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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZBTB42 Gene

protein-coding   GIFtS: 39
GCID: GC14P105266

Zinc Finger And BTB Domain Containing 42

  Search for ZBTB42
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger And BTB Domain Containing 421 2
ZNF9252
Zinc Finger And BTB Domain-Containing Protein 422

External Ids:    HGNC: 325501   Entrez Gene: 1001289272   Ensembl: ENSG000001796277   OMIM: 6139155   UniProtKB: B2RXF53   

Export aliases for ZBTB42 gene to outside databases

Previous GC identifers: GC00U921814 GC14U900765 GC14P104339 GC14P085448


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZBTB42 Gene: 
ZBTB42 (zinc finger and BTB domain containing 42) is a protein-coding gene. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZBTB18.

UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
Function: Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling
multiprotein complexes (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.2  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZBTB42 gene promoter:
         CREB   ATF-2   deltaCREB   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ZBTB42

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZBTB42


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.33   Ensembl cytogenetic band:  14q32.33   HGNC cytogenetic band: 14q32.33

ZBTB42 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB42 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P105266:  view genomic region     (about GC identifiers)

Start:
105,266,933 bp from pter      End:
105,271,049 bp from pter
Size:
4,117 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 42  
Size: 422 amino acids; 46491 Da
Subcellular location: Cytoplasm (By similarity). Nucleus. Nucleus, nucleoplasm (By similarity). Note=In skeletal
myofibers, highly enriched in subsynaptic nuclei at the neuromuscular junctions (By similarity)
Secondary accessions: B7ZW21

Explore the universe of human proteins at neXtProt for ZBTB42: NX_B2RXF5

Explore proteomics data for ZBTB42 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_B2RXF5

  • ZBTB42 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZBTB42 Protein Expression
    REFSEQ proteins: NP_001131073.1  
    ENSEMBL proteins: 
     ENSP00000450673   ENSP00000409107  

    Human Recombinant Protein Products for ZBTB42: 
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    Cloud-Clone Corp. Proteins for ZBTB42 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005654nucleoplasm ISS--
    GO:0005737cytoplasm IEA--

    ZBTB42 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    BTBD: BTB/POZ domain containing
    ZNF: Zinc fingers, C2H2-type

    5/6 InterPro protein domains (see all 6):
     IPR015880 Znf_C2H2-like
     IPR011333 BTB/POZ_fold
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR013069 BTB_POZ
     IPR000210 BTB/POZ-like

    Graphical View of Domain Structure for InterPro Entry B2RXF5

    ProtoNet protein and cluster: B2RXF5

    UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family. ZBTB18 subfamily
    Similarity: Contains 1 BTB (POZ) domain
    Similarity: Contains 4 C2H2-type zinc fingers


    ZBTB42 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZBT42_HUMAN, B2RXF5
    Function: Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling
    multiprotein complexes (By similarity)

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding ----
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZBTB42 for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZBTB42

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter IEA--
    GO:0006351transcription, DNA-dependent IEA--

    ZBTB42 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZBTB42 (ZBT42)

    Search CenterWatch for drugs/clinical trials and news about ZBTB42 / ZBT42

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZBTB42 gene: 
    NM_001137601.1  

    Unigene Cluster for ZBTB42:

    Zinc finger and BTB domain containing 42
    Hs.170853  [show with all ESTs]
    Unigene Representative Sequence: NM_001137601
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000555360(uc001ypp.3) ENST00000342537(uc021sem.1)
    miRNA
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    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Additional mRNA sequence: 

    AK125003.1 BC157833.1 BC171822.1 

    1 DOTS entry:

    DT.305758 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZBTB42 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCGACAGTAA
    ZBTB42 Expression
    About this image


    See ZBTB42 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZBTB42

    SOURCE GeneReport for Unigene cluster: Hs.170853

    UniProtKB/Swiss-Prot: ZBT42_HUMAN, B2RXF5
    Tissue specificity: Expressed in skeletal muscle (at protein level)

        SABiosciences Custom PCR Arrays for ZBTB42
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB42

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZBTB42 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zbtb421 , 5 zinc finger and BTB domain containing 421, 5 78.84(n)1
    76.13(a)1
      12 (61.20 cM)5
    3826391  NM_001100460.11  NP_001093930.11 
     1126788285 
    chicken
    (Gallus gallus)
    Aves ZBTB421 zinc finger and BTB domain containing 42 67.15(n)
    62.8(a)
      428913  XM_426468.2  XP_426468.2 
    lizard
    (Anolis carolinensis)
    Reptilia ZBTB426
    Uncharacterized protein
    51(a)
    1 ↔ 1
    1(3890559-3892007)
    zebrafish
    (Danio rerio)
    Actinopterygii ZBTB426
    zinc finger and BTB domain containing 42
    40(a)
    1 ↔ 1
    17(1019695-1034160)


    ENSEMBL Gene Tree for ZBTB42 (if available)
    TreeFam Gene Tree for ZBTB42 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZBTB42 gene
    ZBTB182  ZBTB212  ZBTB32  ZBTB142  ZBTB7B2  ENSG000002545532  ZBTB462  ZBTB7C2  
    ZBTB8B2  ZBTB102  ZBTB8A2  ZBTB7A2  ZBTB52  ZBTB442  ZBTB492  ZBTB242  
    MYNN2  
    18/20 SIMAP similar genes for ZBTB42 using alignment to 1 protein entry:     ZBT42_HUMAN(see all similar genes):
    BACH2    ZNF72    ZFS-4    ZNF78L1    ZNF55    ZNF
    KLHL32    ZFS-6    ZNF702P    kr-znf3    DKFZp686O1631    HZF16
    ZFS-5    ZNF468    A-328A3.4    DKFZp434J0650    PLAGL1    ZBTB18

    ZBTB42 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZBTB42
    PGOHUM00000257834


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/429 SNPs in ZBTB42 are shown (see all 429)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs362149151,2
    C,F--85448332(+) CCTGGG/AAGCGG 1 -- ut515Minor allele frequency- A:0.02EU NA NS WA 278
    rs617597891,2
    C,F--85448336(-) GCGCCC/TGCTCC 1 -- ut513Minor allele frequency- T:0.05NS WA 194
    rs362149161,2
    C,F--85448349(+) GCTGAC/TAGCGG 1 -- ut517Minor allele frequency- T:0.08EU NA NS CSA WA 284
    rs617597871,2
    C,F--85448359(-) ACCACG/AGTGGC 1 -- ut513Minor allele frequency- A:0.06NS WA 194
    rs1396277371,2
    C--85448455(+) CGGCAA/GCCCAT 1 -- int10--------
    rs1451439481,2
    C--85448524(+) GGCCCA/GGCCTG 1 -- int10--------
    rs1475767801,2
    --85448764(+) TTCCCA/GCCAGG 1 -- int10--------
    rs1394893041,2
    C--85448781(+) ACTGGC/TGCTCC 1 -- int10--------
    rs1843015181,2
    --85449050(+) CACCCC/TGGGAG 1 -- int10--------
    rs1451484261,2
    C--85449179(+) ATTCTC/TCTGGG 1 -- int10--------

    HapMap Linkage Disequilibrium report for ZBTB42 (105266933 - 105271049 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10 variations for ZBTB42:    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv2017n71CNV Loss21882294
    dgv2016n71CNV Loss21882294
    dgv2015n71CNV Loss21882294
    nsv517038CNV Loss19592680
    dgv2009n71CNV Loss21882294
    nsv511544CNV Loss21212237
    dgv2012n71CNV Loss21882294
    nsv470677CNV Loss18288195
    nsv902389CNV Loss21882294
    nsv902407CNV Gain21882294

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZBTB42 for disorders           About MalaCards
    OMIM gene information: 613915    OMIM disorders: --


    ZBTB42 for disorders           About GeneDecksing

    Genetic Association Database (GAD): ZBTB42
    Human Genome Epidemiology (HuGE) Navigator: ZBTB42 (3 documents)

    Export disorders for ZBTB42 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZBTB42 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZBTB42)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of the ZBTB42 gene in humans and mice. (PubMed id 21193930)1, 2 Devaney S.A.... Hoffman E.P. (2011)
    2. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
    5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (2003)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 100128927 HGNC: 32550 Ensembl:ENSG00000179627 euGenes: HUgn100128927 ECgene: ZBTB42
    H-InvDB: ZBTB42

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZBTB42 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZBTB42 gene:
    Search GeneIP for patents involving ZBTB42

    GeneCards and IP:
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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