--	207138127(+)	`AATACA/G/TTGGAG`	1	--	us2k¹		4		NA WA EA	360
rs139021100^1,2		--	207138133(+)	`TGGAGA/GTAATG`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for ZDBF2 (207139387 - 207179148 bp)

Structural Variations
Database of Genomic Variants (DGV) 2 variations for ZDBF2: About this table

Variant ID	Type	Subtype	PubMed ID
nsv875738	CNV	Gain	21882294
nsv834516	CNV	Gain	17160897

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB, Sets of similar genes according to GenesLikeMe)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZDBF2 gene, integrated from 10 sources (see all 11):
(articles sorted by number of sources associating them with ZDBF2)

Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)^{1, 2, 3} Nagase T.... Ohara O. (DNA Res. 2000)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (Nat. Genet. 2004)
Protein phosphatase 1I^ isoforms linked interactions in the brain. (PubMed id 23080069)¹ Esteves S.L....da Cruz e Silva E.F. (J. Mol. Neurosci. 2013)
Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)¹ Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc. (PubMed id 23764515)¹ Kobayashi H....Kono T. (Epigenetics 2013)
The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)¹ Cox J.L....Rizzino A. (PLoS ONE 2013)
Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PubMed id 22688191)¹ Bergen S.E....Sullivan P.F. (Mol. Psychiatry 2012)
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)¹ Wagner S.A....Choudhary C. (amp 2011)
Identification of the mouse paternally expressed imprinted gene Zdbf2 on chromosome 1 and its imprinted human homolog ZDBF2 on chromosome 2. (PubMed id 19200453)¹ Kobayashi H....Kono T. (Genomics 2009)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)² Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 57683	HGNC: 29313	AceView: KIAA1571	Ensembl:ENSG00000204186	euGenes: HUgn57683
ECgene: ZDBF2	H-InvDB: ZDBF2

(According to HUGE)
About This Section

HUGE: KIAA1571

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ZDBF2	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZDBF2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for ZDBF2 gene:
Search GeneIP for patents involving ZDBF2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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About This Section


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Hot genes Disease genes ZDBF2 gene at Home site.

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ZDBF2 Gene

Zinc Finger, DBF-Type Containing 2

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ZDBF2 Gene

Zinc Finger, DBF-Type Containing 2

Aliasesfor ZDBF2 gene

Summariesfor ZDBF2 gene

Genomic Viewsfor ZDBF2 gene

Proteinsfor ZDBF2 gene

ZDBF2 Human Recombinant Protein Products:

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Expression for ZDBF2 gene

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for ZDBF2 gene

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for ZDBF2 gene

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for ZDBF2 gene

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for ZDBF2 gene

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for ZDBF2 gene

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for ZDBF2 gene

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