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Aliases for ZCCHC17 Gene

Aliases for ZCCHC17 Gene

  • Zinc Finger CCHC-Type Containing 17 2 3
  • Zinc Finger CCHC Domain-Containing Protein 17 3 4
  • Putative S1 RNA-Binding Domain Protein 3 4
  • Zinc Finger, CCHC Domain Containing 17 3 5
  • Pnn-Interacting Nucleolar Protein 3 4
  • PNO40 3 4
  • PS1D 3 4
  • Putative S1 RNA Binding Domain Protein 3
  • Nucleolar Protein 40 3
  • PS1D Protein 4
  • HSPC251 3

External Ids for ZCCHC17 Gene

Previous GeneCards Identifiers for ZCCHC17 Gene

  • GC01P031439
  • GC01P031542
  • GC01P031769
  • GC01P029876

Summaries for ZCCHC17 Gene

GeneCards Summary for ZCCHC17 Gene

ZCCHC17 (Zinc Finger CCHC-Type Containing 17) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and poly(A) RNA binding.

Gene Wiki entry for ZCCHC17 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZCCHC17 Gene

Genomics for ZCCHC17 Gene

Regulatory Elements for ZCCHC17 Gene

Enhancers for ZCCHC17 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZCCHC17 on UCSC Golden Path with GeneCards custom track

Promoters for ZCCHC17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZCCHC17 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZCCHC17 Gene

Chromosome:
1
Start:
31,296,982 bp from pter
End:
31,365,722 bp from pter
Size:
68,741 bases
Orientation:
Plus strand

Genomic View for ZCCHC17 Gene

Genes around ZCCHC17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZCCHC17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZCCHC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZCCHC17 Gene

Proteins for ZCCHC17 Gene

  • Protein details for ZCCHC17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NP64-NO40_HUMAN
    Recommended name:
    Nucleolar protein of 40 kDa
    Protein Accession:
    Q9NP64
    Secondary Accessions:
    • B4DY38
    • D3DPN4
    • Q6PKH4
    • Q9NYG4
    • Q9P0M8

    Protein attributes for ZCCHC17 Gene

    Size:
    241 amino acids
    Molecular mass:
    27570 Da
    Quaternary structure:
    • Interacts with PNN. Associates with the 60S ribosomal subunit (By similarity).
    SequenceCaution:
    • Sequence=AAF36171.1; Type=Frameshift; Positions=48; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ZCCHC17 Gene

    Alternative splice isoforms for ZCCHC17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZCCHC17 Gene

Proteomics data for ZCCHC17 Gene at MOPED

Post-translational modifications for ZCCHC17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZCCHC17 Gene

Domains & Families for ZCCHC17 Gene

Gene Families for ZCCHC17 Gene

Protein Domains for ZCCHC17 Gene

Suggested Antigen Peptide Sequences for ZCCHC17 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NP64

UniProtKB/Swiss-Prot:

NO40_HUMAN :
  • Contains 1 S1 motif domain.
  • Contains 1 CCHC-type zinc finger.
Domain:
  • Contains 1 S1 motif domain.
Similarity:
  • Contains 1 CCHC-type zinc finger.
genes like me logo Genes that share domains with ZCCHC17: view

Function for ZCCHC17 Gene

Gene Ontology (GO) - Molecular Function for ZCCHC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with ZCCHC17: view
genes like me logo Genes that share phenotypes with ZCCHC17: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZCCHC17 Gene

Localization for ZCCHC17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZCCHC17 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZCCHC17 Gene COMPARTMENTS Subcellular localization image for ZCCHC17 gene
Compartment Confidence
cytoskeleton 5
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZCCHC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043231 intracellular membrane-bounded organelle IDA --
genes like me logo Genes that share ontologies with ZCCHC17: view

Pathways & Interactions for ZCCHC17 Gene

SuperPathways for ZCCHC17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZCCHC17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZCCHC17 Gene

Drugs & Compounds for ZCCHC17 Gene

No Compound Related Data Available

Transcripts for ZCCHC17 Gene

Unigene Clusters for ZCCHC17 Gene

Zinc finger, CCHC domain containing 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZCCHC17 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9
SP1: - - -
SP2: - -
SP3:
SP4: -
SP5: -

Relevant External Links for ZCCHC17 Gene

GeneLoc Exon Structure for
ZCCHC17
ECgene alternative splicing isoforms for
ZCCHC17

Expression for ZCCHC17 Gene

mRNA expression in normal human tissues for ZCCHC17 Gene

Protein differential expression in normal tissues from HIPED for ZCCHC17 Gene

This gene is overexpressed in Testis (14.7), Lung (13.9), Retina (11.7), and Pancreatic juice (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZCCHC17 Gene



SOURCE GeneReport for Unigene cluster for ZCCHC17 Gene Hs.524094

genes like me logo Genes that share expression patterns with ZCCHC17: view

Protein tissue co-expression partners for ZCCHC17 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZCCHC17 Gene

Orthologs for ZCCHC17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZCCHC17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZCCHC17 35
  • 94.74 (n)
  • 99.17 (a)
-- 36
  • 95 (a)
OneToMany
ZCCHC17 36
  • 99 (a)
OneToMany
dog
(Canis familiaris)
Mammalia ZCCHC17 35
  • 94.05 (n)
  • 99.59 (a)
ZCCHC17 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zcchc17 35
  • 90.58 (n)
  • 95.07 (a)
Zcchc17 16
Zcchc17 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZCCHC17 35
  • 99.59 (n)
  • 100 (a)
ZCCHC17 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zcchc17 35
  • 89.84 (n)
  • 94.62 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 75 (a)
OneToMany
-- 36
  • 71 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
chicken
(Gallus gallus)
Aves ZCCHC17 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZCCHC17 36
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.7227 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.34048 35
zebrafish
(Danio rerio)
Actinopterygii zgc65790 35
zcchc17 36
  • 59 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10823 35
Species with no ortholog for ZCCHC17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZCCHC17 Gene

ENSEMBL:
Gene Tree for ZCCHC17 (if available)
TreeFam:
Gene Tree for ZCCHC17 (if available)

Paralogs for ZCCHC17 Gene

Pseudogenes.org Pseudogenes for ZCCHC17 Gene

genes like me logo Genes that share paralogs with ZCCHC17: view

No data available for Paralogs for ZCCHC17 Gene

Variants for ZCCHC17 Gene

Sequence variations from dbSNP and Humsavar for ZCCHC17 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs756233 -- 31,326,929(-) TCAGA(C/T)CAGAG intron-variant
rs756352 -- 31,327,021(-) CAGTG(G/T)TGGCT intron-variant
rs1566961 -- 31,299,603(-) GGGAG(C/T)TATTG intron-variant
rs1566962 -- 31,299,388(-) ACCCA(A/G)AAAGG intron-variant
rs1566963 -- 31,299,359(-) TAAAC(C/T)GCTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZCCHC17 Gene

Variant ID Type Subtype PubMed ID
dgv46e1 CNV Complex 17122850
esv1665695 CNV Insertion 17803354

Variation tolerance for ZCCHC17 Gene

Residual Variation Intolerance Score: 33.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.50; 10.89% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ZCCHC17 Gene

Disorders for ZCCHC17 Gene

Relevant External Links for ZCCHC17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZCCHC17

No disorders were found for ZCCHC17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZCCHC17 Gene

Publications for ZCCHC17 Gene

  1. Molecular characterization of a novel nucleolar protein, pNO40. (PMID: 12893261) Chang W.-L. … Ouyang P. (Biochem. Biophys. Res. Commun. 2003) 2 3 4 23 67
  2. Identification of ribosomal proteins specific to higher eukaryotic organisms. (PMID: 12202495) Gueydan C. … Kruys V. (J. Biol. Chem. 2002) 2 3
  3. SR protein kinases promote splicing of nonconsensus introns. (PMID: 26167880) Lipp J.J. … Guthrie C. (Nat. Struct. Mol. Biol. 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3

Products for ZCCHC17 Gene

Sources for ZCCHC17 Gene

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