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Aliases for ZC3H11B Gene

Aliases for ZC3H11B Gene

  • Zinc Finger CCCH-Type Containing 11B 2 3 5
  • Zinc Finger CCCH-Type Containing 11B Pseudogene 2
  • Zinc Finger CCCH-Type Domain Containing 11B 3
  • ZC3HDC11B 3

External Ids for ZC3H11B Gene

Previous HGNC Symbols for ZC3H11B Gene

  • ZC3HDC11B

Previous GeneCards Identifiers for ZC3H11B Gene

  • GC01M216170
  • GC01U901371
  • GC01M217848
  • GC01M219781
  • GC01M190452

Summaries for ZC3H11B Gene

GeneCards Summary for ZC3H11B Gene

ZC3H11B (Zinc Finger CCCH-Type Containing 11B) is a Protein Coding gene. An important paralog of this gene is ZC3H11A.

Additional gene information for ZC3H11B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3H11B Gene

Genomics for ZC3H11B Gene

GeneHancer (GH) Regulatory Elements for ZC3H11B Gene

Promoters and enhancers for ZC3H11B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I219612 Promoter 0.5 Ensembl 550.8 +0.1 144 0.4 ZC3H11B GC01M219610
GH01I220044 Promoter/Enhancer 1.6 Ensembl ENCODE 25 -433.0 -432982 3 MLX FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 SSRP1 ZNF610 EPRS ZC3H11B RPS15AP12 GC01P220002
GH01I220088 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.6 -476.6 -476635 2 HDGF PKNOX1 FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 IRF4 YY1 BPNT1 RPS15AP12 ZC3H11B RIMKLBP2 EPRS PIR35692
GH01I219925 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 12.6 -314.5 -314501 3.6 PKNOX1 SMAD1 FOXA2 MLX ARID4B DMAP1 ZNF2 YY1 CBX5 SP5 SLC30A10 RPS15AP12 ZC3H11B RIMKLBP2 GC01P219890
GH01I219906 Enhancer 1.2 Ensembl ENCODE 15.4 -294.3 -294301 1.4 HDGF PKNOX1 SMAD1 FOXA2 ARNT YBX1 POLR2B ZNF766 E2F8 ZNF592 SLC30A10 ZC3H11B RPS15AP12 GC01P219890
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZC3H11B on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZC3H11B Gene

Genomic Locations for ZC3H11B Gene
chr1:219,607,927-219,613,145
(GRCh38/hg38)
Size:
5,219 bases
Orientation:
Minus strand
chr1:219,781,269-219,786,487
(GRCh37/hg19)

Genomic View for ZC3H11B Gene

Genes around ZC3H11B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZC3H11B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZC3H11B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H11B Gene

Proteins for ZC3H11B Gene

  • Protein details for ZC3H11B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTU1
    Recommended name:
    Zinc finger CCCH-type-containing 11B
    Protein Accession:
    A0A1B0GTU1

    Protein attributes for ZC3H11B Gene

    Size:
    805 amino acids
    Molecular mass:
    88937 Da
    Quaternary structure:
    No Data Available
  • Protein details for ZC3H11B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUI2
    Recommended name:
    Zinc finger CCCH-type-containing 11B
    Protein Accession:
    A0A1B0GUI2

    Protein attributes for ZC3H11B Gene

    Size:
    810 amino acids
    Molecular mass:
    89513 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZC3H11B Gene

Post-translational modifications for ZC3H11B Gene

No Post-translational modifications

Other Protein References for ZC3H11B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZC3H11B Gene

Domains & Families for ZC3H11B Gene

Gene Families for ZC3H11B Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZC3H11B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZC3H11B: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZC3H11B Gene

Function for ZC3H11B Gene

Phenotypes From GWAS Catalog for ZC3H11B Gene

Animal Model Products

miRNA for ZC3H11B Gene

miRTarBase miRNAs that target ZC3H11B

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZC3H11B Gene

Localization for ZC3H11B Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear speckles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZC3H11B Gene

Pathways & Interactions for ZC3H11B Gene

SuperPathways for ZC3H11B Gene

No Data Available

Interacting Proteins for ZC3H11B Gene

Gene Ontology (GO) - Biological Process for ZC3H11B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZC3H11B Gene

Drugs & Compounds for ZC3H11B Gene

No Compound Related Data Available

Transcripts for ZC3H11B Gene

mRNA/cDNA for ZC3H11B Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H11B Gene

No ASD Table

Relevant External Links for ZC3H11B Gene

GeneLoc Exon Structure for
ZC3H11B
ECgene alternative splicing isoforms for
ZC3H11B

Expression for ZC3H11B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZC3H11B Gene

NURSA nuclear receptor signaling pathways regulating expression of ZC3H11B Gene:

ZC3H11B
genes like me logo Genes that share expression patterns with ZC3H11B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZC3H11B Gene

Orthologs for ZC3H11B Gene

Evolution for ZC3H11B Gene

ENSEMBL:
Gene Tree for ZC3H11B (if available)
TreeFam:
Gene Tree for ZC3H11B (if available)

No data available for Orthologs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

genes like me logo Genes that share paralogs with ZC3H11B: view

Variants for ZC3H11B Gene

Additional Variant Information for ZC3H11B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZC3H11B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZC3H11B Gene

Disorders for ZC3H11B Gene

Additional Disease Information for ZC3H11B

Genetic Association Database
(GAD)

No disorders were found for ZC3H11B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZC3H11B Gene

Publications for ZC3H11B Gene

  1. Association between Ocular Axial Length-Related Genes and High Myopia in a Han Chinese Population. (PMID: 26485405) Li YT … Wu J (Ophthalmologica. Journal international d'ophtalmologie. International journal of ophthalmology. Zeitschrift fur Augenheilkunde 2016) 3 58
  2. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 58
  3. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng CY … Baird PN (American journal of human genetics 2013) 3 58
  4. Genetic variants on chromosome 1q41 influence ocular axial length and high myopia. (PMID: 22685421) Fan Q … Saw SM (PLoS genetics 2012) 3 58
  5. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58

Products for ZC3H11B Gene

Sources for ZC3H11B Gene

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