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ZCWPW1 Gene

protein-coding   GIFtS: 43
GCID: GC07M099998

Zinc Finger, CW Type With PWWP Domain 1

(Previous names: zinc finger, CW-type with PWWP domain 1)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger, CW Type With PWWP Domain 11 2
Zinc Finger, CW-Type With PWWP Domain 11 2
ZCW12
Zinc Finger CW-Type PWWP Domain Protein 12

External Ids:    HGNC: 234861   Entrez Gene: 550632   Ensembl: ENSG000000784877   UniProtKB: Q9H0M43   

Export aliases for ZCWPW1 gene to outside databases

Previous GC identifers: GC07M099609 GC07M099643 GC07M099836 GC07M094634


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZCWPW1 Gene:
ZCWPW1 (zinc finger, CW type with PWWP domain 1) is a protein-coding gene. An important paralog of this gene is ZCWPW2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000007.13  NT_007933.16  NC_018918.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZCWPW1 gene promoter:
         Nkx2-5   Roaz   C/EBPalpha   Egr-2   CREB   HOXA5   deltaCREB   FOXO1a   Zic3   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZCWPW1 promoter sequence
   Search Chromatin IP Primers for ZCWPW1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZCWPW1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q22.1   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q22.1

ZCWPW1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZCWPW1 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M099998:  view genomic region     (about GC identifiers)

Start:
99,998,449 bp from pter      End:
100,026,615 bp from pter
Size:
28,167 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 99,358,580-99,386,387     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZCPW1_HUMAN, Q9H0M4 (See protein sequence)
Recommended Name: Zinc finger CW-type PWWP domain protein 1  
Size: 648 amino acids; 72007 Da
Sequence caution: Sequence=CAB66669.1; Type=Frameshift; Positions=487;
2 PDB 3D structures from and Proteopedia for ZCWPW1:
2E61 (3D)        2RR4 (3D)    
Secondary accessions: A8MVF5 B4DUQ2 Q8NA98 Q9BUD0 Q9NWF7
Alternative splicing: 5 isoforms:  Q9H0M4-1   Q9H0M4-2   Q9H0M4-3   Q9H0M4-4   Q9H0M4-5   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZCWPW1: NX_Q9H0M4

Explore proteomics data for ZCWPW1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZCWPW1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001244937.1  NP_060454.3  

    ENSEMBL proteins: 
     ENSP00000381109   ENSP00000419187   ENSP00000354210   ENSP00000418351   ENSP00000419447  
     ENSP00000314880  

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    antibodies-online proteins for ZCWPW1 (3 products) 

     
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    antibodies-online antibodies for ZCWPW1 (4 products) 

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    antibodies-online kits for ZCWPW1 (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR000313 PWWP_dom
     IPR011124 Znf_CW

    Graphical View of Domain Structure for InterPro Entry Q9H0M4

    ProtoNet protein and cluster: Q9H0M4

    2 Blocks protein domains:
    IPB000313 PWWP domain
    IPB011124 CW-type Zn-finger


    UniProtKB/Swiss-Prot: ZCPW1_HUMAN, Q9H0M4
    Similarity: Contains 1 CW-type zinc finger
    Similarity: Contains 1 PWWP domain


    Find genes that share domains with ZCWPW1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding IEA--
         
    Find genes that share ontologies with ZCWPW1           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for ZCWPW1:
     G0/1 arrest  Increased G1 DNA content 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZCWPW1

    miRNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZCWPW1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    golgi apparatus1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZCWPW1
    Interactions:

        Search GeneGlobe Interaction Network for ZCWPW1

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZCWPW1 (ZCPW1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZCWPW1 gene (2 alternative transcripts): 
    NM_001258008.1  NM_017984.4  

    Unigene Cluster for ZCWPW1:

    Zinc finger, CW type with PWWP domain 1
    Hs.105191  [show with all ESTs]
    Unigene Representative Sequence: NM_017984
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000479315 ENST00000398027(uc011kjp.2 uc011kjq.2 uc003uut.3)
    ENST00000490721(uc003uus.3) ENST00000490089(uc003uur.3) ENST00000360951(uc003uuu.1)
    ENST00000471336 ENST00000464510(uc011kjt.1 uc011kju.1) ENST00000472716
    ENST00000324725(uc011kjr.2)
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      QuantiTect SYBR Green Assays in human, mouse, rat ZCWPW1
      QuantiFast Probe-based Assays in human, mouse, rat ZCWPW1

    Additional mRNA sequence: 

    AK000919.1 AK093038.1 AK299989.1 AK300745.1 AK302108.1 AK316553.1 AL136735.1 BC002725.1 

    8 DOTS entries:

    DT.95366710  DT.100754442  DT.100018530  DT.100000784  DT.101955656  DT.303055  DT.92423945  DT.95153282 

    Selected AceView cDNA sequences (see all 44):

    BP360311 AI969074 BF222828 AK000919 BI256491 AL136735 AI650718 NM_017984 
    CD243484 AU117432 AL048981 BE395614 BI668728 AA447236 BM976699 BF896737 
    CA406045 BU682053 AK093038 BQ060983 BP346419 BF195822 AA133439 CF142457 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZCWPW1    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
    SP1:                                                                                                                                          
    SP2:                                                        -     -                                                                           
    SP3:                                                        -     -                                                                           
    SP4:        -                                                                                                                                 
    SP5:                                                              -                                                                           


    ECgene alternative splicing isoforms for ZCWPW1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZCWPW1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GAAGATGTTG
    ZCWPW1 Expression
    About this image


    ZCWPW1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 6) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Testis (Reproductive System)
             Leydig Cells Testis Interstitium
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Ovary (Reproductive System)
             XX Germ Cells Ovigerous Cord
     
     Bone (Muscoskeletal System)
             Bone Marrow
    ZCWPW1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZCWPW1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.105191
        Custom PCR Arrays for ZCWPW1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZCWPW1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZCWPW1 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zcwpw11 , 5 zinc finger, CW type with PWWP domain 11, 5 74.57(n)1
    61.22(a)1
      5 (76.71 cM)5
    3816781  NM_001005426.21  NP_001005426.21 
     1377877985 
    lizard
    (Anolis carolinensis)
    Reptilia ZCWPW16
    zinc finger, CW type with PWWP domain 1
    53(a)
    1 ↔ 1
    GL343895.1(16538-51358)


    ENSEMBL Gene Tree for ZCWPW1 (if available)
    TreeFam Gene Tree for ZCWPW1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZCWPW1 gene
    ZCWPW22  

    Find genes that share paralogs with ZCWPW1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZCWPW1 (see all 467)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1112687251,2
    C,F--99998414(+) GCTCCC/TGCTAG 2 -- int11Minor allele frequency- T:0.50WA 2
    rs1455605491,2
    C--99998431(+) TGACGC/TGCCAC 2 -- int10--------
    rs734014661,2
    C,F--99998432(+) GACGCG/ACCACA 2 -- int13Minor allele frequency- A:0.24WA CSA 122
    rs3743160951,2
    C--99998595(+) CCTGCA/GCCCCA 2 -- ut310--------
    rs117698861,2
    C,F,H--99998607(+) AGAAGG/AGAGAA 2 -- ut31 ese3 trp314Minor allele frequency- A:0.08NS EA NA 2024
    rs1996228311,2
    --99998669(+) GTCCTC/TGCCAT 3 K E mis1 ut310--------
    rs2020518141,2
    C--99998720(+) TCTCCC/TAACAT 3 R G mis1 ut311Minor allele frequency- T:0.00EU 1321
    rs1453083671,2
    C,F--99998750(+) GTCCAG/AGTCAC 3 /L syn1 ut311Minor allele frequency- A:0.01EU 1323
    rs1831117311,2
    --99998766(+) GCTTCA/GTCCTC 3 D syn1 ut310--------
    rs1880453241,2
    C--99998864(+) TGATAA/GGCCCA 4 L A syn10--------

    HapMap Linkage Disequilibrium report for ZCWPW1 (99998449 - 100026615 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for ZCWPW1:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2734888CNV Deletion23290073
    dgv1226e199CNV Deletion23128226
    dgv7398n71CNV Loss21882294
    nsv527107CNV Loss19592680
    nsv831071CNV Loss17160897
    nsv819923CNV Loss19587683
    nsv888779CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZCWPW1 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZCWPW1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2, 3 Wiemann S.... Poustka A. (Genome Res. 2001)
    2. Structural insight into the zinc finger CW domain as a histone modification reader. (PubMed id 20826339)1, 3 He F.... Muto Y. (Structure 2010)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. The CW domain, a structural module shared amongst vertebrates, vertebrate-infecting parasites and higher plants. (PubMed id 14607086)1, 3 Perry J. and Zhao Y. (Trends Biochem. Sci. 2003)
    6. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    7. The DNA sequence of human chromosome 7. (PubMed id 12853948)2 Hillier L.W.... Wilson R.K. (Nature 2003)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 55063 HGNC: 23486 AceView: ZCWPW1 Ensembl:ENSG00000078487 euGenes: HUgn55063
    ECgene: ZCWPW1 H-InvDB: ZCWPW1

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZCWPW1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZCWPW1 gene:
    Search GeneIP for patents involving ZCWPW1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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