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Aliases & Descriptions for ZC3HC1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 1110054L24Rik 2 | | HSPC216 2 | | NIPA 1, 2, 3 | | hNIPA 3 |
| | | Descriptions |
|---|
| Nuclear-interacting partner of anaplastic lymphoma kinase 3 | | Zinc finger C3HC-type protein 1 3 | | hematopoietic stem/progenitor cell protein 216 2 | nuclear interacting partner of anaplastic lymphoma kinase (ALK) 2 | | nuclear interaction partner of ALK 2 | | zinc finger, C3HC type 1 2 | | zinc finger, C3HC-type containing 1 2 |
|
| | Search outside databases for aliases for ZC3HC1 genePrevious GC identifer: GC07M129253 |
Summaries for ZC3HC1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0Function: Essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry. May have an antiapoptotic role in NPM-ALK-mediated signaling eventsGene Wiki entry for ZC3HC1 |
Genomic Location for ZC3HC1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ZC3HC1 gene 
Entrez Gene cytogenetic band: 7q32.2 Ensembl cytogenetic band: 7q32.2 HGNC cytogenetic band: 7q32.2ZC3HC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M129445:
(about GC identifiers)
Start:
|
129,445,362 bp from pter |
End:
|
129,478,469 bp from pter |
Size:
|
33,108 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 129,042,758-129,076,662 |
RefSeq DNA sequence:- NC_000007.12 NT_007933.14 NT_079596.2
| Proteins for ZC3HC1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0 (See
protein sequence)Recommended Name: Nuclear-interacting partner of ALK Size: 502 amino acids; 55262 Da
Subunit: Interacts with the NPM-ALK fusion protein in a tyrosine phosphorylation-dependent manner. Interacts with SKP1. Component of a SCF(NIPA) E3 complex with SKP1A, RBX1 and CUL1 when not phosphorylated on Ser-354. Interacts with CCNB1
Subcellular location: Nucleus
Developmental stage: Weakly expressed in G0/G1 phases, abundant during S and G2/M phases, and strongly decreases thereafter
Caution: Reported to contain a F-box domain (PubMed:16009132). Such domain is however not predicted by any detection method
Sequence caution: Sequence=AAF36136.1; Type=Frameshift; Positions=93, 187, 220; Sequence=AAS07546.1; Type=Erroneous gene model prediction; Sequence=AAS07547.1; Type=Erroneous gene model prediction;
Secondary accessions: A6NH66 Q75MF3 Q75MF4 Q8N330 Q96F75 Q9HA34 Q9NVX4 Q9P0R0Alternative splicing: 3 isoforms: Q86WB0-1 Q86WB0-2 Q86WB0-3 Post-translational modifications:
Phosphorylated. Phosphorylated on Ser residues at G2/M phase, but not during S and G0 phases. May also be weakly phosphorylated on Tyr residues. Ser-354 phosphorylation, a major site during the course of cell-cycle-dedendent phosphorylation, results in its dissociation from the SCF(NIPA) complex, thereby preventing CCNB1 degradation leading to mitotic entry1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_057562.3
ENSEMBL proteins: ENSP00000353933 ENSP00000351052 ENSP00000309301
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- | About this table
Antibodies for ZC3HC1: Assays for ZC3HC1: | Protein
Domains/ Families for ZC3HC1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q86WB0
ProtoNet protein and cluster: Q86WB0 1 Blocks protein family: IPB012935 Zinc finger
UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0Domain: The F-box-like region is required for the interaction with SKP1ASimilarity: Contains 1 C3HC-type zinc finger | Gene Function for ZC3HC1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016478
Applied Biosystems Silencer® siRNAs for ZC3HC1
Sigma-Aldrich siRNA for ZC3HC1  Sigma-Aldrich shRNA Panels and shRNA for ZC3HC1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016478                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016478                                  untagged cDNA clone in CMV expression vector: NM_016478 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_016478
UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0Function: Essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry. May have an antiapoptotic role in NPM-ALK-mediated signaling events3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ZC3HC1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0Pathway: Protein modification; protein ubiquitination4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ZC3HC1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ZC3HC1
|
Transcripts for ZC3HC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016478
Sigma-Aldrich siRNA for ZC3HC1  Sigma-Aldrich shRNA Panels and shRNA for ZC3HC1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_016478 REFSEQ mRNAs for ZC3HC1 gene: NM_016478.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_016478               OriGene GFP tagged cDNA clone in CMV expression vector: NM_016478                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016478                                  untagged cDNA clone in CMV expression vector: NM_016478  Additional cDNA sequence: AF151050.1 AJ537494.1 AK001317.1 AK022373.1 BC000190.1 BC011551.1 BC028917.1 CR603577.1 CR607048.1 CR617545.1 CR618908.1 11 DOTS entries: DT.316743 DT.100774889 DT.100804029 DT.40108337 DT.75177243 DT.91787394 DT.121039330 DT.95193685 DT.100738541 DT.92435144 DT.121039322 24/211 AceView cDNA sequences (see all 211
):BM843455 BU844456 CR603577 BQ651241 AJ537494 BQ653235 BC000190 CR607048 BX384219 BM719894 BI224212 BM795545 CR617545 BX333474 CR618908 BM823327 BM013594 BM795918 BQ645081 BU194234 CB137494 BU540711 BQ962845 BM843186
highest scoring ESTs for ZC3HC1:AA039602 AA070015 AF151050 AI828094 AJ537494 AK001317 AK022373 AU122259 AW247353 BC000190 Unigene Cluster for ZC3HC1: Zinc finger, C3HC-type containing 1 Hs.194157 [show with all ESTs]Unigene Representative Sequence: NM_016478
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for ZC3HC1 (see all 9
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12a | · | 12b | ^ | 13a | · | 13b | ^ | 14a | · | 14b | ^ | 15 | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ZC3HC1
3 Ensembl transcripts including schematic representations: ENST00000360708
ENST00000358303
ENST00000311873
|
Expression for ZC3HC1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ZC3HC1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ZC3HC1
1 / 2 / 3 3 probe-sets matching ZC3HC1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTTCTGTTAA
SOURCE GeneReport for Unigene cluster: Hs.194157 UniProtKB/Swiss-Prot: NIPA_HUMAN, Q86WB0Tissue specificity: Widely expressed. Highly expressed in heart, skeletal muscle and testis. Expressed in brain, placenta, lung, kidney, liver, pancreas, spleen, thymus, prostate, ovary small intestine and colon. Weakly or not expressed in leukocytes |
Orthologs for ZC3HC1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ZC3HC1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ZC3HC1
ENSEMBL Gene Tree for ZC3HC1 | Paralogs for ZC3HC1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for ZC3HC1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ZC3HC1 (up to first 250kb)
|
Disorders & Mutations for ZC3HC1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News for ZC3HC1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ZC3HC1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/19 PubMed articles for ZC3HC1 gene (see all 19
):- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)2, 3, 4 Zhang Q.H....Chen Z. (2000)
- Identification and characterization of a nuclear interacting partner of anaplastic lymphoma kinase (NIPA). (PubMed id 12748172)1, 3, 4 Ouyang T.... Duyster J. (2003)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- NIPA defines an SCF-type mammalian E3 ligase that regulates mitotic entry. (PubMed id 16009132)3, 4 Bassermann F.... Duyster J. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)3, 4 Hillier L.W.... Wilson R.K. (2003)
- Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)4 Cantin G.T....Yates J.R. III (2008)
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)4 Daub H.... Mann M. (2008)
|
Search for ZC3HC1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ZC3HC1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ZC3HC1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZC3HC1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ZC3HC1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ZC3HC1:

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| Antibodies & Assays for ZC3HC1  (NIPA) |
| | Recombinant Proteins (NIPA) | | Antibodies (NIPA) |
| | | Search Tocris compounds for ZC3HC1 |
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Incremental update: 13 Oct 2009
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