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ZCCHC12 Gene

protein-coding GIFtS: 50

GC0XP117841

zinc finger, CCHC domain containing 12
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
2810028A01Rik ^²
FLJ16123 ^¹, ²
OTTHUMP00000023892 ^²
SIZN ^¹, ²
SIZN1 ^¹, ², ³, ⁵

Descriptions
Smad-interacting zinc finger protein 1 ^³
zinc finger, CCHC domain containing 12 ^²

External Ids
HGNC: 27273¹
Entrez Gene: 170261²
UniProtKB: Q6PEW1³
Ensembl: ENSG00000174460⁷

Search outside databases for aliases for ZCCHC12 gene

Previous GC identifer: GC0XP117739

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZCH12_HUMAN, Q6PEW1

Function: Transcriptional coactivator in the bone morphogenetic protein (BMP)-signaling pathway. It

positively modulates BMP signaling by interacting with SMAD1 and associating with CBP in the

transcription complex. It contributes to the BMP-induced enhancement of

cholinergic-neuron-specific gene expression (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the ZCCHC12 gene

Entrez Gene cytogenetic band: Xq24 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq24

ZCCHC12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP117841: (about GC identifiers)

Start:	117,841,774 bp from pter
End:	117,844,959 bp from pter
Size:	3,186 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ZCH12_HUMAN, Q6PEW1 (See protein sequence)

Recommended Name: Zinc finger CCHC domain-containing protein 12

Size: 402 amino acids; 45369 Da

Subunit: Interacts with SMAD1 and CREB-binding protein (CBP). Forms a protein-DNA complex through

its association with SMAD1 (By similarity)

Secondary accessions: Q6PID5 Q8N1C1

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_776159.1

ENSEMBL proteins:

ENSP00000308921

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (ZCCHC12)
	Human Recombinant Proteins from Abnova (ZCCHC12)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

Antibodies for ZCCHC12:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for ZCCHC12
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (ZCCHC12), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (ZCCHC12)
	Novus Biologicals Antibody for ZCCHC12

Assays for ZCCHC12:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q6PEW1

ProtoNet protein and cluster: Q6PEW1

1 Blocks protein family: IPB001878 C2HC-type zinc-finger signature

UniProtKB/Swiss-Prot: ZCH12_HUMAN, Q6PEW1

Similarity: Contains 1 CCHC-type zinc finger

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZCCHC12)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ZCCHC12)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_173798

Applied Biosystems Silencer® siRNAs for ZCCHC12

Sigma-Aldrich siRNA for ZCCHC12

Sigma-Aldrich shRNA for ZCCHC12

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for ZCCHC12
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_173798
Myc/DDK tagged cDNA clone in CMV expression vector: NM_173798
untagged cDNA clone in CMV expression vector: NM_173798

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_173798

UniProtKB/Swiss-Prot: ZCH12_HUMAN, Q6PEW1

Function: Transcriptional coactivator in the bone morphogenetic protein (BMP)-signaling pathway. It

positively modulates BMP signaling by interacting with SMAD1 and associating with CBP in the

transcription complex. It contributes to the BMP-induced enhancement of

cholinergic-neuron-specific gene expression (By similarity)

1 MGI phenotypic allele for Zcchc12 (no phenotypes)

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003676	nucleic acid binding	IEA	--
GO:0008270	zinc ion binding	IEA	--
GO:0046872	metal ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006350	transcription	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ZCCHC12

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZCCHC12)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ZCCHC12)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_173798

Sigma-Aldrich siRNA for ZCCHC12

Sigma-Aldrich shRNA for ZCCHC12

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_173798

REFSEQ mRNAs for ZCCHC12 gene:

NM_173798.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_173798

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_173798
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_173798
                                 untagged cDNA clone in CMV expression vector: NM_173798

Additional cDNA sequence:

AK122676.1 BC018066.1 BC031241.1 BC033958.2 BC036572.2 BC057841.1 CR594993.1

2 DOTS entries:

DT.101981697 DT.100831193

24/63 AceView cDNA sequences (see all 63 ):

CR594993 CD106923 Z43767 BC031241 T08146 NM_173798 AA350584 AW002115

AK122676 AI263334 BI598817 BG700477 BX453739 BI551934 AW572373 M78481

BG708033 BI666934 BC057841 BI600056 AA350585 BX422751 BI667999 BC033958

highest scoring ESTs for ZCCHC12:

AA350585 AI049548 AI263334 AI923298 AI955956 AK122676 AL536985 AL602896 AL703272 AV725825

Unigene Cluster for ZCCHC12:

Zinc finger, CCHC domain containing 12

Hs.21417 [show with all ESTs]

Unigene Representative Sequence: BC036572

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000310164

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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ZCCHC12 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for ZCCHC12

¹ / ² / ³

3 probe-sets matching ZCCHC12 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
63480_at²^{, 3}	U95-C	1	1.00	1.00	1.00	1.00	R38505	0.80	1.00	0.91	1
228715_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AV725825	0.80	1.00	0.91	1
228715_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks ZCCHC12 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AATTAATCCA

SOURCE GeneReport for Unigene cluster: Hs.21417

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ZCCHC12 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	ZCCHC12¹	--	zinc finger, CCHC domain containing 12	85.92(n) 84.75(a)	492090 XM_549212.2 XP_549212.2
cow (Bos taurus)	ZCCHC12¹	--	zinc finger, CCHC domain containing 12	85.61(n) 81.57(a)	540006 NM_001076197.1 NP_001069665.1
rat (Rattus norvegicus)	Zcchc12¹	--	zinc finger, CCHC domain containing 12	81.19(n) 74.81(a)	313436 NM_001014065.1 NP_001014087.1
mouse (Mus musculus)	Zcchc12^{1, 5}	X⁵	zinc finger, CCHC domain containing 12^{1, 5}	81.83(n)¹ 75(a)¹	72693¹ NM_028325.2¹ NP_082601.1¹ AK012833⁵ AL512597⁵ (see all 11)
zebrafish (Danio rerio)	LOC100148669¹	--	similar to zinc finger, CCHC domain containing 12	40.33(n) 28.16(a)	100148669 XM_001919933.1 XP_001919968.1

About this table Species with no ortholog for ZCCHC12

ENSEMBL Gene Tree for ZCCHC12

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ZCCHC12 gene

PNMA6A² PNMA5² PNMA1² PNMA2² PNMA3² MOAP1² ENSG00000204851² ZCCHC18²

PNMAL1² PNMA6B²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/21 NCBI SNPs in ZCCHC12 are shown (see all 21 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 29)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs35356061^1,2	C,F	117843254(-)	`GACACG/ATGCAA`	1	C/R	mis¹		5		NA EU EA WA	389
--	rs12853136^1,2	A,H	117841044(+)	`attctC/Ttagcc`	1	--	ng5¹		4		EU EA WA	418
--	rs4133590^1,2	A,C	117842378(-)	`ACCAGC/TTCTGC`	1	--	ut5¹		0	--	--	--	--
	rs11798871^1,2	H	117841321(+)	`GTTGAG/AAGCCT`	1	--	ng5¹		4		EU EA WA	420
	rs11798494^1,2	H	117841249(+)	`cagaaG/Aactgc`	1	--	ng5¹		4		EU EA WA	414
	rs261673^1,2	A,C,F,H	117842202(-)	`TCGCCT/CCTCCT`	1	--	int¹ trp³		4		EU EA WA	416
	rs261672^1,2	A,C	117842210(-)	`GCTACC/TCCTCG`	1	--	int¹		0	--	--	--	--
--	rs12851711^1,2	--	117841133(+)	`gtagaA/Gacggg`	1	--	ng5¹		0	--	--	--	--
--	rs417223^1,2	--	117840933(-)	`aaaaaA/Gaaaaa`	1	--	ng5¹ trp³		0	--	--	--	--
--	rs41312763^1,2	--	117845131(+)	`CCTTAC/TCACAA`	1	--	ng3¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for ZCCHC12 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300701

Human Gene Mutation Database: ZCCHC12

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

6 PubMed articles for ZCCHC12 gene:

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{2, 3} Strausberg R.L....Marra M.A. (2002)
Sizn1 is a novel protein that functions as a transcriptional coactivator of bone morphogenic protein signaling. (PubMed id 18160706)³ Cho G....Golden J.A. (2008)
Evidence that SIZN1 is a candidate X-linked mental retardation gene. (PubMed id 18798319)³ Cho G....Srivastava A.K. (2008)
Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)³ Rual J.F....Vidal M. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 170261	HGNC: 27273	AceView: ZCCHC12	Ensembl:ENSG00000174460	euGenes: HUgn170261
ECgene: ZCCHC12	H-InvDB: ZCCHC12

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for ZCCHC12
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for ZCCHC12:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for ZCCHC12-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for ZCCHC12		Antibodies for ZCCHC12
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for ZCCHC12		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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	Custom Service for Rabbit Pab from Full-length Protein

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ZCCHC12 Gene

protein-coding GIFtS: 50

Aliases &
Descriptions
for ZCCHC12

Summaries
for ZCCHC12

Genomic Location
for ZCCHC12

Proteins
for ZCCHC12

Protein Domains/
Families
for ZCCHC12

Gene Function
for ZCCHC12

Pathways & Interactions
for ZCCHC12

Drugs & Compounds
for ZCCHC12

Transcripts
for ZCCHC12

Expression
for ZCCHC12

Orthologs
for ZCCHC12

Paralogs
for ZCCHC12

SNPs/Variants
for ZCCHC12

Disorders & Mutations
for ZCCHC12

Medical News
for ZCCHC12

Publications
for ZCCHC12

Search for ZCCHC12

Genome Databases showing ZCCHC12

Other Databases showing ZCCHC12

Specialized Databases showing ZCCHC12

Licensable Technologies
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Services
for ZCCHC12

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

ZCCHC12 Gene

protein-coding GIFtS: 50

Aliases & Descriptionsfor ZCCHC12

Summariesfor ZCCHC12

Genomic Locationfor ZCCHC12

Proteinsfor ZCCHC12

Protein Domains/Familiesfor ZCCHC12

Gene Functionfor ZCCHC12

Pathways & Interactionsfor ZCCHC12

Drugs & Compoundsfor ZCCHC12

Transcriptsfor ZCCHC12

Expression for ZCCHC12

Orthologsfor ZCCHC12

Paralogsfor ZCCHC12

SNPs/Variantsfor ZCCHC12

Disorders & Mutationsfor ZCCHC12

Medical Newsfor ZCCHC12

Publicationsfor ZCCHC12

Search for ZCCHC12

Genome Databases showing ZCCHC12

Other Databases showing ZCCHC12

Specialized Databases showing ZCCHC12

Licensable Technologiesfor ZCCHC12

Servicesfor ZCCHC12

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for ZCCHC12

Summaries
for ZCCHC12

Genomic Location
for ZCCHC12

Proteins
for ZCCHC12

Protein Domains/
Families
for ZCCHC12

Gene Function
for ZCCHC12

Pathways & Interactions
for ZCCHC12

Drugs & Compounds
for ZCCHC12

Transcripts
for ZCCHC12

Expression
for ZCCHC12

Orthologs
for ZCCHC12

Paralogs
for ZCCHC12

SNPs/Variants
for ZCCHC12

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for ZCCHC12

Medical News
for ZCCHC12

Publications
for ZCCHC12

Licensable Technologies
for ZCCHC12

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