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ZCCHC14 Gene

protein-coding   GIFtS: 48
GCID: GC16M087439

Zinc Finger, CCHC Domain Containing 14

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger, CCHC Domain Containing 141 2
BDG-292 3
BDG292
Zinc Finger CCHC Domain-Containing Protein 142
KIAA05793

External Ids:    HGNC: 241341   Entrez Gene: 231742   Ensembl: ENSG000001409487   UniProtKB: Q8WYQ93   

Export aliases for ZCCHC14 gene to outside databases

Previous GC identifers: GC16M085997 GC16M073182


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZCCHC14 Gene:
ZCCHC14 (zinc finger, CCHC domain containing 14) is a protein-coding gene. GO annotations related to this gene include phosphatidylinositol binding and nucleic acid binding. An important paralog of this gene is ZCCHC2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NT_010498.16  NC_018927.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZCCHC14 gene promoter:
         AhR   Sp1   NRSF form 1   NRSF form 2   C/EBPalpha   Arnt   NRF-2   HOXA5   NF-Y   CBF(2)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZCCHC14 promoter sequence
   Search Chromatin IP Primers for ZCCHC14

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZCCHC14


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q24.2   Ensembl cytogenetic band:  16q24.2   HGNC cytogenetic band: 16q24.2

ZCCHC14 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZCCHC14 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M087439:  view genomic region     (about GC identifiers)

Start:
87,439,852 bp from pter      End:
87,525,651 bp from pter
Size:
85,800 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZCH14_HUMAN, Q8WYQ9 (See protein sequence)
Recommended Name: Zinc finger CCHC domain-containing protein 14  
Size: 949 amino acids; 100042 Da
Secondary accessions: D3DUN1 O60324 Q3MJD8 Q9UFP0
Alternative splicing: 2 isoforms:  Q8WYQ9-1   Q8WYQ9-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZCCHC14: NX_Q8WYQ9

Explore proteomics data for ZCCHC14 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZCCHC14 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_055959.1  
    ENSEMBL proteins: 
     ENSP00000268616   ENSP00000455431   ENSP00000456499  

    ZCCHC14 Human Recombinant Protein Products:

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    antibodies-online peptides for ZCCHC14

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    antibodies-online antibodies for ZCCHC14 (13 products) 

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    Cloud-Clone Corp. CLIAs for ZCCHC14
    Search eBioscience for ELISAs for ZCCHC14 
    antibodies-online kits for ZCCHC14 (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZCCHC: Zinc fingers, CCHC domain containing
    SAMD: Sterile alpha motif (SAM) domain containing

    4 InterPro protein domains:
     IPR021129 SAM_type1
     IPR001683 Phox
     IPR013761 SAM/pointed
     IPR001878 Znf_CCHC

    Graphical View of Domain Structure for InterPro Entry Q8WYQ9

    ProtoNet protein and cluster: Q8WYQ9

    2 Blocks protein domains:
    IPB001660 Sterile alpha motif SAM
    IPB001878 C2HC-type zinc-finger signature


    UniProtKB/Swiss-Prot: ZCH14_HUMAN, Q8WYQ9
    Similarity: Contains 1 CCHC-type zinc finger


    Find genes that share domains with ZCCHC14           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0008270zinc ion binding IEA--
    GO:0035091phosphatidylinositol binding IEA--
         
    Find genes that share ontologies with ZCCHC14           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZCCHC14:
     Decreased viability with pacli 

         2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Zcchc14):
     growth/size/body  skeleton 

    Find genes that share phenotypes with ZCCHC14           About GenesLikeMe

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZCCHC14

    miRNA
    Products:
        
    miRTarBase miRNAs that target ZCCHC14:
    hsa-mir-93-5p (MIRT048868), hsa-mir-1180-3p (MIRT035956), hsa-mir-15b-5p (MIRT046457), hsa-mir-142-3p (MIRT021635), hsa-mir-24-3p (MIRT030460), hsa-mir-1301-3p (MIRT036004), hsa-mir-130b-3p (MIRT020229), hsa-mir-744-5p (MIRT037672), hsa-mir-19b-3p (MIRT031153)

    Block miRNA regulation of human, mouse, rat ZCCHC14 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZCCHC14 (see all 140):
    hsa-miR-3938 hsa-miR-605 hsa-miR-138-2* hsa-miR-200b hsa-miR-130b hsa-miR-4255 hsa-miR-548y hsa-miR-4277
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZCCHC14
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZCCHC14

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZCCHC14


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus3

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZCCHC14
    Interactions:

        Search GeneGlobe Interaction Network for ZCCHC14

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for ZCCHC14 (Q8WYQ93 ENSP000002686164) via UniProtKB, MINT, STRING, and/or I2D (see all 75)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NFICP086513, ENSP000003968434I2D: score=2 STRING: ENSP00000396843
    NFIXENSP000003532194STRING: ENSP00000353219
    PRC1ENSP000003777934STRING: ENSP00000377793
    KRR1ENSP000002292144STRING: ENSP00000229214
    RPL11ENSP000003636764STRING: ENSP00000363676
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007154cell communication ----

    Find genes that share ontologies with ZCCHC14           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZCCHC14 (ZCH14)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZCCHC14 gene: 
    NM_015144.2  

    Unigene Cluster for ZCCHC14:

    Zinc finger, CCHC domain containing 14
    Hs.156231  [show with all ESTs]
    Unigene Representative Sequence: NM_015144
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000268616(uc002fjz.1) ENST00000568020(uc002fka.1) ENST00000561928(uc002fkb.3)
    ENST00000565193
    miRNA
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    Block miRNA regulation of human, mouse, rat ZCCHC14 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZCCHC14 (see all 140):
    hsa-miR-3938 hsa-miR-605 hsa-miR-138-2* hsa-miR-200b hsa-miR-130b hsa-miR-4255 hsa-miR-548y hsa-miR-4277
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ZCCHC14
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    GenScript: all cDNA clones in your preferred vector: ZCCHC14 (NM_015144)
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    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ZCCHC14
      QuantiTect SYBR Green Assays in human, mouse, rat ZCCHC14
      QuantiFast Probe-based Assays in human, mouse, rat ZCCHC14

    Additional mRNA sequence: 

    AB011151.2 AK289682.1 AL117532.1 BC028304.1 BC038944.1 BC101478.1 

    6 DOTS entries:

    DT.446815  DT.100777494  DT.86852316  DT.95161966  DT.75116692  DT.91664551 

    Selected AceView cDNA sequences (see all 205):

    BG114112 CA444765 AI017217 NM_015144 T96988 BC028304 BE326898 AL117532 
    BC038944 Z40996 H71564 BU628796 AL120272 BE048540 AI969298 AL044044 
    CA307248 CA425678 AI433890 F23324 AA429529 AA910738 AI174966 CA393596 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZCCHC14 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAACTTTATA
    ZCCHC14 Expression
    About this image

    ZCCHC14 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZCCHC14 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.156231
        Custom PCR Arrays for ZCCHC14
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZCCHC14

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZCCHC14 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zcchc141 , 5 zinc finger, CCHC domain containing 141, 5 83.91(n)1
    85.77(a)1
      8 (70.67 cM)5
    1426821  NM_080855.21  NP_543131.11 
     1215987035 
    chicken
    (Gallus gallus)
    Aves LOC1008575781 zinc finger CCHC domain-containing protein 14-like 75.51(n)
    76.05(a)
      100857578  XM_003643184.2  XP_003643232.2 
    lizard
    (Anolis carolinensis)
    Reptilia ZCCHC146
    zinc finger, CCHC domain containing 14
    69(a)
    1 ↔ 1
    GL343957.1(88040-104843)
    zebrafish
    (Danio rerio)
    Actinopterygii zcchc141 zinc finger, CCHC domain containing 14 54.35(n)
    48.36(a)
      796219  XM_001336490.4  XP_001336526.4 


    ENSEMBL Gene Tree for ZCCHC14 (if available)
    TreeFam Gene Tree for ZCCHC14 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZCCHC14 gene
    ZCCHC22  

    Find genes that share paralogs with ZCCHC14           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZCCHC14 (see all 2364)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0364924
    A breast cancer sample4--see VAR_0364922 L V mis40--------
    rs1997636701,2
    C--87439368(+) GGACAA/CTTAAA 1 -- int10--------
    rs1881868831,2
    --87439447(+) GAGGCA/GGGAGG 1 -- int10--------
    rs1817779921,2
    --87439538(+) CGGGCA/GTGGTG 1 -- int10--------
    rs133395601,2
    C--87439569(+) ctactC/Tgggag 1 -- int10--------
    rs1873063141,2
    --87439615(+) GGCGTC/GAGCTG 1 -- int10--------
    rs80628131,2
    C--87439626(+) agatcA/Gtgtca 1 -- int10--------
    rs794565461,2
    C,F--87439634(+) TCACCA/GCATTC 1 -- int12Minor allele frequency- G:0.03WA NA 238
    rs2006690111,2
    C--87439674(-) TTTTTC/TTNNNN 1 -- int10--------
    rs1464509591,2
    C--87439753(+) AAATGC/TGAGAG 1 -- int10--------

    HapMap Linkage Disequilibrium report for ZCCHC14 (87439852 - 87525651 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for ZCCHC14 (see all 18):    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv2950n71CNV Loss21882294
    nsv907162CNV Loss21882294
    nsv907160CNV Loss21882294
    esv1007865CNV Loss20482838
    nsv907153CNV Loss21882294
    nsv907161CNV Loss21882294
    nsv907156CNV Loss21882294
    esv33545CNV Gain17666407
    dgv501n67CNV Gain20364138
    dgv499n67CNV Gain20364138

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZCCHC14
    DNA2.0 Custom Variant and Variant Library Synthesis for ZCCHC14

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with ZCCHC14           About GenesLikeMe

    Genetic Association Database (GAD): ZCCHC14

    Export disorders for ZCCHC14 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZCCHC14 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with ZCCHC14)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581)1, 2, 3 Nagase T....Ohara O. (DNA Res. 1998)
    2. A mega-analysis of genome-wide association studies for major depressive disorder. (PubMed id 22472876)1, 4  ....Sullivan P.F. (Mol. Psychiatry 2013)
    3. Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)1, 2 Nakajima D.... Nagase T. (DNA Res. 2002)
    4. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PubMed id 23824909)1 Chen Y....Ge F. (amp 2013)
    5. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    6. A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication. (PubMed id 19460752)1 Yeung M.L....Jeang K.T. (J. Biol. Chem. 2009)
    7. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
    8. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (BMC Genomics 2007)
    9. The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)2 Sjoeblom T.... Velculescu V.E. (Science 2006)
    10. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 23174 HGNC: 24134 AceView: ZCCHC14 Ensembl:ENSG00000140948 euGenes: HUgn23174
    ECgene: ZCCHC14 H-InvDB: ZCCHC14

    (According to HUGE)
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    HUGE: KIAA0579

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZCCHC14 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZCCHC14 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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