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Aliases for ZC2HC1B Gene

Aliases for ZC2HC1B Gene

  • Zinc Finger, C2HC-Type Containing 1B 2 3
  • Family With Sequence Similarity 164, Member B 2 3
  • C6orf94 3 4
  • FAM164B 3 4
  • Zinc Finger C2HC Domain-Containing Protein 1B 3
  • Chromosome 6 Open Reading Frame 94 2
  • Protein FAM164B 3
  • DJ468K18.5 3

External Ids for ZC2HC1B Gene

Previous Symbols for ZC2HC1B Gene

  • FAM164B
  • C6orf94

Summaries for ZC2HC1B Gene

GeneCards Summary for ZC2HC1B Gene

ZC2HC1B (Zinc Finger, C2HC-Type Containing 1B) is a Protein Coding gene. An important paralog of this gene is ZC2HC1A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZC2HC1B Gene

Genomics for ZC2HC1B Gene

Genomic Location for ZC2HC1B Gene

Start:
143,864,436 bp from pter
End:
143,938,356 bp from pter
Size:
73,921 bases
Orientation:
Plus strand

Genomic View for ZC2HC1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZC2HC1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZC2HC1B Gene

No data available for Regulatory Elements for ZC2HC1B Gene

Proteins for ZC2HC1B Gene

  • Protein details for ZC2HC1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TFG8-ZC21B_HUMAN
    Recommended name:
    Zinc finger C2HC domain-containing protein 1B
    Protein Accession:
    Q5TFG8
    Secondary Accessions:
    • B2RUZ7
    • Q5TFG9

    Protein attributes for ZC2HC1B Gene

    Size:
    222 amino acids
    Molecular mass:
    24665 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI21444.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI21445.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ZC2HC1B Gene

Proteomics data for ZC2HC1B Gene at MOPED

Post-translational modifications for ZC2HC1B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZC2HC1B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZC2HC1B Gene

Domains for ZC2HC1B Gene

Gene Families for ZC2HC1B Gene

HGNC:
  • ZC2HC :Zinc fingers, C2HC-type containing

Protein Domains for ZC2HC1B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

ZC21B_HUMAN
Family:
  • Belongs to the ZC2HC1 family.:
    • Q5TFG8
Similarity:
  • Contains 1 C2HC-type zinc finger.:
    • Q5TFG8
genes like me logo Genes that share domains with ZC2HC1B: view

Function for ZC2HC1B Gene

Gene Ontology (GO) - Molecular Function for ZC2HC1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZC2HC1B: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZC2HC1B Gene

Localization for ZC2HC1B Gene

No data available for Gene Ontology (GO) - Cellular Components for ZC2HC1B Gene

Pathways for ZC2HC1B Gene

SuperPathways for ZC2HC1B Gene

No Data Available

Interacting Proteins for ZC2HC1B Gene

Gene Ontology (GO) - Biological Process for ZC2HC1B Gene

None

No data available for Pathways by source for ZC2HC1B Gene

Transcripts for ZC2HC1B Gene

mRNA/cDNA for ZC2HC1B Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZC2HC1B Gene

Zinc finger, C2HC-type containing 1B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZC2HC1B Gene

No ASD Table

Relevant External Links for ZC2HC1B Gene

GeneLoc Exon Structure for
ZC2HC1B
ECgene alternative splicing isoforms for
ZC2HC1B

Expression for ZC2HC1B Gene

mRNA expression in normal human tissues for ZC2HC1B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ZC2HC1B Gene

This gene is overexpressed in Testis (43.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZC2HC1B Gene

SOURCE GeneReport for Unigene cluster for ZC2HC1B Gene Hs.121188

genes like me logo Genes that share expressions with ZC2HC1B: view

Orthologs for ZC2HC1B Gene

This gene was present in the common ancestor of animals.

Orthologs for ZC2HC1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZC2HC1B 36
  • 99.1 (n)
  • 98.65 (a)
ZC2HC1B 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZC2HC1B 36
  • 86.76 (n)
  • 84.93 (a)
ZC2HC1B 37
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZC2HC1B 36
  • 87 (n)
  • 84.4 (a)
ZC2HC1B 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zc2hc1b 36
  • 79.84 (n)
  • 76.74 (a)
Zc2hc1b 16
Zc2hc1b 37
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZC2HC1B 37
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZC2HC1B 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zc2hc1b 36
  • 79.84 (n)
  • 77.33 (a)
chicken
(Gallus gallus)
Aves C3H6ORF94 36
  • 67.7 (n)
  • 64.2 (a)
ZC2HC1B 37
  • 47 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T03G11.3 36
  • 52.04 (n)
  • 46.76 (a)
T03G11.3 37
  • 21 (a)
OneToMany
Species with no ortholog for ZC2HC1B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ZC2HC1B Gene

ENSEMBL:
Gene Tree for ZC2HC1B (if available)
TreeFam:
Gene Tree for ZC2HC1B (if available)

Paralogs for ZC2HC1B Gene

Paralogs for ZC2HC1B Gene

Selected SIMAP similar genes for ZC2HC1B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZC2HC1B: view

Variants for ZC2HC1B Gene

Sequence variations from dbSNP and Humsavar for ZC2HC1B Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs15603 -- 143,938,291(+) TTTTT(A/T)TTTAC utr-variant-3-prime
rs761540 -- 143,895,408(+) TGCAC(A/C)TGCCT intron-variant
rs761541 -- 143,895,836(+) TCCTC(A/G)AAAGA intron-variant
rs764667 -- 143,895,942(+) ACTCC(A/G)ATTGA intron-variant
rs1079874 -- 143,928,405(+) ttgtc(A/G)aatat intron-variant

Relevant External Links for ZC2HC1B Gene

HapMap Linkage Disequilibrium report
ZC2HC1B

No data available for Structural Variations from Database of Genomic Variants (DGV) for ZC2HC1B Gene

Disorders for ZC2HC1B Gene

No disorders were found for ZC2HC1B Gene.

No data available for UniProtKB/Swiss-Prot for ZC2HC1B Gene

Publications for ZC2HC1B Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZC2HC1B Gene

Sources for ZC2HC1B Gene

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