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Aliases for ZCCHC9 Gene

Aliases for ZCCHC9 Gene

  • Zinc Finger, CCHC Domain Containing 9 2 3
  • Protein Phosphatase 1, Regulatory Subunit 41 3
  • Zinc Finger CCHC Domain-Containing Protein 9 3
  • Protein Phosphatase 1 2
  • Regulatory Subunit 41 2
  • PPP1R41 3

External Ids for ZCCHC9 Gene

Summaries for ZCCHC9 Gene

GeneCards Summary for ZCCHC9 Gene

ZCCHC9 (Zinc Finger, CCHC Domain Containing 9) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZCCHC9 Gene

Genomics for ZCCHC9 Gene

Genomic Location for ZCCHC9 Gene

Start:
81,301,583 bp from pter
End:
81,313,297 bp from pter
Size:
11,715 bases
Orientation:
Plus strand

Genomic View for ZCCHC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZCCHC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZCCHC9 Gene

Regulatory Elements for ZCCHC9 Gene

Proteins for ZCCHC9 Gene

  • Protein details for ZCCHC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N567-ZCHC9_HUMAN
    Recommended name:
    Zinc finger CCHC domain-containing protein 9
    Protein Accession:
    Q8N567
    Secondary Accessions:
    • B2RAE7
    • Q9H027

    Protein attributes for ZCCHC9 Gene

    Size:
    271 amino acids
    Molecular mass:
    30477 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZCCHC9 Gene

Proteomics data for ZCCHC9 Gene at MOPED

Post-translational modifications for ZCCHC9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZCCHC9 Gene

No data available for DME Specific Peptides for ZCCHC9 Gene

Domains for ZCCHC9 Gene

Gene Families for ZCCHC9 Gene

HGNC:
  • PPP1R :Serine/threonine phosphatases / Protein phosphatase 1, regulatory subunits
  • ZCCHC :Zinc fingers, CCHC domain containing

Protein Domains for ZCCHC9 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

ZCHC9_HUMAN
Similarity:
  • Contains 4 CCHC-type zinc fingers.:
    • Q8N567
genes like me logo Genes that share domains with ZCCHC9: view

Function for ZCCHC9 Gene

Gene Ontology (GO) - Molecular Function for ZCCHC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0008270 zinc ion binding IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with ZCCHC9: view

Phenotypes for ZCCHC9 Gene

GenomeRNAi human phenotypes for ZCCHC9:
genes like me logo Genes that share phenotypes with ZCCHC9: view

miRNA for ZCCHC9 Gene

miRTarBase miRNAs that target ZCCHC9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZCCHC9 Gene

Localization for ZCCHC9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZCCHC9 Gene COMPARTMENTS Subcellular localization image for ZCCHC9 gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1
golgi apparatus 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for ZCCHC9 Gene

Pathways for ZCCHC9 Gene

SuperPathways for ZCCHC9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZCCHC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010923 negative regulation of phosphatase activity IDA 19389623
genes like me logo Genes that share ontologies with ZCCHC9: view

No data available for Pathways by source for ZCCHC9 Gene

Transcripts for ZCCHC9 Gene

Unigene Clusters for ZCCHC9 Gene

Zinc finger, CCHC domain containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZCCHC9 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b
SP1: - - - -
SP2:
SP3: - - - - -
SP4:
SP5: - - - - -
SP6: -
SP7: - -
SP8:

Relevant External Links for ZCCHC9 Gene

GeneLoc Exon Structure for
ZCCHC9
ECgene alternative splicing isoforms for
ZCCHC9

Expression for ZCCHC9 Gene

mRNA expression in normal human tissues for ZCCHC9 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZCCHC9 Gene

SOURCE GeneReport for Unigene cluster for ZCCHC9 Gene Hs.15536

genes like me logo Genes that share expressions with ZCCHC9: view

Orthologs for ZCCHC9 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ZCCHC9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZCCHC9 36
  • 99.75 (n)
  • 99.26 (a)
ZCCHC9 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 79 (a)
OneToMany
ZCCHC9 36
  • 91.02 (n)
  • 92.25 (a)
ZCCHC9 37
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia ZCCHC9 36
  • 90.77 (n)
  • 92.99 (a)
ZCCHC9 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zcchc9 36
  • 82.9 (n)
  • 83.39 (a)
Zcchc9 16
Zcchc9 37
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 81 (a)
OneToMany
-- 37
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ZCCHC9 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zcchc9 36
  • 82.9 (n)
  • 84.13 (a)
chicken
(Gallus gallus)
Aves ZCCHC9 36
  • 67.8 (n)
  • 67.66 (a)
ZCCHC9 37
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZCCHC9 37
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.11804 36
zcchc9 36
  • 63.21 (n)
  • 61.41 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13811 36
zebrafish
(Danio rerio)
Actinopterygii zcchc9 36
  • 57.67 (n)
  • 53.17 (a)
zcchc9 37
  • 53 (a)
OneToOne
zgc56467 36
worm
(Caenorhabditis elegans)
Secernentea F07E5.5 37
  • 22 (a)
OneToOne
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC683.02c 36
  • 52.07 (n)
  • 45.75 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4394 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 48 (a)
OneToOne
Species with no ortholog for ZCCHC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ZCCHC9 Gene

ENSEMBL:
Gene Tree for ZCCHC9 (if available)
TreeFam:
Gene Tree for ZCCHC9 (if available)

Paralogs for ZCCHC9 Gene

Pseudogenes.org Pseudogenes for ZCCHC9 Gene

genes like me logo Genes that share paralogs with ZCCHC9: view

No data available for Paralogs for ZCCHC9 Gene

Variants for ZCCHC9 Gene

Sequence variations from dbSNP and Humsavar for ZCCHC9 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs766877 -- 81,311,849(-) AATGT(A/G)ATAAT intron-variant
rs924456 -- 81,310,129(-) AGTGA(A/G)AGCCA intron-variant
rs955948 -- 81,312,447(+) TATTC(A/T)TATCA intron-variant
rs1055383 -- 81,308,611(+) CCCGC(C/T)GCCCT reference, synonymous-codon, utr-variant-5-prime
rs1566432 -- 81,310,995(-) TTCTT(A/G/T)CACCT intron-variant

Relevant External Links for ZCCHC9 Gene

HapMap Linkage Disequilibrium report
ZCCHC9

No data available for Structural Variations from Database of Genomic Variants (DGV) for ZCCHC9 Gene

Disorders for ZCCHC9 Gene

No disorders were found for ZCCHC9 Gene.

No data available for UniProtKB/Swiss-Prot for ZCCHC9 Gene

Publications for ZCCHC9 Gene

  1. A nuclear localized protein ZCCHC9 is expressed in cerebral cortex and suppresses the MAPK signal pathway. (PMID: 18721783) Zhou A. … Zhang J. (J Genet Genomics 2008) 2 3 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Nucleolar proteome dynamics. (PMID: 15635413) Andersen J.S. … Mann M. (Nature 2005) 3
  4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3
  5. Docking motif-guided mapping of the interactome of protein phosphatase-1. (PMID: 19389623) Hendrickx A. … Bollen M. (Chem. Biol. 2009) 3

Products for ZCCHC9 Gene

Sources for ZCCHC9 Gene

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