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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZBTB9 Gene

protein-coding   GIFtS: 46
GCID: GC06P033422

Zinc Finger And BTB Domain Containing 9

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger And BTB Domain Containing 91 2
ZNF9192
Zinc Finger And BTB Domain-Containing Protein 92

External Ids:    HGNC: 283231   Entrez Gene: 2215042   Ensembl: ENSG000002135887   UniProtKB: Q96C003   

Export aliases for ZBTB9 gene to outside databases

Previous GC identifers: GC06P033469 GC06P033496 GC06P033530 GC06P033164


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZBTB9 Gene: 
ZBTB9 (zinc finger and BTB domain containing 9) is a protein-coding gene. Diseases associated with ZBTB9 include systemic lupus erythematosus, and lupus erythematosus. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZBTB34.

UniProtKB/Swiss-Prot: ZBTB9_HUMAN, Q96C00
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NT_167249.1  NC_000006.11  NC_018917.2  NT_007592.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZBTB9 gene promoter:
         E2F-3a   E2F-4   E2F-5   Sp1   p300   Olf-1   E2F-2   E2F   E2F-1   Zic3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZBTB9 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZBTB9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZBTB9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.32   Ensembl cytogenetic band:  6p21.32   HGNC cytogenetic band: 6p21.31

ZBTB9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB9 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P033422:  view genomic region     (about GC identifiers)

Start:
33,422,356 bp from pter      End:
33,425,325 bp from pter
Size:
2,970 bases      Orientation:
plus strand

1 alternative location:
Chr6+,NT_167249 4,902,600-4,905,565     

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZBTB9_HUMAN, Q96C00 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 9  
Size: 473 amino acids; 50602 Da
Subcellular location: Nucleus (Potential)
Secondary accessions: A2AB19

Explore the universe of human proteins at neXtProt for ZBTB9: NX_Q96C00

Explore proteomics data for ZBTB9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96C00

  • ZBTB9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZBTB9 Protein Expression
    REFSEQ proteins: NP_689948.1  
    ENSEMBL proteins: 
     ENSP00000378503  

    Human Recombinant Protein Products for ZBTB9: 
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    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for ZBTB9 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--
    GO:0005739mitochondrion IDA--

    ZBTB9 for ontologies           About GeneDecksing



    ZBTB9 Antibody Products: 
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    BTBD: BTB/POZ domain containing
    ZNF: Zinc fingers, C2H2-type

    5/6 InterPro protein domains (see all 6):
     IPR015880 Znf_C2H2-like
     IPR011333 BTB/POZ_fold
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR013069 BTB_POZ
     IPR000210 BTB/POZ-like

    Graphical View of Domain Structure for InterPro Entry Q96C00

    ProtoNet protein and cluster: Q96C00

    1 Blocks protein domain: IPB000210 BTB/POZ domain

    UniProtKB/Swiss-Prot: ZBTB9_HUMAN, Q96C00
    Similarity: Contains 1 BTB (POZ) domain
    Similarity: Contains 2 C2H2-type zinc fingers


    ZBTB9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZBTB9_HUMAN, Q96C00
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding ----
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZBTB9 for ontologies           About GeneDecksing


    Animal Models:
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    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidZBTB9 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZBTB9

    STRING Interaction Network Preview (showing 5 interactants - click image to see 19)

    5/22 Interacting proteins for ZBTB9 (Q96C003 ENSP000003785034) via UniProtKB, MINT, STRING, and/or I2D (see all 22)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MED19A0JLT23, ENSP000003373404STRING: ENSP00000337340 I2D: score=1 
    NFKB1P198383, ENSP000002265744I2D: score=1 STRING: ENSP00000226574
    NR3C1P041503, ENSP000002315094I2D: score=1 STRING: ENSP00000231509
    PPARGC1BQ86YN63, ENSP000003126494I2D: score=1 STRING: ENSP00000312649
    ZFYP080483, ENSP000001550934I2D: score=1 STRING: ENSP00000155093
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    ZBTB9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZBTB9

    Search CenterWatch for drugs/clinical trials and news about ZBTB9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZBTB9 gene: 
    NM_152735.3  

    Unigene Cluster for ZBTB9:

    Zinc finger and BTB domain containing 9
    Hs.591805  [show with all ESTs]
    Unigene Representative Sequence: NM_152735
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000395064(uc003oeq.3)
    miRNA
    Products:
         
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    8/38 QIAGEN miScript miRNA Assays for microRNAs that regulate ZBTB9 (see all 38):
    hsa-miR-520e hsa-miR-302d hsa-miR-106a hsa-miR-15a hsa-miR-548m hsa-miR-372 hsa-miR-424 hsa-miR-93
    SwitchGear 3'UTR luciferase reporter plasmidZBTB9 3' UTR sequence
    Inhib. RNA
    Products:
         
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZBTB9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZBTB9
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                         Customized lentivirus expression plasmids for stable overexpression of ZBTB9 
    Primer
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    OriGene qPCR primer pairs and template standards for ZBTB9
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZBTB9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZBTB9

    Additional mRNA sequence: 

    AK122644.1 AK313571.1 BC014978.1 BC048321.1 

    5 DOTS entries:

    DT.313158  DT.91967851  DT.95130625  DT.121330539  DT.95272790 

    24/163 AceView cDNA sequences (see all 163):

    BC048321 AB067525 AI791755 AW966256 BM142222 BQ920923 BU739879 AK122644 
    BM713841 AL713634 AA338578 AA004791 BM971599 AW070944 Z41757 BX282051 
    BC014978 BF935573 AW769465 AK094225 CB852474 AA496961 BE048193 BX329219 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZBTB9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGGAATTGAA
    ZBTB9 Expression
    About this image


    See ZBTB9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZBTB9

    SOURCE GeneReport for Unigene cluster: Hs.591805
        SABiosciences Custom PCR Arrays for ZBTB9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZBTB9 gene from 3/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zbtb91 , 5 zinc finger and BTB domain containing 91, 5 82.68(n)1
    79.26(a)1
      17 (13.60 cM)5
    4741561  NM_001005916.21  NP_001005916.11 
     269731675 
    lizard
    (Anolis carolinensis)
    Reptilia ZBTB96
    Uncharacterized protein
    49(a)
    1 ↔ 1
    GL343884.1(98147-99478)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.126622 Xenopus laevis transcribed sequence with weak similarity more 75.56(n)    BJ083589.1 


    ENSEMBL Gene Tree for ZBTB9 (if available)
    TreeFam Gene Tree for ZBTB9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZBTB9 gene
    ZBTB342  ZBTB222  NACC12  ZBTB452  ZBTB62  NACC22  ZBTB372  ZBTB262  
    ZBTB432  ZBTB122  ZBTB202  

    ZBTB9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/100 SNPs in ZBTB9 are shown (see all 100)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1511147091,2
    C--33421973(+) GGAAG-/ACACAAA 1 -- us2k10--------
    rs1175298131,2
    C,F--33422120(+) CCGACC/AGGGCT 1 -- us2k11Minor allele frequency- A:0.03EA 120
    rs27723851,2
    C,F,A,H--33422150(+) CTCTCG/TGTCCT 1 -- us2k114Minor allele frequency- T:0.09NS EA NA WA 2096
    rs1830261201,2
    --33422245(+) TCCTCA/GTCTGC 1 -- us2k10--------
    rs1997858731,2
    C--33422310(+) CTAGCC/TCCGCC 1 -- us2k10--------
    rs1444072621,2
    --33422338(+) GTGTCC/TGGCGG 1 -- us2k10--------
    rs22747301,2
    C,F,A,H--33422545(-) GCCCAG/CAACAG 1 -- ut5113Minor allele frequency- C:0.27EA NS NA WA 2340
    rs796342611,2
    C,F--33422606(+) GGCTGG/AAAGTT 1 -- int12Minor allele frequency- A:0.07NA EA 240
    rs1878847201,2
    --33422621(+) CCCCTA/GTTGGT 1 -- int10--------
    rs1449405491,2
    C--33422641(+) TGGTG-/GTTGTTGT 1 -- int10--------

    HapMap Linkage Disequilibrium report for ZBTB9 (33422356 - 33425325 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZBTB9:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv830637CNV Loss17160897

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for ZBTB9:    About MalaCards
    systemic lupus erythematosus    lupus erythematosus


    ZBTB9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZBTB9
    Human Genome Epidemiology (HuGE) Navigator: ZBTB9 (2 documents)

    Export disorders for ZBTB9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZBTB9 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with ZBTB9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genome-wide association study of smoking behaviours i n patients with COPD. (PubMed id 21685187)1, 4 Siedlinski M....Silverman E.K. (2011)
    2. High-density SNP screening of the major histocompatib ility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PubMed id 19851445)1, 4 Barcellos L.F....Criswell L.A. (2009)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    6. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. Comparative proteomic analysis identifies a role for S UMO in protein quality control. (PubMed id 21693764)1 Tatham M.H....Hay R.T. (2011)
    9. An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142)1 Ravasi T....Hayashizaki Y. (2010)
    10. System-wide changes to SUMO modifications in response to heat shock. (PubMed id 19471022)1 Golebiowski F....Hay R.T. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 221504 HGNC: 28323 AceView: ZBTB9 Ensembl:ENSG00000213588 euGenes: HUgn221504
    ECgene: ZBTB9 H-InvDB: ZBTB9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZBTB9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZBTB9 gene:
    Search GeneIP for patents involving ZBTB9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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