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ZC3H12D Gene

protein-coding GIFtS: 43

GC06M149811

zinc finger CCCH-type containing 12D
(Previous name: chromosome 6 open reading frame 95 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: C6orf95)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
C6orf95 ^², ⁵
EC 3.1.-.- ^³
FLJ46041 ^²
MCPIP4 ^¹, ², ³
TFL ^²
dJ281H8.1 ^¹, ²
p34 ^², ³, ⁵

Descriptions
MCP induced protein 4 ^²
MCP-induced protein 4 ^², ³
Probable ribonuclease ZC3H12D ^²
Zinc finger CCCH domain-containing protein 12D ^², ³
chromosome 6 open reading frame 95 ^¹
tumor suppressor TFL ^²
zinc finger CCCH-type containing 12D ^²

External Ids
HGNC: 21175¹
Entrez Gene: 340152²
UniProtKB: A2A288³
Ensembl: ENSG00000178199⁷

Search outside databases for aliases for ZC3H12D gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZC12D_HUMAN, A2A288

Function: May function as RNase and regulate the levels of target RNA species (Potential). Putative

tumor suppressor

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the ZC3H12D gene

Entrez Gene cytogenetic band: 6q25.1 Ensembl cytogenetic band: 6q25.1 HGNC cytogenetic band: 6q25.1

ZC3H12D Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M149811: (about GC identifiers)

Start:	149,812,571 bp from pter
End:	149,847,890 bp from pter
Size:	35,320 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000006.10 NT_025741.14

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ZC12D_HUMAN, A2A288 (See protein sequence)

Recommended Name: Probable ribonuclease ZC3H12D

Size: 527 amino acids; 58098 Da

Cofactor: Magnesium (Potential)

Sequence caution: Sequence=CAM28211.1; Type=Erroneous gene model prediction;

Secondary accessions: A1L178 B2RXF4 Q6ZRW2

Alternative splicing: 3 isoforms: A2A288-1 A2A288-2 A2A288-3

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_997243.1

ENSEMBL proteins:

ENSP00000386616 ENSP00000374592 ENSP00000387062

Human Recombinant Proteins

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Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

Antibodies for ZC3H12D:

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	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
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	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
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	Search Novus for antibodies for ZC3H12D

Assays for ZC3H12D:

	Browse Invitrogen for biochemical assays
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	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: A2A288

UniProtKB/Swiss-Prot: ZC12D_HUMAN, A2A288

Similarity: Belongs to the ZC3H12 family

Similarity: Contains 1 C3H1-type zinc finger

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZC3H12D)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

Browse Origene for 29mer shRNA kit in GFP-retroviral vector

Applied Biosystems Silencer® siRNAs for ZC3H12D

Sigma-Aldrich siRNA for ZC3H12D

Sigma-Aldrich shRNA for ZC3H12D

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_207360
Myc/DDK tagged cDNA clone in CMV expression vector: NM_207360
untagged cDNA clone in CMV expression vector: NM_207360

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_207360

UniProtKB/Swiss-Prot: ZC12D_HUMAN, A2A288

Function: May function as RNase and regulate the levels of target RNA species (Potential). Putative

tumor suppressor

Induction: By prolonged exposure to lipopolysaccharide (LPS) in acute monocytic leukemia cell line

THP-1 cells

Enzyme Number (IUBMB): EC 3.1.-.-

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008270	zinc ion binding	IEA	--
GO:0046872	metal ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

2 Interacting proteins for ZC3H12D (ENSP00000374592³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
LENG9	ENSP00000331647³	STRING (score=.7)
ZC3H7A	ENSP00000347999³	STRING (score=.7)

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ZC3H12D

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZC3H12D)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

Browse Origene for 29mer shRNA kit in GFP-retroviral vector

Sigma-Aldrich siRNA for ZC3H12D

Sigma-Aldrich shRNA for ZC3H12D

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_207360

REFSEQ mRNAs for ZC3H12D gene:

NM_207360.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_207360

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_207360
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_207360
                                 untagged cDNA clone in CMV expression vector: NM_207360

Additional cDNA sequence:

AB458221.1 AB458222.1 AK090441.1 AK127932.1 BC127762.1 BC157832.1

4 DOTS entries:

DT.40223841 DT.95086605 DT.430132 DT.100666862

24/154 AceView cDNA sequences (see all 154 ):

BC020986 BM757769 BE670173 BM759666 AF357880 BQ719311 AK092069 AI915665

CB160587 AA132257 CN478570 AA346646 NM_139126 BC016984 CA441139 BU076634

AA053882 BE887609 BQ019220 AI720056 CB160330 BQ185821 BM562747 BC064134

highest scoring ESTs for ZC3H12D:

BM152774 BF975976 AK127932 AW504645 BU430916 CN285548 AA714003 AA837405 AI697060 AK090441

Unigene Cluster for ZC3H12D:

Zinc finger CCCH-type containing 12D

Hs.632618 [show with all ESTs]

Unigene Representative Sequence: AK090441

GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations:

ENST00000409806 ENST00000389942 ENST00000409948

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ZC3H12D expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for ZC3H12D

¹ / ² / ³

2 probe-sets matching ZC3H12D gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
67879_at²^{, 3}	U95-E	1	1.00	1.00	1.00	1.00	AI697060	0.40	0.50	0.45	1
1559263_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks ZC3H12D for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: CTTCAAAAAT

SOURCE GeneReport for Unigene cluster: Hs.632618

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ZC3H12D gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	ZC3H12D¹	--	zinc finger CCCH-type containing 12D	94.7(n) 94.7(a)	463059 XM_518794.2 XP_518794.2
cow (Bos taurus)	ZC3H12D¹	--	zinc finger CCCH-type containing 12D	86.64(n) 86.53(a)	615863 XM_867784.2 XP_872877.2
rat (Rattus norvegicus)	Zc3h12d¹	--	zinc finger CCCH type containing 12D	80.62(n) 81.47(a)	308266 XM_218069.4 XP_218069.4
mouse (Mus musculus)	Zc3h12d^{1, 5}	10⁵	zinc finger CCCH type containing 12D^{1, 5}	83.73(n)¹ 85.31(a)¹	237256¹ NM_172785.2¹ NP_766373.1¹ AK052806⁵ BB661745⁵ (see all 6)
chicken (Gallus gallus)	ZC3H12D¹	--	zinc finger CCCH-type containing 12D	69.56(n) 72.22(a)	421623 XM_419661.2 XP_419661.2

About this table Species with no ortholog for ZC3H12D

ENSEMBL Gene Tree for ZC3H12D

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ZC3H12D gene

ZC3H12C² ZC3H12B² ZC3H12A²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/338 NCBI SNPs in ZC3H12D are shown (see all 338 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 120)

AB	SNP ID	Valid	Chr 6 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs2179368^1,2	A,C,F,H	149848245(-)	`CTTGCC/TCTGAC`	1	--	ng3¹		14		EA EU WA	1438
	rs556775^1,2	A,C,F,H	149837385(-)	`GTGGCC/TGCTGG`	1	--	ut5¹ ese³		7		EU EA WA NA	506
	rs4897127^1,2	A,C,F,H	149849216(+)	`CATACC/TAGAAA`	1	--	ng3¹		8		EU EA WA	840
--	rs7747948^1,2	A,C,F	149837215(+)	`CAGCCG/AGGTGC`	1	P/L	mis¹ ese³		3		NA	114
	rs412746^1,2	A,C,F	149813037(-)	`AGACTG/ATGAAT`	1	--	ut3¹		1		MN	184
	rs4895791^1,2	C,F,H	149849239(+)	`TAGTCA/GCTGCA`	1	--	ng3¹		7		EU EA WA NA	560
	rs626755^1,2	C,F,H	149812757(+)	`gactgT/Cgtgtg`	1	--	ut3¹ ese³		4		EU EA WA	412
--	rs805027^1,2	A,C	149812369(-)	`gaatcA/Gcttga`	1	--	ng5¹		0	--	--	--	--
--	rs7773171^1,2	A,C	149837399(+)	`CGCAGG/TTCCTG`	1	--	ut5¹ ese³		0	--	--	--	--
--	rs12528004^1,2	A	149812786(+)	`tgtgtG/Ttgtgt`	1	--	ut3¹ ese³		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for ZC3H12D (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 611106

UniProtKB/Swiss-Prot: ZC12D_HUMAN, A2A288

A chromosomal aberration involving ZC3H12D may be the cause of the transformation of

follicular lymphoma (FL) to diffuse large B-cell lymphoma (DLBCL). Translocation t(2;6)(p12;q25)

with IGK. Resulting protein may not be expressed

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

7 PubMed articles for ZC3H12D gene:

A novel CCCH-zinc finger protein family regulates proinflammatory activation of macrophages. (PubMed id 18178554)^{2, 3, 4} Liang J....Fu M. (2008)
Identification of a novel tumor suppressor gene p34 on human chromosome 6q25.1. (PubMed id 17210687)^{3, 4} Wang M....You M. (2007)
Deregulation of a possible tumour suppressor gene, ZC3H12D, by translocation of IGK@ in transformed follicular lymphoma with t(2;6)(p12;q25). (PubMed id 17854321)^{3, 4} Minagawa K.... Matsui T. (2007)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{3, 4} Ota T....Sugano S. (2004)
The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)^{3, 4} Mungall A.J.... Beck S. (2003)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 340152	HGNC: 21175	AceView: FLJ46041	Ensembl:ENSG00000178199	euGenes: HUgn340152
ECgene: ZC3H12D	H-InvDB: ZC3H12D

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for ZC3H12D
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for ZC3H12D:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for ZC3H12D-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
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	Millipore Target Screening & Profiling Services

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ZC3H12D Gene

protein-coding GIFtS: 43

Aliases &
Descriptions
for ZC3H12D

Summaries
for ZC3H12D

Genomic Location
for ZC3H12D

Proteins
for ZC3H12D

Protein Domains/
Families
for ZC3H12D

Gene Function
for ZC3H12D

Pathways & Interactions
for ZC3H12D

Drugs & Compounds
for ZC3H12D

Transcripts
for ZC3H12D

Expression
for ZC3H12D

Orthologs
for ZC3H12D

Paralogs
for ZC3H12D

SNPs/Variants
for ZC3H12D

Disorders & Mutations
for ZC3H12D

Medical News
for ZC3H12D

Publications
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Genome Databases showing ZC3H12D

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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

ZC3H12D Gene

protein-coding GIFtS: 43

Aliases & Descriptionsfor ZC3H12D

Summariesfor ZC3H12D

Genomic Locationfor ZC3H12D

Proteinsfor ZC3H12D

Protein Domains/Familiesfor ZC3H12D

Gene Functionfor ZC3H12D

Pathways & Interactionsfor ZC3H12D

Drugs & Compoundsfor ZC3H12D

Transcriptsfor ZC3H12D

Expression for ZC3H12D

Orthologsfor ZC3H12D

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SNPs/Variantsfor ZC3H12D

Disorders & Mutationsfor ZC3H12D

Medical Newsfor ZC3H12D

Publicationsfor ZC3H12D

Search for ZC3H12D

Genome Databases showing ZC3H12D

Other Databases showing ZC3H12D

Specialized Databases showing ZC3H12D

Licensable Technologiesfor ZC3H12D

Servicesfor ZC3H12D

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for ZC3H12D

Summaries
for ZC3H12D

Genomic Location
for ZC3H12D

Proteins
for ZC3H12D

Protein Domains/
Families
for ZC3H12D

Gene Function
for ZC3H12D

Pathways & Interactions
for ZC3H12D

Drugs & Compounds
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