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Aliases & Descriptions for ZC3HAV1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686F2052 2 DKFZp686H1869 2 DKFZp686O19171 2 FLB6421 1 , 2 , 5 FLJ13288 1 , 2 , 5 MGC48898 1 , 2 ZAP 1 , 2 , 3 , 5 ZC3H2 1 , 2 ZC3HDC2 1 , 2 , 3
Descriptions CCCH-type zinc finger antiviral protein 2 Zinc finger CCCH domain-containing protein 2 3 Zinc finger antiviral protein 2 , 3 zinc finger CCCH type, antiviral 1 2 zinc finger CCCH-type, antiviral 1 2
Search outside databases for aliases for ZC3HAV1 genePrevious GC identifers: GC07M138142 GC07M138185
Summaries for ZC3HAV1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ZC3HAV1 : This gene encodes a CCCH-type zinc finger protein that is thought to prevent infection byretroviruses. Studies of the rat homolog indicate that the protein may primarily function toinhibit viral gene expression and induce an innate immunity to viral infection. Alternativesplicing occurs at this locus and two variants, each encoding distinct isoforms, are described.[provided by RefSeq] UniProtKB/Swiss-Prot: ZCCHV_HUMAN, Q7Z2W4 Function : Induces an innate immunity to viral infections by preventing the accumulation of viralRNAs in the cytoplasm. Seems to recruit the RNA processing exosome to degrade the target RNAs.Inhibits alphavirus and filovirus replication (By similarity)
Gene Wiki entry for ZC3HAV1
Genomic Location for ZC3HAV1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ZC3HAV1 gene Entrez Gene cytogenetic band: 7q34 Ensembl cytogenetic band: 7q34 HGNC cytogenetic band: 7q34 ZC3HAV1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M138378:
(about GC identifiers )
Start:
138,378,806 bp from pter
End:
138,445,005 bp from pter
Size:
66,200 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 138,072,485-138,139,025
RefSeq DNA sequence: NC_000007.12 NT_007933.14 NT_079596.2 Proteins for ZC3HAV1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ZCCHV_HUMAN, Q7Z2W4 (See
protein sequence )Recommended Name: Zinc finger CCCH-type antiviral protein 1 Size : 902 amino acids; 101431 Da
Subunit : Interacts with EXOSC5 (By similarity)
Subcellular location : Cytoplasm. Nucleus. Note=Localizes in the cytoplasm at steady state, butshuttles between nucleus and cytoplasm in a XPO1-dependent manner (By similarity)
Secondary accessions : A4D1R2 A4D1S4 Q8IW57 Q8TAJ3 Q96N79 Q9H8R9 Q9P0Y7Alternative splicing : 5 isoforms : Q7Z2W4-1 Q7Z2W4-2 Q7Z2W4-3 Q7Z2W4-4 Q7Z2W4-5
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_064504.2 NP_078901.3 ENSEMBL proteins: ENSP00000242351 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ZC3HAV1: Assays for ZC3HAV1:
Protein
Domains/ Families for ZC3HAV1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q7Z2W4 ProtoNet protein and cluster: Q7Z2W4
1 Blocks protein family : IPB000571 Zn-finger UniProtKB/Swiss-Prot: ZCCHV_HUMAN, Q7Z2W4 Domain : The second and fourth zinc fingers are involved in binding to specific viral RNAs (Bysimilarity) Similarity : Contains 4 C3H1-type zinc fingersSimilarity : Contains 1 PARP catalytic domainSimilarity : Contains 1 WWE domain
Gene Function for ZC3HAV1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_024625 Applied Biosystems Silencer ® siRNAs for ZC3HAV1 Sigma-Aldrich siRNA and siRNA Panels for ZC3HAV1 Sigma-Aldrich shRNA for ZC3HAV1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_020119                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_020119                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK055851  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020119 UniProtKB/Swiss-Prot: ZCCHV_HUMAN, Q7Z2W4 Function : Induces an innate immunity to viral infections by preventing the accumulation of viralRNAs in the cytoplasm. Seems to recruit the RNA processing exosome to degrade the target RNAs.Inhibits alphavirus and filovirus replication (By similarity)
4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ZC3HAV1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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--1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0009615 response to virus
IEA --
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Drugs & Compounds for ZC3HAV1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ZC3HAV1 1 Novoseek chemical compound relationship for ZC3HAV1 gene
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Transcripts for ZC3HAV1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_024625 Sigma-Aldrich siRNA and siRNA Panels for ZC3HAV1 Sigma-Aldrich shRNA for ZC3HAV1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_020119 NM_024625
REFSEQ mRNAs for ZC3HAV1 gene (2 alternative transcripts): NM_020119.3 NM_024625.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020119 NM_024625
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_020119                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_020119                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK055851  
Additional cDNA sequence: AF138863.1 AK023350.1 AK098308.1 AK292811.1 BC002935.1 BC025308.1 BC027462.1 BC033105.1 BC038809.1 BC040956.1 BX571742.1 BX647138.1 BX647974.1
12 DOTS entries : DT.315421 DT.40309997 DT.101973731 DT.100710403 DT.100881520 DT.100750254 DT.121104934 DT.454847 DT.91909295 DT.100881524 DT.121104971 DT.121104945
24/286 AceView cDNA sequences (see all 286
):CA389596 AA287643 BU860445 AA843414 AI094650 BM794513 AA446181 AI768946 AI418435 AI039328 AW055170 AI032678 AI697377 BP870955 BM552559 AI092223 AI124768 BU621923 BX504426 BF026337 AA477574 AI383902 BQ129976 BF475435
highest scoring ESTs for ZC3HAV1 :AA704533 AA852983 AI133727 AI635522 BC025308 BC033105 BC040956 BE782209 BM016653 BM541963
Unigene Cluster for ZC3HAV1: Zinc finger CCCH-type, antiviral 1 Hs.133512 [show with all ESTs ] Unigene Representative Sequence: NM_020119 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000242351
Expression for ZC3HAV1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ZC3HAV1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ZC3HAV1 1 / 2 / 3
11 probe-sets matching ZC3HAV1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.133512 Expression variation in blood from EXPOLDB for ZC3HAV1
Orthologs for ZC3HAV1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ZC3HAV1 gene from 5 species
About this table Species with no ortholog for ZC3HAV1 ENSEMBL Gene Tree for ZC3HAV1 Paralogs for ZC3HAV1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ZC3HAV1 gene PARP11 2 PARP12 2 TIPARP 2
SNPs/Variants for ZC3HAV1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ZC3HAV1 (up to first 250kb)
Disorders & Mutations for ZC3HAV1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 607312 2 Novoseek disease relationships for ZC3HAV1 gene
About this table
Medical News for ZC3HAV1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ZC3HAV1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/40 PubMed articles for ZC3HAV1 gene (see all 40
): Inhibition of retroviral RNA production by ZAP, a CCCH-type zinc finger protein. (PubMed id 12215647) 1, 2, 3 Gao G....Goff S.P. (2002) Identification and characterization of human TIPARP gene within the CCNL amplicon at human chromosome 3q25.31. (PubMed id 12851707) 1, 2, 3 Katoh M. and Katoh M. (2003) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004) Human chromosome 7: DNA sequence and biology. (PubMed id 12690205) 3, 4 Scherer S.W....Tsui L.C. (2003) Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein. (PubMed id 18225958) 1, 3 Kerns J.A....Malik H.S. (2008) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 4 Cantin G.T....Yates J.R. III (2008)
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Genome Databases showing ZC3HAV1
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ZC3HAV1
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Specialized Databases showing ZC3HAV1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ZC3HAV1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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