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Aliases for ZCCHC16 Gene

Aliases for ZCCHC16 Gene

  • Zinc Finger, CCHC Domain Containing 16 2 3
  • Mammalian Retrotransposon-Derived Protein 4 3 4
  • Mart4 3 4
  • Zinc Finger CCHC Domain-Containing Protein 16 3
  • Mar3 4
  • Mar4 3

External Ids for ZCCHC16 Gene

Previous GeneCards Identifiers for ZCCHC16 Gene

  • GC0XP111133
  • GC0XP111326
  • GC0XP101307

Summaries for ZCCHC16 Gene

GeneCards Summary for ZCCHC16 Gene

ZCCHC16 (Zinc Finger, CCHC Domain Containing 16) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is PEG10.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZCCHC16 Gene

Genomics for ZCCHC16 Gene

Regulatory Elements for ZCCHC16 Gene

Genomic Location for ZCCHC16 Gene

Start:
112,083,025 bp from pter
End:
112,457,245 bp from pter
Size:
374,221 bases
Orientation:
Plus strand

Genomic View for ZCCHC16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZCCHC16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZCCHC16 Gene

Proteins for ZCCHC16 Gene

  • Protein details for ZCCHC16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZR62-ZCH16_HUMAN
    Recommended name:
    Zinc finger CCHC domain-containing protein 16
    Protein Accession:
    Q6ZR62
    Secondary Accessions:
    • B2RPG1

    Protein attributes for ZCCHC16 Gene

    Size:
    310 amino acids
    Molecular mass:
    34685 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZCCHC16 Gene

Proteomics data for ZCCHC16 Gene at MOPED

Post-translational modifications for ZCCHC16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZCCHC16 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZCCHC16 Gene

Domains for ZCCHC16 Gene

Gene Families for ZCCHC16 Gene

HGNC:
  • ZCCHC :Zinc fingers, CCHC domain containing

Protein Domains for ZCCHC16 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ZCCHC16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZR62

UniProtKB/Swiss-Prot:

ZCH16_HUMAN :
  • Q6ZR62
Similarity:
  • Contains 1 CCHC-type zinc finger.
genes like me logo Genes that share domains with ZCCHC16: view

Function for ZCCHC16 Gene

Gene Ontology (GO) - Molecular Function for ZCCHC16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with ZCCHC16: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZCCHC16

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZCCHC16 Gene

Localization for ZCCHC16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZCCHC16 Gene COMPARTMENTS Subcellular localization image for ZCCHC16 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZCCHC16 Gene

Pathways for ZCCHC16 Gene

SuperPathways for ZCCHC16 Gene

No Data Available

Interacting Proteins for ZCCHC16 Gene

Gene Ontology (GO) - Biological Process for ZCCHC16 Gene

None

No data available for Pathways by source for ZCCHC16 Gene

Transcripts for ZCCHC16 Gene

mRNA/cDNA for ZCCHC16 Gene

(2) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZCCHC16 Gene

Zinc finger, CCHC domain containing 16:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZCCHC16

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZCCHC16 Gene

No ASD Table

Relevant External Links for ZCCHC16 Gene

GeneLoc Exon Structure for
ZCCHC16
ECgene alternative splicing isoforms for
ZCCHC16

Expression for ZCCHC16 Gene

mRNA expression in normal human tissues for ZCCHC16 Gene

mRNA differential expression in normal tissues according to GTEx for ZCCHC16 Gene

This gene is overexpressed in Liver (11.3) and Kidney - Cortex (6.0).

Protein differential expression in normal tissues for ZCCHC16 Gene

This gene is overexpressed in Pancreatic juice (63.0) and Plasma (6.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZCCHC16 Gene

SOURCE GeneReport for Unigene cluster for ZCCHC16 Gene Hs.368140

genes like me logo Genes that share expressions with ZCCHC16: view

Expression partners for ZCCHC16 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZCCHC16 Gene

Orthologs for ZCCHC16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZCCHC16 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia ZCCHC16 35
  • 82.17 (n)
  • 70.43 (a)
ZCCHC16 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zcchc16 35
  • 74.44 (n)
  • 60.67 (a)
Zcchc16 16
Zcchc16 36
  • 59 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZCCHC16 35
  • 98.82 (n)
  • 97.74 (a)
ZCCHC16 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zcchc16 35
  • 73.74 (n)
  • 59.6 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 25 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 22 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 22 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
Species with no ortholog for ZCCHC16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZCCHC16 Gene

ENSEMBL:
Gene Tree for ZCCHC16 (if available)
TreeFam:
Gene Tree for ZCCHC16 (if available)

Paralogs for ZCCHC16 Gene

Paralogs for ZCCHC16 Gene

genes like me logo Genes that share paralogs with ZCCHC16: view

Variants for ZCCHC16 Gene

Sequence variations from dbSNP and Humsavar for ZCCHC16 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs211875 -- 112,242,100(+) gtagc(C/T)ttgta intron-variant
rs211876 -- 112,242,237(+) gaaag(G/T)cattg intron-variant
rs766225 -- 112,338,488(+) AGGTT(A/G)ATAAC intron-variant
rs932366 -- 112,277,539(+) agtca(G/T)tgggg intron-variant
rs956725 -- 112,201,052(+) cttac(A/C)gttca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZCCHC16 Gene

Variant ID Type Subtype PubMed ID
nsv510551 CNV Loss 20534489
esv2740381 CNV Deletion 23290073
nsv516845 CNV Gain 19592680
nsv508792 CNV Insertion 20534489
nsv7041 CNV Insertion 18451855
nsv513620 CNV Insertion 21212237
esv274504 CNV Insertion 20981092
esv270032 CNV Insertion 20981092
esv2659800 CNV Deletion 23128226
dgv522n21 CNV Gain 19592680
nsv523375 CNV Gain 19592680
nsv521225 CNV Gain 19592680
nsv517690 CNV Gain+Loss 19592680

Relevant External Links for ZCCHC16 Gene

HapMap Linkage Disequilibrium report
ZCCHC16
Human Gene Mutation Database (HGMD)
ZCCHC16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZCCHC16 Gene

Disorders for ZCCHC16 Gene

Relevant External Links for ZCCHC16

Genetic Association Database (GAD)
ZCCHC16
Human Genome Epidemiology (HuGE) Navigator
ZCCHC16

No disorders were found for ZCCHC16 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for ZCCHC16 Gene

Publications for ZCCHC16 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. (PMID: 15716091) Brandt J. … Volff J.-N. (Gene 2005) 2 3
  3. A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes. (PMID: 16093683) Brandt J. … Volff J.-N. (Cytogenet. Genome Res. 2005) 2 3
  4. Genome-wide association study of biochemical traits in Korcula Island, Croatia. (PMID: 19260141) Zemunik T. … Rudan I. (Croat. Med. J. 2009) 3 48
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ZCCHC16 Gene

Sources for ZCCHC16 Gene

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