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Aliases for ZC3H11B Gene

Aliases for ZC3H11B Gene

  • Zinc Finger CCCH-Type Containing 11B 2 3
  • Zinc Finger CCCH-Type Containing 11B Pseudogene 2 3 5
  • Zinc Finger CCCH-Type Domain Containing 11B 3
  • ZC3HDC11B 3

External Ids for ZC3H11B Gene

Previous HGNC Symbols for ZC3H11B Gene

  • ZC3HDC11B

Previous GeneCards Identifiers for ZC3H11B Gene

  • GC01M216170
  • GC01U901371
  • GC01M217848
  • GC01M219781
  • GC01M190452

Summaries for ZC3H11B Gene

GeneCards Summary for ZC3H11B Gene

ZC3H11B (Zinc Finger CCCH-Type Containing 11B) is a Pseudogene. An important paralog of this gene is ZC3H11A.

Additional gene information for ZC3H11B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3H11B Gene

Genomics for ZC3H11B Gene

Regulatory Elements for ZC3H11B Gene

Enhancers for ZC3H11B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H219906 1.3 Ensembl ENCODE 26 -294.3 -294302 1 HDGF PKNOX1 FOXA2 ATF1 ARNT YBX1 TCF12 GTF3C2 ZNF766 GATA2 ZC3H11B RPS15AP12 SLC30A10 RIMKLBP2 ENSG00000223842 SNX2P1 GC01P219890
GH01H220044 1.2 ENCODE 25 -433.0 -432983 2 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZC3H11B RPS15AP12 EPRS GC01P220002
GH01H219925 1.3 Ensembl ENCODE 12.6 -314.5 -314502 3 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF2 YY1 CBX5 SP5 MXD4 RPS15AP12 ZC3H11B RIMKLBP2 SLC30A10 GC01P219890
GH01H220114 1.3 ENCODE dbSUPER 12.6 -507.2 -507152 11 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 ZNF302 SP3 REST SMARCB1 MEF2D EPRS RPS15AP12 ZC3H11B RIMKLBP2 RAB3GAP2 ENSG00000272823 MIR194-1
GH01H220270 1.1 ENCODE 12.4 -659.0 -659048 2 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 ZNF766 RPS15AP12 SNX2P1 RAB3GAP2 ZC3H11B BPNT1 AURKAPS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZC3H11B on UCSC Golden Path with GeneCards custom track

Promoters for ZC3H11B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000020325 144 400

Genomic Location for ZC3H11B Gene

Chromosome:
1
Start:
219,607,927 bp from pter
End:
219,613,145 bp from pter
Size:
5,219 bases
Orientation:
Minus strand

Genomic View for ZC3H11B Gene

Genes around ZC3H11B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZC3H11B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZC3H11B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H11B Gene

Proteins for ZC3H11B Gene

  • Protein details for ZC3H11B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTU1
    Recommended name:
    Zinc finger CCCH-type-containing 11B pseudogene
    Protein Accession:
    A0A1B0GTU1

    Protein attributes for ZC3H11B Gene

    Size:
    805 amino acids
    Molecular mass:
    88937 Da
    Quaternary structure:
    No Data Available
  • Protein details for ZC3H11B Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUI2
    Recommended name:
    Zinc finger CCCH-type-containing 11B pseudogene
    Protein Accession:
    A0A1B0GUI2

    Protein attributes for ZC3H11B Gene

    Size:
    810 amino acids
    Molecular mass:
    89513 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZC3H11B Gene

Post-translational modifications for ZC3H11B Gene

No Post-translational modifications

Other Protein References for ZC3H11B Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZC3H11B Gene

Domains & Families for ZC3H11B Gene

Gene Families for ZC3H11B Gene

Protein Domains for ZC3H11B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZC3H11B: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZC3H11B Gene

Function for ZC3H11B Gene

Phenotypes From GWAS Catalog for ZC3H11B Gene

Animal Model Products

CRISPR Products

miRNA for ZC3H11B Gene

miRTarBase miRNAs that target ZC3H11B

Clone Products

  • Applied Biological Materials Clones for ZC3H11B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZC3H11B Gene

Localization for ZC3H11B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZC3H11B Gene

Pathways & Interactions for ZC3H11B Gene

SuperPathways for ZC3H11B Gene

No Data Available

Interacting Proteins for ZC3H11B Gene

Gene Ontology (GO) - Biological Process for ZC3H11B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZC3H11B Gene

Drugs & Compounds for ZC3H11B Gene

No Compound Related Data Available

Transcripts for ZC3H11B Gene

mRNA/cDNA for ZC3H11B Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ZC3H11B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H11B Gene

No ASD Table

Relevant External Links for ZC3H11B Gene

GeneLoc Exon Structure for
ZC3H11B
ECgene alternative splicing isoforms for
ZC3H11B

Expression for ZC3H11B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZC3H11B Gene

NURSA nuclear receptor signaling pathways regulating expression of ZC3H11B Gene:

ZC3H11B
genes like me logo Genes that share expression patterns with ZC3H11B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZC3H11B Gene

Orthologs for ZC3H11B Gene

Evolution for ZC3H11B Gene

ENSEMBL:
Gene Tree for ZC3H11B (if available)
TreeFam:
Gene Tree for ZC3H11B (if available)

No data available for Orthologs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

Paralogs for ZC3H11B Gene

genes like me logo Genes that share paralogs with ZC3H11B: view

Variants for ZC3H11B Gene

Relevant External Links for ZC3H11B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZC3H11B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZC3H11B Gene

Disorders for ZC3H11B Gene

Relevant External Links for ZC3H11B

Genetic Association Database (GAD)
ZC3H11B

No disorders were found for ZC3H11B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZC3H11B Gene

Publications for ZC3H11B Gene

  1. Association between Ocular Axial Length-Related Genes and High Myopia in a Han Chinese Population. (PMID: 26485405) Li YT … Wu J (Ophthalmologica. Journal international d'ophtalmologie. International journal of ophthalmology. Zeitschrift fur Augenheilkunde 2016) 3 60
  2. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 60
  3. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng CY … Baird PN (American journal of human genetics 2013) 3 60
  4. Genetic variants on chromosome 1q41 influence ocular axial length and high myopia. (PMID: 22685421) Fan Q … Saw SM (PLoS genetics 2012) 3 60
  5. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 45 60

Products for ZC3H11B Gene

Sources for ZC3H11B Gene

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