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Aliases for ZC3H10 Gene

Aliases for ZC3H10 Gene

  • Zinc Finger CCCH-Type Containing 10 2 3
  • Zinc Finger CCCH-Type Domain Containing 10 2 3
  • ZC3HDC10 3 4
  • Zinc Finger CCCH Domain-Containing Protein 10 3

External Ids for ZC3H10 Gene

Previous Symbols for ZC3H10 Gene

  • ZC3HDC10

Summaries for ZC3H10 Gene

GeneCards Summary for ZC3H10 Gene

ZC3H10 (Zinc Finger CCCH-Type Containing 10) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC3H10 Gene

Genomics for ZC3H10 Gene

Genomic Location for ZC3H10 Gene

Start:
56,118,159 bp from pter
End:
56,127,514 bp from pter
Size:
9,356 bases
Orientation:
Plus strand

Genomic View for ZC3H10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZC3H10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC3H10 Gene

Regulatory Elements for ZC3H10 Gene

Proteins for ZC3H10 Gene

  • Protein details for ZC3H10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96K80-ZC3HA_HUMAN
    Recommended name:
    Zinc finger CCCH domain-containing protein 10
    Protein Accession:
    Q96K80
    Secondary Accessions:

    Protein attributes for ZC3H10 Gene

    Size:
    434 amino acids
    Molecular mass:
    46052 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZC3H10 Gene

Proteomics data for ZC3H10 Gene at MOPED

Post-translational modifications for ZC3H10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZC3H10 Gene

No data available for DME Specific Peptides for ZC3H10 Gene

Domains for ZC3H10 Gene

Gene Families for ZC3H10 Gene

HGNC:
  • ZC3H :Zinc fingers, CCCH-type domain containing

Protein Domains for ZC3H10 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

ZC3HA_HUMAN
Similarity:
  • Contains 3 C3H1-type zinc fingers.:
    • Q96K80
genes like me logo Genes that share domains with ZC3H10: view

Function for ZC3H10 Gene

Gene Ontology (GO) - Molecular Function for ZC3H10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0044822 poly(A) RNA binding IDA 22658674
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZC3H10: view

Phenotypes for ZC3H10 Gene

GenomeRNAi human phenotypes for ZC3H10:
genes like me logo Genes that share phenotypes with ZC3H10: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZC3H10 Gene

Localization for ZC3H10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZC3H10 Gene COMPARTMENTS Subcellular localization image for ZC3H10 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for ZC3H10 Gene

Pathways for ZC3H10 Gene

SuperPathways for ZC3H10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZC3H10 Gene

None

No data available for Pathways by source for ZC3H10 Gene

Transcripts for ZC3H10 Gene

Unigene Clusters for ZC3H10 Gene

Zinc finger CCCH-type containing 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZC3H10 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b
SP1: - - -
SP2: -
SP3: - -
SP4: -

Relevant External Links for ZC3H10 Gene

GeneLoc Exon Structure for
ZC3H10
ECgene alternative splicing isoforms for
ZC3H10

Expression for ZC3H10 Gene

mRNA expression in normal human tissues for ZC3H10 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ZC3H10 Gene

SOURCE GeneReport for Unigene cluster for ZC3H10 Gene Hs.632706

genes like me logo Genes that share expressions with ZC3H10: view

Orthologs for ZC3H10 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZC3H10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZC3H10 36
  • 99.62 (n)
  • 99.77 (a)
ZC3H10 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZC3H10 36
  • 92.78 (n)
  • 96.54 (a)
ZC3H10 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZC3H10 36
  • 93.24 (n)
  • 96.54 (a)
ZC3H10 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zc3h10 36
  • 88.17 (n)
  • 96.54 (a)
Zc3h10 16
Zc3h10 37
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zc3h10 36
  • 89.09 (n)
  • 95.85 (a)
chicken
(Gallus gallus)
Aves ZC3H10 36
  • 74.32 (n)
  • 83.16 (a)
ZC3H10 37
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZC3H10 37
  • 83 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15636 36
tropical clawed frog
(Silurana tropicalis)
Amphibia zc3h10 36
  • 68.5 (n)
  • 74.45 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.19352 36
zc3h10 36
  • 57.58 (n)
  • 56.25 (a)
zc3h10 37
  • 55 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y53G8AR.9 37
  • 32 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 32 (a)
OneToMany
CSA.2589 37
  • 16 (a)
OneToMany
Species with no ortholog for ZC3H10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ZC3H10 Gene

ENSEMBL:
Gene Tree for ZC3H10 (if available)
TreeFam:
Gene Tree for ZC3H10 (if available)

Paralogs for ZC3H10 Gene

Selected SIMAP similar genes for ZC3H10 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ZC3H10: view

No data available for Paralogs for ZC3H10 Gene

Variants for ZC3H10 Gene

Sequence variations from dbSNP and Humsavar for ZC3H10 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1048539 -- 56,121,978(+) GAACT(A/G)GGACA utr-variant-3-prime
rs3802996 -- 56,118,474(+) GACCC(C/T)GCATC intron-variant
rs11171745 -- 56,118,887(+) AACCC(A/C)TCCTC intron-variant
rs11171746 -- 56,122,372(+) GGGAA(A/G)GCTGG utr-variant-3-prime
rs12298136 -- 56,122,986(+) TGAAG(C/G)CTTCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for ZC3H10 Gene

Variant ID Type Subtype PubMed ID
nsv832427 CNV Loss 17160897

Relevant External Links for ZC3H10 Gene

HapMap Linkage Disequilibrium report
ZC3H10
Human Gene Mutation Database (HGMD)
ZC3H10

Disorders for ZC3H10 Gene

Relevant External Links for ZC3H10

Genetic Association Database (GAD)
ZC3H10
Human Genome Epidemiology (HuGE) Navigator
ZC3H10
genes like me logo Genes that share disorders with ZC3H10: view

No data available for UniProtKB/Swiss-Prot for ZC3H10 Gene

Publications for ZC3H10 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 49
  4. Gene trapping identifies a putative tumor suppressor and a new inducer of cell migration. (PMID: 18814840) Guardiola-Serrano F. … Altschmied J. (Biochem. Biophys. Res. Commun. 2008) 2 3
  5. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3

Products for ZC3H10 Gene

Sources for ZC3H10 Gene

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