ZC3H12A Gene
protein-coding GIFtS: 49
GCID: GC01P037940
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|
zinc finger CCCH-type containing 12A
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Aliases
for ZC3H12A gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Finger CCCH-Type Containing 12A1 2 | | RP3-423B22.12 | | MCPIP11 2 3 | | DJ423B22.11 | | Zinc Finger CCCH Domain-Containing Protein 12A2 3 | | MCP Induced Protein 12 | | MCPIP2 3 | | MCP-1 Treatment-Induced Protein2 | | MCP-Induced Protein 12 3 | | Ribonuclease ZC3H12A2 | | FLJ232311 | | EC 3.1.-.-3 |
Export aliases for ZC3H12A gene to outside databasesPrevious GC identifers: GC01P037611 GC01P037712 GC01P036058 |
Summaries
for ZC3H12A gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ZC3H12A:
ZC3H12A is an MCP1 (CCL2; MIM 158105)-induced protein that acts as a transcriptional activator and causes cell death ofcardiomyocytes, possibly via induction of genes associated with apoptosis.(supplied by OMIM, Mar 2008)
UniProtKB/Swiss-Prot: ZC12A_HUMAN, Q5D1E8Function: Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response andinflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of themRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA (By similarity). Triggers apoptosis and promotesangiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19
|
Genomic Views
for ZC3H12A gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_032977.9
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZC3H12A gene promoter:
Max1 c-Fos GATA-3 Tal-1 AP-1 E47 PPAR-gamma1 c-Myb PPAR-gamma2 c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZC3H12A
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZC3H12A |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1p34.3 Ensembl cytogenetic band: 1p34.3 HGNC cytogenetic band: 1p34.3ZC3H12A Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P037940: view genomic region
(about GC identifiers)
Start:
|
37,940,119 bp from pter |
End:
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37,949,978 bp from pter |
Size:
|
9,860 bases |
Orientation:
|
plus strand |
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Proteins
for ZC3H12A gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZC12A_HUMAN, Q5D1E8 (See
protein sequence)Recommended Name: Ribonuclease ZC3H12A Size: 599 amino acids; 65699 Da
Cofactor: Magnesium
Subcellular location: Cytoplasm (By similarity). Nucleus
Miscellaneous: Increased expression of ZC3H12A is associated with ischemic heart disease
Caution: Was originally (PubMed:18364357) proposed to bind to DNA and act as transcription factor
3 PDB 3D structures from  and Proteopedia  for ZC3H12A:3V32 (3D)
3V33 (3D)
3V34 (3D)
Secondary accessions: D3DPT0 Q6I9Z1 Q9H5P1Explore the universe of human proteins at neXtProt for ZC3H12A: NX_Q5D1E8
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5D1E8
ZC3H12A Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_079355.2
ENSEMBL proteins: ENSP00000362179 ENSP00000362174
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
ZC3H12A for ontologies About GeneDecksing
ZC3H12A Antibody Products:
Assay Products for ZC3H12A: |
Protein
Domains /
Families
for ZC3H12A gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZC3H12A for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q5D1E8ProtoNet protein and cluster: Q5D1E8 UniProtKB/Swiss-Prot: ZC12A_HUMAN, Q5D1E8Similarity: Belongs to the ZC3H12 familySimilarity: Contains 1 C3H1-type zinc finger |
Function
for ZC3H12A gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: ZC12A_HUMAN, Q5D1E8Function: Has RNase activity and selectively degrades specific target mRNA species. Modulates the immune response andinflammation by regulating the decay of specific mRNA molecules. Recognizes the 3'-untranslated region (UTR) of themRNA for IL6, CALCR and IL12B. Required for normal decay of IL6 mRNA (By similarity). Triggers apoptosis and promotesangiogenesis in response to the binding of CCL2 to CCR2. Regulates expression of CDH12 and CHD19Induction: By cytokines (TNF-alpha and interleukin-1) in acute monocytic leukemia cell line THP-1 cellsEnzyme Number (IUBMB): EC 3.1.-.-1
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZC3H12A (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZC3H12A
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ZC3H12A (NM_025079) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZC3H12A |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
ZC3H12A for ontologies About GeneDecksing
Animal Models:
Mouse knock-out Zc3h12atm1Aki for ZC3H12A
6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Zc3h12a):
ZC3H12A for phenotypes About GeneDecksing
|
Pathways & Interactions
for ZC3H12A gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZC3H12A
STRING Interaction
Network Preview (showing 5 interactants - click image to see 12)
5/12 Interacting proteins for ZC3H12A (Q5D1E81, 2, 3 ENSP000003621744) via UniProtKB, MINT, STRING, and/or I2D (see all 12)About this table
Gene Ontology (GO): 5/15 biological process terms (GO ID links to tree view) (see all 15): About this table
ZC3H12A for ontologies About GeneDecksing
|
Drugs & Compounds
for ZC3H12A gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZC3H12A
Search CenterWatch for drugs/clinical trials and news about ZC3H12A / ZC12A
|
Transcripts
for ZC3H12A gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZC3H12A gene: NM_025079.2 Unigene Cluster for ZC3H12A: Zinc finger CCCH-type containing 12A Hs.656294 [show with all ESTs]Unigene Representative Sequence: NM_0250795 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000373087(uc001cbb.4) ENST00000373082 ENST00000492829(uc001cbc.1)
ENST00000472312 ENST00000471012
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZC3H12A (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZC3H12A
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ZC3H12A (NM_025079) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZC3H12A | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZC3H12A |
Additional cDNA sequence: AK026884.1 AK093343.1 AY920403.1 BC005001.1 CR457364.1 FJ695517.1 9 DOTS entries: DT.451660 DT.100783966 DT.92026405 DT.121360856 DT.86845883 DT.95355975 DT.91701293 DT.95364524 DT.99967911 24/120 AceView cDNA sequences (see all 120): AA640102 AI082816 BM980772 AU280264 AA909913 BQ691835 BC005001 AI160574 AL710798 AW104766 CB126802 CB131278 AA922836 BU540574 AI631181 CD722510 BX953361 BQ927247 AW138503 AI538369 AW130116 BM552961 AW206332 BU509091
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H12A About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | ^ | 6 |
|---|
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| SP1: | | | | | | | - | | | | | | | | - | | | | - | | | | |
| SP2: | | | | | | | - | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | - | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for ZC3H12A
|
Expression
for ZC3H12A gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZC3H12A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See ZC3H12A Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZC3H12A
SOURCE GeneReport for Unigene cluster: Hs.656294
SABiosciences Custom PCR Arrays for ZC3H12A
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZC3H12A
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ZC3H12A | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZC3H12A | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZC3H12A | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZC3H12A |
Orthologs
for ZC3H12A gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for ZC3H12A gene from 5/17 species (see all 17) About this table
ENSEMBL Gene Tree for ZC3H12A (if available)
TreeFam Gene Tree for ZC3H12A (if available) |
Paralogs
for ZC3H12A gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZC3H12A gene
- NYNRIN2 ZC3H12C2 N4BP12 ZC3H12B2 ZC3H12D2 KHNYN2
3 SIMAP similar genes for ZC3H12A using alignment to 2 protein entries: ZC12A_HUMAN (see all proteins):ZC3H12B ZC3H12C ZC3H12D
ZC3H12A for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for ZC3H12A
PGOHUM00000241157
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Genomic Variants
for ZC3H12A gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZC3H12A (37940119 - 37949978 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for ZC3H12A
1 CNV: 0006 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZC3H12A |
|
Disorders
/ Diseases
for ZC3H12A gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZC3H12A for disorders About GeneDecksing
OMIM gene information: 610562
OMIM disorders: --
5  diseases for ZC3H12A: About MalaCardsmonocytic leukemia acute monocytic leukemia acne leukemia
prostatitis
Export disorders for ZC3H12A gene to outside databases
|
Publications
for ZC3H12A gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZC3H12A gene, integrated from 9 sources (see all 24):
(articles sorted by number of sources associating them with ZC3H12A) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A novel CCCH-zinc finger protein family regulates proinflammatory activation of macrophages. (PubMed id 18178554)1, 2, 3 Liang J....Fu M. (2008)
- MCPIP1 ribonuclease antagonizes dicer and terminates microRNA biogenesis through precursor microRNA degradation. (PubMed id 22055188)1, 3 Suzuki H.I....Miyazono K. (2011)
- Monocyte chemotactic protein (MCP)-1 promotes angiogenesis via a novel transcription factor, MCP-1-induced protein (MCPIP). (PubMed id 18364357)1, 2 Niu J.... Kolattukudy P.E. (2008)
- Monocyte chemoattractant protein-1 induces a novel transcription factor that causes cardiac myocyte apoptosis and ventricular dysfunction. (PubMed id 16574901)1, 2 Zhou L.... Kolattukudy P.E. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Regulatory feedback loop between NF-kappaB and MCP-1- induced protein 1 RNase. (PubMed id 19747262)1, 9 Skalniak L....Jura J. (2009)
- Monocyte chemotactic protein-induced protein (MCPIP) p romotes inflammatory angiogenesis via sequential induction of oxidative stress, endoplasmic reticulum stress and autophagy. (PubMed id 22820500)1 Roy A. and Kolattukudy P.E. (2012)
- Structural study of MCPIP1 N-terminal conserved domain reveals a PIN- like RNase. (PubMed id 22561375)2 Xu J.... Rao Z. (2012)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
- Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PubMed id 21903422)1 Li S....Dorf M.E. (2011)
|
External Searches for ZC3H12A gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZC3H12A gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZC3H12A gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZC3H12A gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZC3H12A | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZC3H12A gene:
Search GeneIP for patents involving ZC3H12A
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZC3H12A gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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variant library, vector shuttling | | | OriGene Custom Antibody Services for ZC3H12A | | OriGene Custom Protein Services for ZC3H12A | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZC3H12A | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZC3H12A | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZC3H12A | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZC3H12A | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZC3H12A | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZC3H12A |
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 | | | ZC3H12A Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZC3H12A |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZC3H12A |
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