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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZC3H15 Gene

protein-coding   GIFtS: 47
GCID: GC02P187350

zinc finger CCCH-type containing 15

 Explore 3 diseases affiliated with
ZC3H15 via our new
 Human Malady Compendium 
Biological research products
for ZC3H15
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Zinc Finger CCCH-Type Containing 151 2     HT0102
LEREPO41 2 3     MSTP0122
Likely Ortholog Of Mouse Immediate Early Response Erythropoietin 42 3     Zinc Finger CCCH Domain-Containing Protein 152
DRG Family-Regulatory Protein 12 3     DFRP13

External Ids:    HGNC: 295281   Entrez Gene: 558542   Ensembl: ENSG000000655487   UniProtKB: Q8WU903   

Export aliases for ZC3H15 gene to outside databases

Previous GC identifers: GC02P187060 GC02P179210


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZC3HF_HUMAN, Q8WU90
Function: Protects DRG1 from proteolytic degradation (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_005403.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZC3H15 gene promoter:
         Nkx3-1   Nkx3-1 v1   C/EBPalpha   Nkx3-1 v2   AREB6   MEF-2A   aMEF-2   NF-Y   Zic3   CBF(2)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZC3H15 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZC3H15

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZC3H15


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q32.1   Ensembl cytogenetic band:  2q32.1   HGNC cytogenetic band: 2q32.1

ZC3H15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZC3H15 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P187350:  view genomic region     (about GC identifiers)

Start:
187,350,883 bp from pter      End:
187,374,090 bp from pter
Size:
23,208 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZC3HF_HUMAN, Q8WU90 (See protein sequence)
Recommended Name: Zinc finger CCCH domain-containing protein 15  
Size: 426 amino acids; 48602 Da
Subunit: Interacts with DRG1; the interaction forms a polysomal DRG1-DFRP1/ZC3H15 complex which provides protein
stability to DRG1 possibly by blocking poly-ubiquitination
Subcellular location: Cytoplasm. Nucleus (By similarity). Note=The DRG1-DFRP2/ZC3H15 complex associates with polysomes
Sequence caution: Sequence=AAF28981.1; Type=Frameshift; Positions=17; Sequence=AAF67649.1; Type=Frameshift;
Positions=392, 407, 422; Sequence=AAL55770.1; Type=Frameshift; Positions=92; Sequence=AAQ13514.1; Type=Frameshift;
Positions=404, 424;
Secondary accessions: D3DPG7 Q5QTQ4 Q8WZ06 Q9NUZ3 Q9NZ37 Q9P079

Explore the universe of human proteins at neXtProt for ZC3H15: NX_Q8WU90

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8WU90

  • ZC3H15 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_060941.2  
    ENSEMBL proteins: 
     ENSP00000338788   ENSP00000410981   ENSP00000407192   ENSP00000415788   ENSP00000440525  

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    Uscn Proteins for ZC3H15

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--
    GO:0005737cytoplasm IDA--


    ZC3H15 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ZC3H15 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR000571 Znf_CCCH

    Graphical View of Domain Structure for InterPro Entry Q8WU90

    ProtoNet protein and cluster: Q8WU90

    1 Blocks protein family: IPB000571 Zn-finger

    UniProtKB/Swiss-Prot: ZC3HF_HUMAN, Q8WU90
    Similarity: Belongs to the ZC3H15/TMA46 family
    Similarity: Contains 2 C3H1-type zinc fingers


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ZC3HF_HUMAN, Q8WU90
    Function: Protects DRG1 from proteolytic degradation (By similarity)

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    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0005515protein binding IPI19819225
    GO:0008270zinc ion binding IEA--


    ZC3H15 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for ZC3H15:
     Decreased viability with pacli  Increased Hepatitis C virus re  Synthetic lethal with Ras 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZC3H15

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    5/20 Interacting proteins for ZC3H15 (Q8WU902, 3 ENSP000003387884) via UniProtKB, MINT, STRING, and/or I2D (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    C8orf33Q9H7E92, 3MINT-8250578 I2D: score=2 
    TNNT1P138052, 3MINT-8275127 I2D: score=2 
    DRG1Q9Y2953, ENSP000003297154I2D: score=4 STRING: ENSP00000329715
    ABCF3Q9NUQ83, ENSP000004114714I2D: score=1 STRING: ENSP00000411471
    UBCP0CG483, ENSP000003448184I2D: score=2 STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0019221cytokine-mediated signaling pathway IEA--


    ZC3H15 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZC3H15
    Search CenterWatch for drugs/clinical trials and news about ZC3H15 / ZC3HF 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZC3H15 gene: 
    NM_018471.2  

    Unigene Cluster for ZC3H15:

    Zinc finger CCCH-type containing 15
    Hs.741180  [show with all ESTs]
    Unigene Representative Sequence: AK298615
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000337859(uc002upo.3) ENST00000421536 ENST00000437396 ENST00000477672
    ENST00000481101 ENST00000468120 ENST00000496289 ENST00000498757 ENST00000445547
    ENST00000544130

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    Additional cDNA sequence: 

    AF109366.1 AF119892.2 AF147724.1 AF161421.1 AF220184.1 AF289586.1 AF462448.1 AK001901.1 
    AK297658.1 AK298615.1 AL049948.1 BC012336.1 BC021102.1 

    14 DOTS entries:

    DT.416259  DT.99986229  DT.100813839  DT.121034625  DT.91758211  DT.100813846  DT.75185742  DT.312650 
    DT.100813844  DT.416262  DT.121034664  DT.95133135  DT.100655472  DT.95154249 

    24/371 AceView cDNA sequences (see all 371):

    CA442376 CB242386 BG116547 AI828236 BU169907 BU153073 AA550976 BU685549 
    AV728145 BM825257 AA321996 BM911458 BM756137 BG681931 BM755848 BM989179 
    CA448311 BM700472 BM312246 BP371687 CR618848 BU182120 CA389493 AW467651 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H15    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
    SP1:                                                                        
    SP2:                                                                        
    SP3:              -                                                         


    ECgene alternative splicing isoforms for ZC3H15

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZC3H15 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AGCACTGTAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ZC3H15 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZC3H15

    SOURCE GeneReport for Unigene cluster: Hs.741180
        SABiosciences Custom PCR Arrays for ZC3H15
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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZC3H15

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ZC3H15 gene from 10/36 species (see all 36)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zc3h151 , 5 zinc finger CCCH-type containing 151, 5 91.08(n)1
    95.54(a)1
      2 (49.33 cM)5
    690821  NM_026934.31  NP_081210.21 
     836444355 
    chicken
    (Gallus gallus)
    Aves ZC3H151 zinc finger CCCH-type containing 15 82(n)
    88.5(a)
      423992  NM_001006510.1  NP_001006510.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZC3H156
    --
    88(a)
    1 ↔ 1
    GL343737.1(4186-11876)
    African clawed frog
    (Xenopus laevis)
    Amphibia CA787825.12   -- 78.51(n)    CA787825.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufi40a122 wufi40a12 73.15(n)   334307  BC044451.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG86351 CG8635 57.54(n)
    57.04(a)
      35850  NM_136557.2  NP_610401.1 
    worm
    (Caenorhabditis elegans)
    Secernentea CELE_F27D4.41 Protein F27D4.4 60.1(n)
    55(a)
      172538  NM_001047191.2  NP_001040656.2 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes TMA461 Tma46p 57.01(n)
    51.72(a)
      854258   NP_014734.2 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G202801 zinc finger CCCH domain-containing protein 21 55.81(n)
    46.07(a)
      816547  NM_127587.2  NP_179618.1 
    rice
    (Oryza sativa)
    Liliopsida Os.320862 Oryza sativa (japonica cultivar-group) cDNA clone001-206-H10, full insert sequence less 73.97(n)    AK101559.1 


    ENSEMBL Gene Tree for ZC3H15 (if available)
    TreeFam Gene Tree for ZC3H15 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/354 NCBI SNPs in ZC3H15 are shown (see all 354    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1146294811,2
    --187348964(+) CCTTGG/TACTAT 1 -- us2k10--------
    rs13767811,2
    C,F,O,H,--187348984(+) GCACTG/CTTTTG 1 -- us2k123Minor allele frequency- C:0.16NA NS EA 2790
    rs1912509701,2
    --187349003(+) TCGTTC/TGAATT 1 -- us2k10--------
    rs124730761,2
    C,F,A,H,--187349063(+) TACCAT/CTTGCT 1 -- us2k127Minor allele frequency- C:0.34NA NS EA WA CSA 2664
    rs1175533491,2
    --187349109(+) AAAAGT/CAGTGA 1 -- us2k11Minor allele frequency- C:0.01EA 120
    rs1829952981,2
    --187349273(+) GAAAAA/TACCGA 1 -- us2k10--------
    rs1450213181,2
    --187349310(+) TTATGA/CACCAT 1 -- us2k10--------
    rs1884373631,2
    --187349345(+) TTATGA/GGACTC 1 -- us2k10--------
    rs1906857981,2
    --187349416(+) TCAGTA/GAAATT 1 -- us2k10--------
    rs1822670101,2
    --187349545(+) TAATAA/CTACTG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZC3H15 (187350883 - 187374090 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for ZC3H15
         1 CNV: 3403

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZC3H15 for disorders           About GeneDecksing

    3 diseases for ZC3H15:    About MalaCards
    mental disorders    malaria    hiv type 1


    Export disorders for ZC3H15 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZC3H15 gene, integrated from 9 sources (see all 25):
    (articles sorted by number of sources associating them with ZC3H15)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Independent stabilizations of polysomal Drg1/Dfrp1 co mplex and non-polysomal Drg2/Dfrp2 complex in mammalian cells. (PubMed id 19819225)1, 2 Ishikawa K....Inoue J. (2009)
    2. Identification of DRG family regulatory proteins (DFRPs): specific regulation of DRG1 and DRG2. (PubMed id 15676025)1, 2 Ishikawa K.... Inoue J. (2005)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Subtraction cloning and initial characterization of novel epo-immediate response genes. (PubMed id 10880228)1, 3 Gregory R.C....Wojchowski D.M. (2000)
    5. Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
    6. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    8. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    9. A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (2011)
    10. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 55854 HGNC: 29528 AceView: LEREPO4 Ensembl:ENSG00000065548 euGenes: HUgn55854
    ECgene: ZC3H15 H-InvDB: ZC3H15

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZC3H15 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZC3H15 gene:
    Search GeneIP for patents involving ZC3H15

    GeneCards and IP:
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