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Aliases for ZC3H13 Gene

Aliases for ZC3H13 Gene

  • Zinc Finger CCCH-Type Containing 13 2 3
  • KIAA0853 2 3 4
  • Zinc Finger CCCH Domain-Containing Protein 13 3

External Ids for ZC3H13 Gene

Previous HGNC Symbols for ZC3H13 Gene

  • KIAA0853

Previous GeneCards Identifiers for ZC3H13 Gene

  • GC13M045426
  • GC13M046528
  • GC13M027333

Summaries for ZC3H13 Gene

GeneCards Summary for ZC3H13 Gene

ZC3H13 (Zinc Finger CCCH-Type Containing 13) is a Protein Coding gene. Diseases associated with ZC3H13 include esotropia and imperforate anus.

Gene Wiki entry for ZC3H13 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3H13 Gene

Genomics for ZC3H13 Gene

Regulatory Elements for ZC3H13 Gene

Genomic Location for ZC3H13 Gene

45,954,465 bp from pter
46,052,761 bp from pter
98,297 bases
Minus strand

Genomic View for ZC3H13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZC3H13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H13 Gene

Proteins for ZC3H13 Gene

  • Protein details for ZC3H13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger CCCH domain-containing protein 13
    Protein Accession:
    Secondary Accessions:
    • A2A323
    • O94936
    • Q5T1Z9
    • Q7Z7J3
    • Q8NDT6
    • Q9H0L6

    Protein attributes for ZC3H13 Gene

    1668 amino acids
    Molecular mass:
    196635 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZC3H13 Gene


neXtProt entry for ZC3H13 Gene

Proteomics data for ZC3H13 Gene at MOPED

Post-translational modifications for ZC3H13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZC3H13 Gene

Antibody Products

No data available for DME Specific Peptides for ZC3H13 Gene

Domains for ZC3H13 Gene

Gene Families for ZC3H13 Gene

Protein Domains for ZC3H13 Gene


Graphical View of Domain Structure for InterPro Entry



  • Contains 1 C3H1-type zinc finger.
  • Contains 1 C3H1-type zinc finger.
genes like me logo Genes that share domains with ZC3H13: view

Function for ZC3H13 Gene

Gene Ontology (GO) - Molecular Function for ZC3H13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20195357
GO:0044822 poly(A) RNA binding IDA 22681889
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZC3H13: view
genes like me logo Genes that share phenotypes with ZC3H13: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZC3H13

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZC3H13 Gene

Localization for ZC3H13 Gene

Subcellular locations from

Jensen Localization Image for ZC3H13 Gene COMPARTMENTS Subcellular localization image for ZC3H13 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZC3H13 Gene

Pathways for ZC3H13 Gene

SuperPathways for ZC3H13 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZC3H13 Gene


No data available for Pathways by source for ZC3H13 Gene

Transcripts for ZC3H13 Gene

Unigene Clusters for ZC3H13 Gene

Zinc finger CCCH-type containing 13:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZC3H13

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H13 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b ^
SP1: -
SP6: -

ExUns: 21a · 21b ^ 22 ^ 23 ^ 24

Relevant External Links for ZC3H13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZC3H13 Gene

mRNA expression in normal human tissues for ZC3H13 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for ZC3H13 Gene

This gene is overexpressed in Liver (20.8) and Brain (16.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZC3H13 Gene

SOURCE GeneReport for Unigene cluster for ZC3H13 Gene Hs.136102

genes like me logo Genes that share expressions with ZC3H13: view

Expression partners for ZC3H13 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZC3H13 Gene

Orthologs for ZC3H13 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ZC3H13 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Zc3h13 16
Zc3h13 36
  • 77 (a)
(Bos Taurus)
Mammalia ZC3H13 36
  • 85 (a)
(Canis familiaris)
Mammalia ZC3H13 36
  • 88 (a)
(Monodelphis domestica)
Mammalia ZC3H13 36
  • 75 (a)
(Ornithorhynchus anatinus)
Mammalia ZC3H13 36
  • 77 (a)
(Pan troglodytes)
Mammalia ZC3H13 36
  • 100 (a)
(Gallus gallus)
Aves ZC3H13 36
  • 73 (a)
(Anolis carolinensis)
Reptilia ZC3H13 36
  • 68 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6022 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.4590 35
(Danio rerio)
Actinopterygii zgc66359 35
zc3h13 36
  • 44 (a)
(Oryza sativa)
Liliopsida Os.5417 35
Species with no ortholog for ZC3H13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZC3H13 Gene

Gene Tree for ZC3H13 (if available)
Gene Tree for ZC3H13 (if available)

Paralogs for ZC3H13 Gene

No data available for Paralogs for ZC3H13 Gene

Variants for ZC3H13 Gene

Sequence variations from dbSNP and Humsavar for ZC3H13 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs718530 -- 45,989,518(-) TAGCC(A/G)TGAAT intron-variant
rs962694 -- 46,044,891(+) TTTTA(C/T)ACTAG intron-variant
rs963359 -- 46,012,590(+) CTGAG(A/T)GGGTA intron-variant
rs992631 -- 46,017,854(+) AGATA(C/T)TTTCA intron-variant
rs994351 -- 46,014,059(+) CTGGC(A/G)GTAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZC3H13 Gene

Variant ID Type Subtype PubMed ID
dgv250e201 CNV Deletion 23290073
nsv832597 CNV Loss 17160897
nsv900034 CNV Gain 21882294
dgv1579n71 CNV Gain 21882294
nsv832598 CNV Gain 17160897
dgv1580n71 CNV Gain 21882294
dgv1581n71 CNV Loss 21882294
esv2747355 CNV Deletion 23290073
esv2507198 CNV Deletion 19546169
esv2673081 CNV Deletion 23128226
nsv455876 CNV Gain 19166990
esv2666736 CNV Deletion 23128226

Relevant External Links for ZC3H13 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZC3H13 Gene

Disorders for ZC3H13 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for ZC3H13 Gene in MalaCards »

(2) Diseases for ZC3H13 Gene

(2) University of Copenhagen DISEASES for ZC3H13 Gene

Relevant External Links for ZC3H13

Human Genome Epidemiology (HuGE) Navigator
genes like me logo Genes that share disorders with ZC3H13: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships and Genatlas for ZC3H13 Gene

Publications for ZC3H13 Gene

  1. Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10048485) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  3. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4
  4. Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. (PMID: 15144186) Brill L.M. … Peters E.C. (Anal. Chem. 2004) 3 4
  5. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil S.A. … Gygi S.P. (Nat. Biotechnol. 2006) 3 4

Products for ZC3H13 Gene

Sources for ZC3H13 Gene

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