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Aliases for ZC3HAV1L Gene

Aliases for ZC3HAV1L Gene

  • Zinc Finger CCCH-Type, Antiviral 1-Like 2 3
  • C7orf39 3 4
  • Zinc Finger CCCH-Type Antiviral Protein 1-Like 3
  • Chromosome 7 Open Reading Frame 39 2

External Ids for ZC3HAV1L Gene

Previous Symbols for ZC3HAV1L Gene

  • C7orf39

Summaries for ZC3HAV1L Gene

GeneCards Summary for ZC3HAV1L Gene

ZC3HAV1L (Zinc Finger CCCH-Type, Antiviral 1-Like) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3HAV1L Gene

Genomics for ZC3HAV1L Gene

Genomic Location for ZC3HAV1L Gene

Start:
139,025,706 bp from pter
End:
139,036,029 bp from pter
Size:
10,324 bases
Orientation:
Minus strand

Genomic View for ZC3HAV1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZC3HAV1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3HAV1L Gene

Regulatory Elements for ZC3HAV1L Gene

Proteins for ZC3HAV1L Gene

  • Protein details for ZC3HAV1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96H79-ZCCHL_HUMAN
    Recommended name:
    Zinc finger CCCH-type antiviral protein 1-like
    Protein Accession:
    Q96H79
    Secondary Accessions:
    • Q8WUD9

    Protein attributes for ZC3HAV1L Gene

    Size:
    300 amino acids
    Molecular mass:
    32962 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZC3HAV1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZC3HAV1L Gene

Proteomics data for ZC3HAV1L Gene at MOPED

Post-translational modifications for ZC3HAV1L Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys12, Lys141, and Lys174

Other Protein References for ZC3HAV1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZC3HAV1L Gene

Domains for ZC3HAV1L Gene

Protein Domains for ZC3HAV1L Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with ZC3HAV1L: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ZC3HAV1L Gene

Function for ZC3HAV1L Gene

Phenotypes for ZC3HAV1L Gene

genes like me logo Genes that share phenotypes with ZC3HAV1L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZC3HAV1L Gene

Localization for ZC3HAV1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZC3HAV1L Gene COMPARTMENTS Subcellular localization image for ZC3HAV1L gene
Compartment Confidence
extracellular 3
cytosol 1
endoplasmic reticulum 1
lysosome 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for ZC3HAV1L Gene

Pathways for ZC3HAV1L Gene

SuperPathways for ZC3HAV1L Gene

No Data Available

Interacting Proteins for ZC3HAV1L Gene

Gene Ontology (GO) - Biological Process for ZC3HAV1L Gene

None

No data available for Pathways by source for ZC3HAV1L Gene

Transcripts for ZC3HAV1L Gene

mRNA/cDNA for ZC3HAV1L Gene

Unigene Clusters for ZC3HAV1L Gene

Zinc finger CCCH-type, antiviral 1-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3HAV1L Gene

No ASD Table

Relevant External Links for ZC3HAV1L Gene

GeneLoc Exon Structure for
ZC3HAV1L
ECgene alternative splicing isoforms for
ZC3HAV1L

Expression for ZC3HAV1L Gene

mRNA expression in normal human tissues for ZC3HAV1L Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ZC3HAV1L Gene

SOURCE GeneReport for Unigene cluster for ZC3HAV1L Gene Hs.512833

genes like me logo Genes that share expressions with ZC3HAV1L: view

Orthologs for ZC3HAV1L Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZC3HAV1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZC3HAV1L 36
  • 99.44 (n)
  • 99.33 (a)
ZC3HAV1L 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZC3HAV1L 36
  • 85.55 (n)
  • 83.28 (a)
ZC3HAV1L 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZC3HAV1L 36
  • 86.62 (n)
  • 87.9 (a)
ZC3HAV1L 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zc3hav1l 36
  • 82.64 (n)
  • 76.55 (a)
Zc3hav1l 16
Zc3hav1l 37
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZC3HAV1L 37
  • 48 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zc3hav1l 36
  • 82.19 (n)
  • 78.42 (a)
Species with no ortholog for ZC3HAV1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZC3HAV1L Gene

ENSEMBL:
Gene Tree for ZC3HAV1L (if available)
TreeFam:
Gene Tree for ZC3HAV1L (if available)

Paralogs for ZC3HAV1L Gene

Selected SIMAP similar genes for ZC3HAV1L Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZC3HAV1L: view

No data available for Paralogs for ZC3HAV1L Gene

Variants for ZC3HAV1L Gene

Sequence variations from dbSNP and Humsavar for ZC3HAV1L Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs546700 -- 139,031,485(+) ggagg(A/C)tgagg intron-variant
rs635770 -- 139,030,558(-) agcca(C/T)cacac intron-variant
rs1394491 -- 139,037,358(-) GCACT(C/G)AGGAG upstream-variant-2KB
rs2279860 -- 139,036,275(-) CAGGC(C/T)TCGCC upstream-variant-2KB
rs2656301 -- 139,036,248(-) CGGAG(C/G)AGACG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZC3HAV1L Gene

Variant ID Type Subtype PubMed ID
esv2735212 CNV Deletion 23290073
nsv831155 CNV Loss 17160897

Relevant External Links for ZC3HAV1L Gene

HapMap Linkage Disequilibrium report
ZC3HAV1L

Disorders for ZC3HAV1L Gene

No disorders were found for ZC3HAV1L Gene.

No data available for UniProtKB/Swiss-Prot for ZC3HAV1L Gene

Publications for ZC3HAV1L Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PMID: 19953087) Persaud A. … Rotin D. (Mol. Syst. Biol. 2009) 3
  3. The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1. (PMID: 20811636) Giannone R.J. … Liu Y. (PLoS ONE 2010) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate. (PMID: 21628590) Emanuele M.J. … Elledge S.J. (Proc. Natl. Acad. Sci. U.S.A. 2011) 3

Products for ZC3HAV1L Gene

Sources for ZC3HAV1L Gene

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