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Aliases for ZCCHC2 Gene

Aliases for ZCCHC2 Gene

  • Zinc Finger CCHC-Type Containing 2 2 3
  • Zinc Finger, CCHC Domain Containing 2 3 5
  • Chromosome 18 Open Reading Frame 49 2
  • C18orf49 3
  • KIAA1744 4

External Ids for ZCCHC2 Gene

Previous HGNC Symbols for ZCCHC2 Gene

  • C18orf49

Previous GeneCards Identifiers for ZCCHC2 Gene

  • GC18P059975
  • GC18P058339
  • GC18P058340
  • GC18P058342
  • GC18P058357
  • GC18P060190
  • GC18P056901

Summaries for ZCCHC2 Gene

GeneCards Summary for ZCCHC2 Gene

ZCCHC2 (Zinc Finger CCHC-Type Containing 2) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and phosphatidylinositol binding. An important paralog of this gene is ZCCHC14.

Gene Wiki entry for ZCCHC2 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZCCHC2 Gene

Genomics for ZCCHC2 Gene

Regulatory Elements for ZCCHC2 Gene

Promoters for ZCCHC2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZCCHC2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZCCHC2 Gene

Chromosome:
18
Start:
62,523,007 bp from pter
End:
62,587,709 bp from pter
Size:
64,703 bases
Orientation:
Plus strand

Genomic View for ZCCHC2 Gene

Genes around ZCCHC2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZCCHC2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZCCHC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZCCHC2 Gene

Proteins for ZCCHC2 Gene

  • Protein details for ZCCHC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0B9-ZCHC2_HUMAN
    Recommended name:
    Zinc finger CCHC domain-containing protein 2
    Protein Accession:
    Q9C0B9
    Secondary Accessions:
    • B2RPG6
    • Q8N3S1
    • Q9NXF6

    Protein attributes for ZCCHC2 Gene

    Size:
    1178 amino acids
    Molecular mass:
    125936 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91057.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZCCHC2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZCCHC2 Gene

Proteomics data for ZCCHC2 Gene at MOPED

Post-translational modifications for ZCCHC2 Gene

  • Ubiquitination at Lys 203
  • Modification sites at PhosphoSitePlus

Other Protein References for ZCCHC2 Gene

No data available for DME Specific Peptides for ZCCHC2 Gene

Domains & Families for ZCCHC2 Gene

Gene Families for ZCCHC2 Gene

Protein Domains for ZCCHC2 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9C0B9

UniProtKB/Swiss-Prot:

ZCHC2_HUMAN :
  • Contains 1 CCHC-type zinc finger.
Similarity:
  • Contains 1 CCHC-type zinc finger.
genes like me logo Genes that share domains with ZCCHC2: view

Function for ZCCHC2 Gene

Gene Ontology (GO) - Molecular Function for ZCCHC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0035091 phosphatidylinositol binding IEA --
genes like me logo Genes that share ontologies with ZCCHC2: view
genes like me logo Genes that share phenotypes with ZCCHC2: view

Animal Model Products

miRNA for ZCCHC2 Gene

miRTarBase miRNAs that target ZCCHC2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZCCHC2 Gene

Localization for ZCCHC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZCCHC2 Gene COMPARTMENTS Subcellular localization image for ZCCHC2 gene
Compartment Confidence
nucleus 4
cytosol 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZCCHC2 Gene

Pathways & Interactions for ZCCHC2 Gene

SuperPathways for ZCCHC2 Gene

No Data Available

Interacting Proteins for ZCCHC2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000269499%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000269499 for ZCCHC2 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for ZCCHC2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZCCHC2 Gene

Drugs & Compounds for ZCCHC2 Gene

No Compound Related Data Available

Transcripts for ZCCHC2 Gene

mRNA/cDNA for ZCCHC2 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZCCHC2 Gene

Zinc finger, CCHC domain containing 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZCCHC2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16
SP1: - - - -
SP2: -
SP3:
SP4: - - - -
SP5: - -
SP6:

Relevant External Links for ZCCHC2 Gene

GeneLoc Exon Structure for
ZCCHC2
ECgene alternative splicing isoforms for
ZCCHC2

Expression for ZCCHC2 Gene

mRNA expression in normal human tissues for ZCCHC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ZCCHC2 Gene

This gene is overexpressed in Urine (40.1), Bone (14.5), and Lung (13.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZCCHC2 Gene



SOURCE GeneReport for Unigene cluster for ZCCHC2 Gene Hs.114191

genes like me logo Genes that share expression patterns with ZCCHC2: view

Protein tissue co-expression partners for ZCCHC2 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZCCHC2 Gene

Orthologs for ZCCHC2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZCCHC2 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia ZCCHC2 35
  • 89.38 (n)
  • 91.4 (a)
ZCCHC2 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zcchc2 35
  • 88.28 (n)
  • 87.57 (a)
Zcchc2 16
Zcchc2 36
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZCCHC2 35
  • 99.54 (n)
  • 99.54 (a)
ZCCHC2 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zcchc2 35
  • 87.83 (n)
  • 86.75 (a)
oppossum
(Monodelphis domestica)
Mammalia ZCCHC2 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZCCHC2 36
  • 57 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZCCHC2 35
  • 83.2 (n)
  • 82.43 (a)
chicken
(Gallus gallus)
Aves ZCCHC2 35
  • 77.51 (n)
  • 75.93 (a)
ZCCHC2 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZCCHC2 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia zcchc2 35
  • 63.7 (n)
  • 58.18 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.30746 35
zebrafish
(Danio rerio)
Actinopterygii si:ch211-273d2.3 35
  • 53.26 (n)
  • 45.37 (a)
ZCCHC2 36
  • 34 (a)
OneToOne
Species with no ortholog for ZCCHC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZCCHC2 Gene

ENSEMBL:
Gene Tree for ZCCHC2 (if available)
TreeFam:
Gene Tree for ZCCHC2 (if available)

Paralogs for ZCCHC2 Gene

Paralogs for ZCCHC2 Gene

Pseudogenes.org Pseudogenes for ZCCHC2 Gene

genes like me logo Genes that share paralogs with ZCCHC2: view

Variants for ZCCHC2 Gene

Sequence variations from dbSNP and Humsavar for ZCCHC2 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs35643152 - 62,574,902(+) CAGCA(A/G)CTTCT nc-transcript-variant, reference, missense
rs2998 -- 62,575,975(+) CATAA(C/T)CAGCT intron-variant
rs625195 -- 62,529,414(+) TTAGC(A/T)GTTGC intron-variant
rs610827 -- 62,528,565(+) ctgca(C/G)tctag intron-variant
rs659683 -- 62,525,195(+) AGAAT(C/T)ACTTA intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ZCCHC2 Gene

Variant ID Type Subtype PubMed ID
nsv828259 CNV Gain 20364138
esv26655 CNV Loss 19812545
nsv2333 CNV Loss 18451855

Variation tolerance for ZCCHC2 Gene

Residual Variation Intolerance Score: 12.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.23; 52.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZCCHC2 Gene

HapMap Linkage Disequilibrium report
ZCCHC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZCCHC2 Gene

Disorders for ZCCHC2 Gene

Relevant External Links for ZCCHC2

Genetic Association Database (GAD)
ZCCHC2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZCCHC2

No disorders were found for ZCCHC2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZCCHC2 Gene

Publications for ZCCHC2 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 67
  2. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N. … Morris A.P. (Am. J. Hum. Genet. 2012) 3
  3. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for ZCCHC2 Gene

Sources for ZCCHC2 Gene

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