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Aliases for ZBTB47 Gene

Aliases for ZBTB47 Gene

  • Zinc Finger And BTB Domain Containing 47 2 3
  • Zinc Finger Protein 651 2 3 4
  • ZNF651 3 4
  • Zinc Finger And BTB Domain-Containing Protein 47 3
  • KIAA1190 4

External Ids for ZBTB47 Gene

Previous Symbols for ZBTB47 Gene

  • ZNF651

Summaries for ZBTB47 Gene

GeneCards Summary for ZBTB47 Gene

ZBTB47 (Zinc Finger And BTB Domain Containing 47) is a Protein Coding gene. An important paralog of this gene is ZNF652.

UniProtKB/Swiss-Prot for ZBTB47 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB47 Gene

Genomics for ZBTB47 Gene

Genomic Location for ZBTB47 Gene

Start:
42,653,034 bp from pter
End:
42,667,580 bp from pter
Size:
14,547 bases
Orientation:
Plus strand

Genomic View for ZBTB47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZBTB47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB47 Gene

Regulatory Elements for ZBTB47 Gene

Proteins for ZBTB47 Gene

  • Protein details for ZBTB47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UFB7-ZBT47_HUMAN
    Recommended name:
    Zinc finger and BTB domain-containing protein 47
    Protein Accession:
    Q9UFB7
    Secondary Accessions:
    • H7BXD3
    • Q6ZSY6
    • Q8WTY8
    • Q9ULN0

    Protein attributes for ZBTB47 Gene

    Size:
    747 amino acids
    Molecular mass:
    82760 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH21855.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAB61386.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZBTB47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZBTB47 Gene

Proteomics data for ZBTB47 Gene at MOPED

Post-translational modifications for ZBTB47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZBTB47 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBTB47 Gene

Domains for ZBTB47 Gene

Gene Families for ZBTB47 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type
  • BTBD :BTB/POZ domain containing

UniProtKB/Swiss-Prot:

ZBT47_HUMAN
Domain:
  • Contains 1 BTB (POZ) domain.:
    • Q9UFB7
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q9UFB7
Similarity:
  • Contains 9 C2H2-type zinc fingers.:
    • Q9UFB7
genes like me logo Genes that share domains with ZBTB47: view

Function for ZBTB47 Gene

Molecular function for ZBTB47 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZBTB47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZBTB47: view

miRNA for ZBTB47 Gene

miRTarBase miRNAs that target ZBTB47

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZBTB47 Gene

Localization for ZBTB47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZBTB47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZBTB47 Gene COMPARTMENTS Subcellular localization image for ZBTB47 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZBTB47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZBTB47: view

Pathways for ZBTB47 Gene

SuperPathways for ZBTB47 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZBTB47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZBTB47: view

No data available for Pathways by source for ZBTB47 Gene

Transcripts for ZBTB47 Gene

mRNA/cDNA for ZBTB47 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(96) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBTB47 Gene

Zinc finger and BTB domain containing 47:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB47 Gene

No ASD Table

Relevant External Links for ZBTB47 Gene

GeneLoc Exon Structure for
ZBTB47
ECgene alternative splicing isoforms for
ZBTB47

Expression for ZBTB47 Gene

mRNA expression in normal human tissues for ZBTB47 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZBTB47 Gene

SOURCE GeneReport for Unigene cluster for ZBTB47 Gene Hs.409561

genes like me logo Genes that share expressions with ZBTB47: view

Orthologs for ZBTB47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZBTB47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZBTB47 37
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZBTB47 36
  • 88.31 (n)
  • 91.59 (a)
ZBTB47 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZBTB47 36
  • 87.95 (n)
  • 90.77 (a)
ZBTB47 37
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp651 16
Zfp651 37
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZBTB47 37
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZBTB47 37
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves ZBTB47 37
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZBTB47 37
  • 64 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.13314 36
zebrafish
(Danio rerio)
Actinopterygii zbtb47a 37
  • 54 (a)
OneToMany
zbtb47b 37
  • 94 (a)
OneToMany
Species with no ortholog for ZBTB47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZBTB47 Gene

ENSEMBL:
Gene Tree for ZBTB47 (if available)
TreeFam:
Gene Tree for ZBTB47 (if available)

Paralogs for ZBTB47 Gene

Paralogs for ZBTB47 Gene

Selected SIMAP similar genes for ZBTB47 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZBTB47: view

Variants for ZBTB47 Gene

Sequence variations from dbSNP and Humsavar for ZBTB47 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs82755 -- 42,657,875(+) CCTGC(G/T)ATGGT intron-variant
rs339717 -- 42,664,556(-) GTGGT(C/G)GGGAA reference, synonymous-codon
rs339718 -- 42,664,151(-) AGCCA(C/T)AGTGG intron-variant
rs339719 -- 42,662,360(-) GCAGG(A/G)TCCCA intron-variant
rs339720 -- 42,662,126(-) ATTGG(A/G)GGACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBTB47 Gene

Variant ID Type Subtype PubMed ID
nsv3781 CNV Insertion 18451855
nsv876731 CNV Loss 21882294

Relevant External Links for ZBTB47 Gene

HapMap Linkage Disequilibrium report
ZBTB47

Disorders for ZBTB47 Gene

No disorders were found for ZBTB47 Gene.

No data available for UniProtKB/Swiss-Prot for ZBTB47 Gene

Publications for ZBTB47 Gene

  1. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PMID: 10574461) Hirosawa M. … Ohara O. (DNA Res. 1999) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. CBFA2T3-ZNF651, like CBFA2T3-ZNF652, functions as a transcriptional corepressor complex. (PMID: 20116376) Kumar R. … Callen D.F. (FEBS Lett. 2010) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  5. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for ZBTB47 Gene

Sources for ZBTB47 Gene

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