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ZBTB42 Gene

protein-coding   GIFtS: 39
GCID: GC14P105266

Zinc Finger And BTB Domain Containing 42

  Search for ZBTB42
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger And BTB Domain Containing 421 2
ZNF9252 5
Zinc Finger And BTB Domain-Containing Protein 422

External Ids:    HGNC: 325501   Entrez Gene: 1001289272   Ensembl: ENSG000001796277   OMIM: 6139155   UniProtKB: B2RXF53   

Export aliases for ZBTB42 gene to outside databases

Previous GC identifers: GC00U921814 GC14U900765 GC14P104339 GC14P085448


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZBTB42 Gene:
ZBTB42 (zinc finger and BTB domain containing 42) is a protein-coding gene. An important paralog of this gene is ZBTB10.

UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
Function: Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling
multiprotein complexes (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000014.8  NC_018925.2  NT_026437.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZBTB42 gene promoter:
         CREB   ATF-2   deltaCREB   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ZBTB42

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZBTB42


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.33   Ensembl cytogenetic band:  14q32.33   HGNC cytogenetic band: 14q32.33

ZBTB42 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB42 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P105266:  view genomic region     (about GC identifiers)

Start:
105,266,933 bp from pter      End:
105,271,049 bp from pter
Size:
4,117 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 42  
Size: 422 amino acids; 46491 Da
Secondary accessions: B7ZW21

Explore the universe of human proteins at neXtProt for ZBTB42: NX_B2RXF5

Explore proteomics data for ZBTB42 at MOPED


See ZBTB42 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001131073.1  
ENSEMBL proteins: 
 ENSP00000450673   ENSP00000409107  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
BTBD: BTB/POZ domain containing
ZNF: Zinc fingers, C2H2-type

Selected InterPro protein domains (see all 6):
 IPR000210 BTB/POZ-like
 IPR015880 Znf_C2H2-like
 IPR011333 BTB/POZ_fold
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR013069 BTB_POZ

Graphical View of Domain Structure for InterPro Entry B2RXF5

ProtoNet protein and cluster: B2RXF5

UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family. ZBTB18 subfamily
Similarity: Contains 1 BTB (POZ) domain
Similarity: Contains 4 C2H2-type zinc fingers


Find genes that share domains with ZBTB42           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: ZBT42_HUMAN, B2RXF5
Function: Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling
multiprotein complexes (By similarity)

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0005515protein binding ----
GO:0046872metal ion binding IEA--
     
Find genes that share ontologies with ZBTB42           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
ZBT42_HUMAN, B2RXF5: Cytoplasm (By similarity). Nucleus. Nucleus, nucleoplasm (By similarity). Note=In skeletal
myofibers, highly enriched in subsynaptic nuclei at the neuromuscular junctions (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol2

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA--
GO:0005654nucleoplasm ISS--
GO:0005737cytoplasm IEA--

Find genes that share ontologies with ZBTB42           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for ZBTB42

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000122negative regulation of transcription from RNA polymerase II promoter IEA--
GO:0006351transcription, DNA-templated IEA--

Find genes that share ontologies with ZBTB42           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for ZBTB42 (ZBT42)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for ZBTB42 gene: 
NM_001137601.1  

Unigene Cluster for ZBTB42:

Zinc finger and BTB domain containing 42
Hs.170853  [show with all ESTs]
Unigene Representative Sequence: NM_001137601
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000555360(uc001ypp.3) ENST00000342537(uc021sem.1)
miRNA
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hsa-miR-513a-5p hsa-miR-27a hsa-miR-128 hsa-miR-3681* hsa-miR-3918 hsa-miR-370 hsa-miR-199a-5p hsa-miR-532-3p
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Additional mRNA sequence: 

AK125003.1 BC157833.1 BC171822.1 

1 DOTS entry:

DT.305758 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZBTB42 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCGACAGTAA
ZBTB42 Expression
About this image

ZBTB42 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ZBTB42 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.170853

UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
Tissue specificity: Expressed in skeletal muscle (at protein level)

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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for ZBTB42 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Zbtb421 , 5 zinc finger and BTB domain containing 421, 5 78.52(n)1
75.89(a)1
  12 (61.20 cM)5
3826391  NM_001100460.11  NP_001093930.11 
 1126788285 
chicken
(Gallus gallus)
Aves ZBTB426
zinc finger and BTB domain containing 42
53(a)
1 ↔ 1
5(51597808-51599649)
lizard
(Anolis carolinensis)
Reptilia ZBTB426
zinc finger and BTB domain containing 42
50(a)
1 ↔ 1
1(3890559-3892007)
zebrafish
(Danio rerio)
Actinopterygii ZBTB426
zinc finger and BTB domain containing 42
40(a)
1 ↔ 1
17(1019515-1043307) ENSDARG00000074455


ENSEMBL Gene Tree for ZBTB42 (if available)
TreeFam Gene Tree for ZBTB42 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for ZBTB42 gene
ZBTB102  ZBTB32  ZBTB182  ZBTB8A2  ZBTB442  ZBTB52  ENSG000002545532  ZBTB492  
HIC12  ZBTB482  MYNN2  HIC22  ZBTB462  ZBTB8B2  ZBTB172  
Selected SIMAP similar genes for ZBTB42 using alignment to 1 protein entry:     ZBT42_HUMAN(see all similar genes):
BACH2    ZNF72    ZFS-4    ZNF78L1    ZNF55    ZNF
KLHL32    ZFS-6    ZNF702P    kr-znf3    DKFZp686O1631    HZF16
ZFS-5    ZNF468    A-328A3.4    DKFZp434J0650    PLAGL1    ZBTB18

Find genes that share paralogs with ZBTB42           About GenesLikeMe


1 Pseudogenes.org Pseudogene for ZBTB42
PGOHUM00000257834


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ZBTB42 (see all 429)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 14 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs362149151,2
C,F--85448332(+) CCTGGG/AAGCGG 1 -- ut515Minor allele frequency- A:0.02EU NA NS WA 278
rs617597891,2
C,F--85448336(-) GCGCCC/TGCTCC 1 -- ut513Minor allele frequency- T:0.05NS WA 194
rs362149161,2
C,F--85448349(+) GCTGAC/TAGCGG 1 -- ut517Minor allele frequency- T:0.08EU NA NS CSA WA 284
rs617597871,2
C,F--85448359(-) ACCACG/AGTGGC 1 -- ut513Minor allele frequency- A:0.06NS WA 194
rs1396277371,2
C--85448455(+) CGGCAA/GCCCAT 1 -- int10--------
rs1451439481,2
C--85448524(+) GGCCCA/GGCCTG 1 -- int10--------
rs1475767801,2
--85448764(+) TTCCCA/GCCAGG 1 -- int10--------
rs1394893041,2
C--85448781(+) ACTGGC/TGCTCC 1 -- int10--------
rs1843015181,2
--85449050(+) CACCCC/TGGGAG 1 -- int10--------
rs1451484261,2
C--85449179(+) ATTCTC/TCTGGG 1 -- int10--------

HapMap Linkage Disequilibrium report for ZBTB42 (105266933 - 105271049 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10 variations for ZBTB42:    About this table    
Variant IDTypeSubtypePubMed ID
dgv2017n71CNV Loss21882294
dgv2016n71CNV Loss21882294
dgv2015n71CNV Loss21882294
nsv517038CNV Loss19592680
dgv2009n71CNV Loss21882294
nsv511544CNV Loss21212237
dgv2012n71CNV Loss21882294
nsv470677CNV Loss18288195
nsv902389CNV Loss21882294
nsv902407CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 613915    OMIM disorders: --


Find genes that share disorders with ZBTB42           About GenesLikeMe

Genetic Association Database (GAD): ZBTB42
Human Genome Epidemiology (HuGE) Navigator: ZBTB42 (3 documents)

Export disorders for ZBTB42 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ZBTB42 gene integrated from 10 sources:
(articles sorted by number of sources associating them with ZBTB42)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Characterization of the ZBTB42 gene in humans and mice. (PubMed id 21193930)1, 2 Devaney S.A.... Hoffman E.P. (Hum. Genet. 2011)
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (Am. J. Hum. Genet. 2009)
  5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (Nature 2003)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 100128927 HGNC: 32550 Ensembl:ENSG00000179627 euGenes: HUgn100128927 ECgene: ZBTB42
H-InvDB: ZBTB42

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ZBTB42 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ZBTB42 gene:
Search GeneIP for patents involving ZBTB42

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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