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Aliases for ZBTB40-IT1 Gene

Subcategory (RNA class) for ZBTB40-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBTB40-IT1 Gene

  • ZBTB40 Intronic Transcript 1 2 3 5
  • ZBTB40 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ZBTB40-IT1 Gene

Previous GeneCards Identifiers for ZBTB40-IT1 Gene

  • GC00U933731
  • GC01P022844

Summaries for ZBTB40-IT1 Gene

GeneCards Summary for ZBTB40-IT1 Gene

ZBTB40-IT1 (ZBTB40 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB40-IT1 Gene

Genomics for ZBTB40-IT1 Gene

Regulatory Elements for ZBTB40-IT1 Gene

Enhancers for ZBTB40-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F021893 1.7 FANTOM5 Ensembl ENCODE 18 -612.2 -612180 22.6 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 SIN3A YBX1 FOS KLF13 ZBTB40-IT1 CDC42-IT1 ENSG00000271428 HSPG2 LDLRAD2 NBPF2P EPHB2 RPL21P29 GC01M021883
GH01F023018 1.2 ENCODE 18.8 +502.5 502451 3.0 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ELOA RPL11 CDC42-IT1 ZBTB40-IT1 LINC01355 LACTBL1 ENSG00000271428 PNRC2 HTR1D KDM1A
GH01F021779 1.2 ENCODE 18.7 -734.9 -734940 6.2 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 CDC42-IT1 USP48 ENSG00000271428 ZBTB40-IT1 LDLRAD2 RAP1GAP ENSG00000231978
GH01F022023 1.2 ENCODE 18 -491.7 -491736 3.8 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 LINC00339 CDC42-IT1 ZBTB40-IT1 ENSG00000271428 HSPG2 WNT4 NBPF2P LINC01635
GH01F022037 1.7 FANTOM5 Ensembl ENCODE 9.9 -476.0 -475985 8.6 HDGF PKNOX1 CREB3L1 ARID4B ZNF121 GATA2 ZNF416 MIER2 REST ZNF623 LINC00339 ZBTB40 ZBTB40-IT1 NBPF2P HSPG2 LINC01635 CDC42-IT1 USP48 GC01M022038 CDC42
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZBTB40-IT1 Gene

Chromosome:
1
Start:
22,517,474 bp from pter
End:
22,519,708 bp from pter
Size:
2,235 bases
Orientation:
Plus strand

Genomic View for ZBTB40-IT1 Gene

Genes around ZBTB40-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB40-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB40-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ZBTB40-IT1 Gene

Proteins for ZBTB40-IT1 Gene

Post-translational modifications for ZBTB40-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB40-IT1 Gene

Domains & Families for ZBTB40-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB40-IT1 Gene

Function for ZBTB40-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB40-IT1 Gene

Localization for ZBTB40-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBTB40-IT1 Gene

Pathways & Interactions for ZBTB40-IT1 Gene

SuperPathways for ZBTB40-IT1 Gene

No Data Available

Interacting Proteins for ZBTB40-IT1 Gene

Gene Ontology (GO) - Biological Process for ZBTB40-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB40-IT1 Gene

Transcripts for ZBTB40-IT1 Gene

mRNA/cDNA for ZBTB40-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB40-IT1 Gene

No ASD Table

Relevant External Links for ZBTB40-IT1 Gene

GeneLoc Exon Structure for
ZBTB40-IT1
ECgene alternative splicing isoforms for
ZBTB40-IT1

Expression for ZBTB40-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZBTB40-IT1 Gene

genes like me logo Genes that share expression patterns with ZBTB40-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZBTB40-IT1 Gene

Orthologs for ZBTB40-IT1 Gene

Evolution for ZBTB40-IT1 Gene

ENSEMBL:
Gene Tree for ZBTB40-IT1 (if available)
TreeFam:
Gene Tree for ZBTB40-IT1 (if available)

No data available for Orthologs for ZBTB40-IT1 Gene

Paralogs for ZBTB40-IT1 Gene

No data available for Paralogs for ZBTB40-IT1 Gene

Variants for ZBTB40-IT1 Gene

Relevant External Links for ZBTB40-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB40-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ZBTB40-IT1 Gene

Disorders for ZBTB40-IT1 Gene

No disorders were found for ZBTB40-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZBTB40-IT1 Gene

Publications for ZBTB40-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for ZBTB40-IT1 Gene

Sources for ZBTB40-IT1 Gene

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