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Aliases for ZBTB40-IT1 Gene

Subcategory (RNA class) for ZBTB40-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBTB40-IT1 Gene

  • ZBTB40 Intronic Transcript 1 2 3 5
  • ZBTB40 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ZBTB40-IT1 Gene

Previous GeneCards Identifiers for ZBTB40-IT1 Gene

  • GC00U933731
  • GC01P022844

Summaries for ZBTB40-IT1 Gene

GeneCards Summary for ZBTB40-IT1 Gene

ZBTB40-IT1 (ZBTB40 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB40-IT1 Gene

Genomics for ZBTB40-IT1 Gene

Regulatory Elements for ZBTB40-IT1 Gene

Enhancers for ZBTB40-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G021893 2 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -612.2 -612180 22.6 HNRNPUL1 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 ZFP64 SIN3A YBX1 CDC42-IT1 ENSG00000271428 HSPG2 LDLRAD2 ZBTB40-IT1 EPHB2 RPL21P29 GC01M021883
GH01G022051 1.4 ENCODE dbSUPER 9.8 -464.2 -464167 3.1 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 LINC00339 CDC42-IT1 ENSG00000271428 ZBTB40-IT1 CDC42 LINC01635 LOC105376841
GH01G022023 1.4 ENCODE dbSUPER 9.8 -491.7 -491736 3.8 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 GLIS1 LINC00339 CDC42-IT1 ENSG00000271428 HSPG2 WNT4 ZBTB40-IT1 LINC01635
GH01G021779 1.4 ENCODE dbSUPER 9.8 -734.9 -734940 6.2 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 USP48 CDC42-IT1 ENSG00000271428 ZBTB40-IT1 RAP1GAP ENSG00000231978
GH01G021573 1.3 Ensembl ENCODE dbSUPER 9.8 -943.1 -943063 1.7 RB1 ARID4B RAD21 GTF3C2 GATA2 EGR1 ZNF366 FOS EGR2 SMARCA5 CDC42-IT1 ENSG00000271428 DDOST ALPL ZBTB40-IT1 LOC105376834 GC01P021552 GC01P021551
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZBTB40-IT1 Gene

Chromosome:
1
Start:
22,517,474 bp from pter
End:
22,519,708 bp from pter
Size:
2,235 bases
Orientation:
Plus strand

Genomic View for ZBTB40-IT1 Gene

Genes around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB40-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB40-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZBTB40-IT1 Gene

Proteins for ZBTB40-IT1 Gene

Post-translational modifications for ZBTB40-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB40-IT1 Gene

Domains & Families for ZBTB40-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB40-IT1 Gene

Function for ZBTB40-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB40-IT1 Gene

Localization for ZBTB40-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBTB40-IT1 Gene

Pathways & Interactions for ZBTB40-IT1 Gene

SuperPathways for ZBTB40-IT1 Gene

No Data Available

Interacting Proteins for ZBTB40-IT1 Gene

Gene Ontology (GO) - Biological Process for ZBTB40-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB40-IT1 Gene

Drugs & Compounds for ZBTB40-IT1 Gene

No Compound Related Data Available

Transcripts for ZBTB40-IT1 Gene

mRNA/cDNA for ZBTB40-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB40-IT1 Gene

No ASD Table

Relevant External Links for ZBTB40-IT1 Gene

GeneLoc Exon Structure for
ZBTB40-IT1
ECgene alternative splicing isoforms for
ZBTB40-IT1

Expression for ZBTB40-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBTB40-IT1 Gene

genes like me logo Genes that share expression patterns with ZBTB40-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB40-IT1 Gene

Orthologs for ZBTB40-IT1 Gene

Evolution for ZBTB40-IT1 Gene

ENSEMBL:
Gene Tree for ZBTB40-IT1 (if available)
TreeFam:
Gene Tree for ZBTB40-IT1 (if available)

No data available for Orthologs for ZBTB40-IT1 Gene

Paralogs for ZBTB40-IT1 Gene

No data available for Paralogs for ZBTB40-IT1 Gene

Variants for ZBTB40-IT1 Gene

Relevant External Links for ZBTB40-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB40-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZBTB40-IT1 Gene

Disorders for ZBTB40-IT1 Gene

No disorders were found for ZBTB40-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZBTB40-IT1 Gene

Publications for ZBTB40-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for ZBTB40-IT1 Gene

Sources for ZBTB40-IT1 Gene

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