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ZBTB6 Gene

protein-coding GIFtS: 50

GC09M124710

zinc finger and BTB domain containing 6
(Previous name: zinc finger protein 482 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: ZNF482)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
OTTHUMP00000022074 ^²
ZID ^¹, ², ³
ZNF482 ^², ³

Descriptions
Zinc finger protein 482 ^¹, ², ³
Zinc finger protein with interaction domain ^², ³
zinc finger and BTB domain containing 6 ^²

External Ids
HGNC: 16764¹
Entrez Gene: 10773²
UniProtKB: Q15916³
Ensembl: ENSG00000186130⁷

Search outside databases for aliases for ZBTB6 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZBTB6_HUMAN, Q15916

Function: May be involved in transcriptional regulation

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the ZBTB6 gene

Entrez Gene cytogenetic band: 9q33.2 Ensembl cytogenetic band: 9q33.2 HGNC cytogenetic band: 9q33.1-q33.3

ZBTB6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09M124710: (about GC identifiers)

Start:	124,710,150 bp from pter
End:	124,715,430 bp from pter
Size:	5,281 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000009.10 NT_008470.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ZBTB6_HUMAN, Q15916 (See protein sequence)

Recommended Name: Zinc finger and BTB domain-containing protein 6

Size: 424 amino acids; 48236 Da

Subcellular location: Nucleus

REFSEQ proteins: NP_006617.1

ENSEMBL proteins:

ENSP00000362763

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (ZBTB6)
	Human Recombinant Proteins from Abnova (ZNF482)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	IEA	--
GO:0005634	nucleus	TAS	7958847

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Antibodies for ZBTB6:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for ZBTB6
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (ZBTB6), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (ZNF482)
	Novus Biologicals Antibodies for ZBTB6

Assays for ZBTB6:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q15916

ProtoNet protein and cluster: Q15916

2 Blocks protein families:

IPB000210 BTB/POZ domain

IPB007086 C2H2-type zinc finger signature

UniProtKB/Swiss-Prot: ZBTB6_HUMAN, Q15916

Similarity: Contains 1 BTB (POZ) domain

Similarity: Contains 4 C2H2-type zinc fingers

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZBTB6)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ZNF482)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006626

Applied Biosystems Silencer® siRNAs for ZBTB6

Sigma-Aldrich siRNA and siRNA Panels for ZBTB6

Sigma-Aldrich shRNA for ZBTB6

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for ZBTB6
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_006626
Myc/DDK tagged cDNA clone in CMV expression vector: NM_006626
untagged cDNA clone in CMV expression vector: NM_006626

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_006626

UniProtKB/Swiss-Prot: ZBTB6_HUMAN, Q15916

Function: May be involved in transcriptional regulation

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	TAS	7958847
GO:0005515	protein binding	TAS	7958847
GO:0008270	zinc ion binding	IEA	--
GO:0046872	metal ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

5 Interacting proteins for ZBTB6 (ENSP00000362763³ Q15916²) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ATF7IP	Q6VMQ6²	MINT-61893
SKIL	P12757²	MINT-61642
NCOR2	ENSP00000348551³	STRING (score=.796)
NCOR1	ENSP00000268712³	STRING (score=.788)
BCL6	ENSP00000232014³	STRING (score=.708)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006350	transcription	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ZBTB6

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZBTB6)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ZNF482)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006626

Sigma-Aldrich siRNA and siRNA Panels for ZBTB6

Sigma-Aldrich shRNA for ZBTB6

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_006626

REFSEQ mRNAs for ZBTB6 gene:

NM_006626.4

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_006626

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006626
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006626
                                 untagged cDNA clone in CMV expression vector: NM_006626

Additional cDNA sequence:

AK098650.1 AK292401.1 BC037282.2 CR607983.1 X82018.1

2 DOTS entries:

DT.407524 DT.100747947

24/43 AceView cDNA sequences (see all 43 ):

CK906108 AI521489 AA306080 AU280590 AU146846 NM_006626 CR607983 AK098650

AA397823 BC037282 BM127191 AL556347 AW630216 CF454193 AI683916 AU098898

CK906109 X82018 BM127474 BV185794 AL708874 BX094756 AL578630 BX390688

highest scoring ESTs for ZBTB6:

X82018 CB240612 BU960642 BX350442 AA306080 AI683916 AL708874 AU098898 AU128455 BC037282

Unigene Cluster for ZBTB6:

Zinc finger and BTB domain containing 6

Hs.654596 [show with all ESTs]

Unigene Representative Sequence: BC037282

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000373659

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ZBTB6 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for ZBTB6

¹ / ² / ³

4 probe-sets matching ZBTB6 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
34562_at²^{, 3}	U95-A	1	1.00	1.00	0.83	0.50	X82018	0.80	0.80	0.80	1
82926_at²^{, 3}	U95-D	1	1.00	1.00	0.79	1.50	AI683916	0.60	0.75	0.68	1
206098_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_006626	0.40	0.67	0.55	1
206098_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TTTACATAAG

SOURCE GeneReport for Unigene cluster: Hs.654596
UniProtKB/Swiss-Prot: ZBTB6_HUMAN, Q15916
Tissue specificity: Widely expressed with highest levels in brain

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ZBTB6 gene from 5/7 species (see all 7 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	ZBTB6¹	--	zinc finger and BTB domain containing 6	91.73(n) 96.22(a)	491343 XM_548464.2 XP_548464.2
chimpanzee (Pan troglodytes)	ZBTB6¹	--	zinc finger and BTB domain containing 6	99.92(n) 100(a)	473054 XM_528424.2 XP_528424.1
cow (Bos taurus)	ZBTB6¹	--	zinc finger and BTB domain containing 6	92.37(n) 94.58(a)	540218 NM_001076207.1 NP_001069675.1
rat (Rattus norvegicus)	Zbtb6¹	--	zinc finger and BTB domain containing 6	89.13(n) 90.31(a)	366029 XM_345345.3 XP_345346.3
mouse (Mus musculus)	Zbtb6^{1, 5}	2⁵	zinc finger and BTB domain containing 6^{1, 5}	89.91(n)¹ 92.67(a)¹	241322¹ NM_146253.4¹ NP_666365.1¹ AK044125⁵ AK050827⁵ (see all 8)

About this table Species with no ortholog for ZBTB6

ENSEMBL Gene Tree for ZBTB6

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ZBTB6 gene

ZBTB26² ZBTB12² ENSG00000180610²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/41 NCBI SNPs in ZBTB6 are shown (see all 41 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 32)

AB	SNP ID	Valid	Chr 9 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs2239539^1,2	A,C,F,H,O	124715380(-)	`TGCCGC/TGGAAT`	1	--	ut5¹ ese³		7		NA EU EA WA	560
	rs1147322^1,2	A,C,F,H,O	124715422(-)	`TTTTCC/TTCCAG`	1	--	ut5¹ ese³		9		EU EA WA NA	1926
	rs1147321^1,2	A,C,F,O	124712872(-)	`TATAAC/AGTTTG`	1	--	ut3¹		3		NA	126
	rs10985820^1,2	C,F,H	124711791(+)	`ATTCAA/GAATTT`	1	--	ut3¹		4		EU EA WA	418
--	rs9409264^1,2	A,C	124716411(+)	`tttgtA/Tttttt`	1	--	ng3¹		0	--	--	--	--
--	rs2596695^1,2	A,C	124717414(+)	`gccacC/Tgcgcc`	1	--	ng3¹		0	--	--	--	--
--	rs16912314^1,2	C,F	124711426(+)	`AAGATG/CCATCT`	1	--	ut3¹ ese³		3		NA	142
	rs6478580^1,2	C,H	124715980(+)	`CGCGTC/GTGTCA`	1	--	ng3¹		4		EU EA WA	392
--	rs2596694^1,2	A,C	124717093(+)	`ccgcgC/Tccggc`	1	--	ng3¹		0	--	--	--	--
--	rs6478579^1,2	C	124715976(+)	`ACGGCA/GCGTGT`	1	--	ng3¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for ZBTB6 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605976

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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7 PubMed articles for ZBTB6 gene:

The POZ domain: a conserved protein-protein interaction motif. (PubMed id 7958847)^{2, 3, 4} Bardwell V.J. and Treisman R. (1994)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Functional proteomics mapping of a human signaling pathway. (PubMed id 15231748)³ Colland F....Gauthier J.M. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants. (PubMed id 17442570)¹ Fang Y. and Spector D.L. (2007)
Insights into the molecular recognition of the 5'-GNN-3' family of DNA sequences by zinc finger domains. (PubMed id 11054286)¹ Dreier B....Barbas C.F. (2000)
The zebrafish egr1 gene encodes a highly conserved, zinc-finger transcriptional regulator. (PubMed id 7945937)¹ Drummond I.A....Sukhatme V.P. (1994)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 10773	HGNC: 16764	AceView: ZNF482	Ensembl:ENSG00000186130	euGenes: HUgn10773
ECgene: ZBTB6	H-InvDB: ZBTB6

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for ZBTB6
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for ZBTB6:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for ZBTB6-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for ZBTB6		Antibodies for ZBTB6
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for ZBTB6		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (ZNF482)
	Antibodies (ZNF482)
	Chimera RNAi (ZNF482)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

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ZBTB6 Gene

protein-coding GIFtS: 50

Aliases &
Descriptions
for ZBTB6

Summaries
for ZBTB6

Genomic Location
for ZBTB6

Proteins
for ZBTB6

Protein Domains/
Families
for ZBTB6

Gene Function
for ZBTB6

Pathways & Interactions
for ZBTB6

Drugs & Compounds
for ZBTB6

Transcripts
for ZBTB6

Expression
for ZBTB6

Orthologs
for ZBTB6

Paralogs
for ZBTB6

SNPs/Variants
for ZBTB6

Disorders & Mutations
for ZBTB6

Medical News
for ZBTB6

Publications
for ZBTB6

Search for ZBTB6

Genome Databases showing ZBTB6

Other Databases showing ZBTB6

Specialized Databases showing ZBTB6

Licensable Technologies
for ZBTB6

Services
for ZBTB6

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

ZBTB6 Gene

protein-coding GIFtS: 50

Aliases & Descriptionsfor ZBTB6

Summariesfor ZBTB6

Genomic Locationfor ZBTB6

Proteinsfor ZBTB6

Protein Domains/Familiesfor ZBTB6

Gene Functionfor ZBTB6

Pathways & Interactionsfor ZBTB6

Drugs & Compoundsfor ZBTB6

Transcriptsfor ZBTB6

Expression for ZBTB6

Orthologsfor ZBTB6

Paralogsfor ZBTB6

SNPs/Variantsfor ZBTB6

Disorders & Mutationsfor ZBTB6

Medical Newsfor ZBTB6

Publicationsfor ZBTB6

Search for ZBTB6

Genome Databases showing ZBTB6

Other Databases showing ZBTB6

Specialized Databases showing ZBTB6

Licensable Technologiesfor ZBTB6

Servicesfor ZBTB6

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for ZBTB6

Summaries
for ZBTB6

Genomic Location
for ZBTB6

Proteins
for ZBTB6

Protein Domains/
Families
for ZBTB6

Gene Function
for ZBTB6

Pathways & Interactions
for ZBTB6

Drugs & Compounds
for ZBTB6

Transcripts
for ZBTB6

Expression
for ZBTB6

Orthologs
for ZBTB6

Paralogs
for ZBTB6

SNPs/Variants
for ZBTB6

Disorders & Mutations
for ZBTB6

Medical News
for ZBTB6

Publications
for ZBTB6

Licensable Technologies
for ZBTB6

Services
for ZBTB6