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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

ZDBF2 Gene

protein-coding GIFtS: 41
GCID: GC02P207139

Zinc Finger, DBF-Type Containing 2

Search for ZDBF2
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Zinc Finger, DBF-Type Containing 2¹ ²
DBF4-Type Zinc Finger-Containing Protein 2²
Zinc Finger DBF-Type Containing 2 Vesion 1²
Zinc Finger DBF-Type Containing 2 Vesion 2²
KIAA1571³

External Ids:	HGNC: 29313¹	Entrez Gene: 57683²	Ensembl: ENSG00000204186⁷	UniProtKB: Q9HCK1³

Export aliases for ZDBF2 gene to outside databases

Previous GC identifers: GC02P206848 GC02P198990

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZDBF2 Gene:

ZDBF2 (zinc finger, DBF-type containing 2) is a protein-coding gene. GO annotations related to this gene include zinc ion binding and nucleic acid binding.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000002.11 NT_005403.17 NC_018913.2

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the ZDBF2 gene promoter:
SRF Sox5 USF1 p300 Brachyury SRF (504 AA) IRF-1 Evi-1 USF-1
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for ZDBF2

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZDBF2

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q33.3 Ensembl cytogenetic band: 2q33.3 HGNC cytogenetic band: 2q33.3

ZDBF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZDBF2 gene location

GeneLoc information about chromosome 2 GeneLoc Exon Structure

GeneLoc location for GC02P207139: view genomic region (about GC identifiers)

Start:	207,139,387 bp from pter	End:	207,179,148 bp from pter
Size:	39,762 bases	Orientation:	plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZDBF2_HUMAN, Q9HCK1 (See protein sequence)

Recommended Name: DBF4-type zinc finger-containing protein 2

Size: 2354 amino acids; 265618 Da

Sequence caution: Sequence=BAC85454.1; Type=Erroneous initiation;

Secondary accessions: Q6ZNP7 Q6ZSN8

Explore the universe of human proteins at neXtProt for ZDBF2: NX_Q9HCK1

Explore proteomics data for ZDBF2 at MOPED

Post-translational modifications:

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_Q9HCK1

ZDBF2 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins: NP_065974.1

ENSEMBL proteins:

ENSP00000363545

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

ZDBF: Zinc fingers, DBF-type

1 InterPro protein domain:

IPR006572 Znf_DBF

Graphical View of Domain Structure for InterPro Entry Q9HCK1

ProtoNet protein and cluster: Q9HCK1

UniProtKB/Swiss-Prot: ZDBF2_HUMAN, Q9HCK1

Similarity: Contains 1 DBF4-type zinc finger

ZDBF2 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	IEA	--
GO:0008270	zinc ion binding	IEA	--

ZDBF2 for ontologies About GeneDecksing

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for ZDBF2

1 Interacting protein for ZDBF2 (Q9HCK1³) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PPP1CA	P62136³	I2D: score=1

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

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Search CenterWatch for drugs/clinical trials and news about ZDBF2

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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About This Section

REFSEQ mRNAs for ZDBF2 gene:

NM_020923.1

Unigene Cluster for ZDBF2:

Zinc finger, DBF-type containing 2

Hs.110489 [show with all ESTs]

Unigene Representative Sequence: NM_020923

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000374423(uc002vbp.2)

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Additional mRNA sequence:

AB046791.2 AK024339.1 AK127271.1 AK130893.1

2 DOTS entries:

DT.206131 DT.100741554

17 AceView cDNA sequences:

CB160399 AI128443 AI151388 BX093847 AI128504 AU137494 BX113617 AK002005

BC028329 AI653148 BE535795 T58264 AU157195 T54342 BE734382 T85180

T84296

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZDBF2 expression in normal human tissues (normalized intensities) ZDBF2 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TAAAACTAAT

About this image

ZDBF2 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/3 selected tissues (see all 3) fully expand


Pancreas (Endocrine System) fully expand to see all 4 entries
Endocrine Progenitor Cells Ventral Pancreatic Bud

Heart (Cardiovascular System)
Cardiac Fibroblasts Myocardium

Blood (Hematopoietic System)
Hematopoietic Stem Cells Hematopoietic Bone Marrow

See ZDBF2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZDBF2

SOURCE GeneReport for Unigene cluster: Hs.110489

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for ZDBF2 gene from 3/9 species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zdbf2^{1 , 5}	zinc finger, DBF-type containing 2^{1, 5}	69.42(n)¹ 49.91(a)¹		1 (32.31 cM)⁵ 73884¹ NM_028673.1¹ NP_082949.1¹ 63273265⁵
chicken (Gallus gallus)	Aves	ZDBF2⁶	Uncharacterized protein	26(a)	1 ↔ 1	7(12036611-12047108)
lizard (Anolis carolinensis)	Reptilia	ZDBF2⁶	Uncharacterized protein	32(a)	1 ↔ 1	GL343208.1(540160-551525)

ENSEMBL Gene Tree for ZDBF2 (if available)
TreeFam Gene Tree for ZDBF2 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 2 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs80232984^1,2	F	--	207137706(+)	`CAATGG/TTGTTA`	1	--	us2k¹		1		EA	120
rs184515270^1,2		--	207137756(+)	`CTATCA/GAGAAT`	1	--	us2k¹		0	--	--	--	--
rs190790138^1,2		--	207137768(+)	`ATATCC/GAAGTT`	1	--	us2k¹		0	--	--	--	--
rs74867423^1,2	C,F	--	207137823(+)	`CATATA/GTGGGT`	1	--	us2k¹		2		CSA WA	120
rs141411926^1,2		--	207137966(+)	`TTCTCC/TAGGCA`	1	--	us2k¹		0	--	--	--	--
rs147018010^1,2	C	--	207137967(+)	`TCTCCA/GGGCAA`	1	--	us2k¹		0	--	--	--	--
rs6729275^1,2	C,F	--	207138034(+)	`TAATTC/TCCTTC`	1	--	us2k¹ tfbs³ trp³		1		WA	118
rs6729374^1,2	C,F	--	207138073(+)	`ATGCAC/TTTATC`	1	--	us2k¹		1		WA	118
rs72948932^1,2	C	--	207138127(+)	`AATACA/G/TTGGAG`	1	--	us2k¹		4		NA WA EA	360
rs139021100^1,2		--	207138133(+)	`TGGAGA/GTAATG`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for ZDBF2 (207139387 - 207179148 bp)

Structural Variations
Database of Genomic Variants (DGV) 2 variations for ZDBF2: About this table

Variant ID	Type	Subtype	PubMed ID
nsv875738	CNV	Gain	21882294
nsv834516	CNV	Gain	17160897

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for ZDBF2 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZDBF2)

Utopia: connect your pdf to the dynamic
world of online information

Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10997877)^{1, 2, 3} Nagase T.... Ohara O. (2000)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Protein phosphatase 1g isoforms linked interactions in the brain. (PubMed id 23080069)¹ Esteves S.L....da Cruz e Silva E.F. (2013)
Interlaboratory reproducibility of large-scale human p rotein-complex analysis by standardized AP-MS. (PubMed id 23455922)¹ Varjosalo M....Superti-Furga G. (2013)
The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)¹ Cox J.L....Rizzino A. (2013)
Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared wit h bipolar disorder. (PubMed id 22688191)¹ Bergen S.E....Sullivan P.F. (2012)
A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)¹ Wagner S.A....Choudhary C. (2011)
Identification of the mouse paternally expressed impr inted gene Zdbf2 on chromosome 1 and its imprinted human homolog ZDBF2 on chrom osome 2. (PubMed id 19200453)¹ Kobayashi H....Kono T. (2009)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)² Dephoure N.... Gygi S.P. (2008)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)² Olsen J.V....Mann M. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 57683	HGNC: 29313	AceView: KIAA1571	Ensembl:ENSG00000204186	euGenes: HUgn57683
ECgene: ZDBF2	H-InvDB: ZDBF2

(According to HUGE)
About This Section

HUGE: KIAA1571

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for ZDBF2	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZDBF2 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for ZDBF2 gene:
Search GeneIP for patents involving ZDBF2

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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About This Section


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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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Category			TGFB1 (GIFtS: 73) transforming growth factor, beta 1
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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes ZDBF2 gene at Home site.

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ZDBF2 Gene

Zinc Finger, DBF-Type Containing 2

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ZDBF2 Gene

Zinc Finger, DBF-Type Containing 2

Aliasesfor ZDBF2 gene

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Proteinsfor ZDBF2 gene

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