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ZBTB4 Gene

protein-coding GIFtS: 51

GC17M007303

zinc finger and BTB domain containing 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
KAISO-L1 ^¹, ², ³
KIAA1538 ^¹, ², ³, ⁵
OTTHUMP00000135276 ^²

Descriptions
KAISO-like zinc finger protein 1 ^², ³
zinc finger and BTB domain containing 4 ^²

External Ids
HGNC: 23847¹
Entrez Gene: 57659²
UniProtKB: Q9P1Z0³
Ensembl: ENSG00000174282⁷

Search outside databases for aliases for ZBTB4 gene

Previous GC identifer: GC17M007563

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0

Function: May be involved in transcriptional regulation

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the ZBTB4 gene

Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.2

ZBTB4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17M007303: (about GC identifiers)

Start:	7,303,421 bp from pter
End:	7,328,241 bp from pter
Size:	24,821 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000017.9 NT_010718.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0 (See protein sequence)

Recommended Name: Zinc finger and BTB domain-containing protein 4

Size: 1013 amino acids; 105114 Da

Subcellular location: Nucleus (Potential)

Secondary accessions: Q7Z697 Q86XJ4 Q8N4V8

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins (2 alternative transcripts):

NP_001122305.1 NP_065950.2

ENSEMBL proteins:

ENSP00000369973 ENSP00000307858

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (ZBTB4)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005622	intracellular	IEA	--
GO:0005634	nucleus	IEA	--

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Antibodies for ZBTB4:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (ZBTB4), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for ZBTB4

Assays for ZBTB4:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9P1Z0

ProtoNet protein and cluster: Q9P1Z0

1 Blocks protein family: IPB000210 BTB/POZ domain

UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0

Similarity: Contains 1 BTB (POZ) domain

Similarity: Contains 6 C2H2-type zinc fingers

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZBTB4)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_020899

Applied Biosystems Silencer® siRNAs for ZBTB4

Sigma-Aldrich siRNA and siRNA Panels for ZBTB4

Sigma-Aldrich shRNA for ZBTB4

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001128833
Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001128833
untagged cDNA clones in CMV expression vector (see all 2): NM_001128833

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_020899

UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0

Function: May be involved in transcriptional regulation

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	IEA	--
GO:0005515	protein binding	IEA	--
GO:0008270	zinc ion binding	IEA	--
GO:0046872	metal ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for ZBTB4

1 Interacting protein for ZBTB4 (ENSP00000307858³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
--	ENSP00000362816³	STRING (score=.91)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006350	transcription	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ZBTB4

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ZBTB4)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_020899

Sigma-Aldrich siRNA and siRNA Panels for ZBTB4

Sigma-Aldrich shRNA for ZBTB4

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_001128833 NM_020899

REFSEQ mRNAs for ZBTB4 gene (2 alternative transcripts):

NM_001128833.1 NM_020899.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_001128833 NM_020899

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001128833
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001128833
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001128833

Additional cDNA sequence:

AB040971.2 AK027143.1 AK122826.1 AK122971.1 AY302699.1 BC015902.1 BC033259.1 BC043352.2

BC131774.1

10 DOTS entries:

DT.100819620 DT.456393 DT.99957914 DT.91882042 DT.120976070 DT.304966 DT.75156238 DT.95195736

DT.95285201 DT.95305021

24/273 AceView cDNA sequences (see all 273 ):

CB306760 BM692980 AY302699 F28370 AI185028 AW991664 AA617772 BM697291

AI669498 AW468104 AA375608 BU620047 AA338527 BQ880799 AK122826 AA255479

BE218908 BC033259 W37794 BM908383 CA395952 AW794402 BE327655 AI191330

highest scoring ESTs for ZBTB4:

BC043352 BQ427479 W51743 AA037440 AA092171 AA150142 AA152211 AA255479 AA256903 AA284243

Unigene Cluster for ZBTB4:

Zinc finger and BTB domain containing 4

Hs.35096 [show with all ESTs]

Unigene Representative Sequence: NM_020899

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000380599 ENST00000311403

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ZBTB4 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for ZBTB4

¹ / ² / ³

6 probe-sets matching ZBTB4 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
51253_at²^{, 3}	U95-B	1	1.00	1.00	0.98	1.00	W51743	0.80	1.00	0.91	1
64024_at²^{, 3}	U95-C	1	1.00	1.00	0.97	1.00	AA400641	0.60	1.00	0.82	1
225629_s_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AI669498	0.60	1.00	0.82	1
227047_x_at²^{, 3}	U133-B	1	1.00	1.00	--	--	N63748	0.60	1.00	0.82	1
225629_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
227047_x_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks ZBTB4 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
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About these images

CGAP SAGE TAG: TTCCCTGGGA

SOURCE GeneReport for Unigene cluster: Hs.35096

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ZBTB4 gene from 4 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	ZBTB4¹	--	zinc finger and BTB domain containing 4	86.39(n) 90.78(a)	489474 XM_546592.2 XP_546592.2
chimpanzee (Pan troglodytes)	ZBTB4¹	--	zinc finger and BTB domain containing 4	99.31(n) 99.31(a)	454462 XM_511299.2 XP_511299.2
rat (Rattus norvegicus)	Zbtb4¹	--	zinc finger and BTB domain containing 4	85.73(n) 88.38(a)	287441 XM_220612.4 XP_220612.4
mouse (Mus musculus)	Zbtb4^{1, 5}	11⁵	zinc finger and BTB domain containing 4^{1, 5}	85.81(n)¹ 88.92(a)¹	75580¹ NM_029348.1¹ NP_083624.1¹ AK009517⁵ AK020335⁵ (see all 16)

About this table Species with no ortholog for ZBTB4

ENSEMBL Gene Tree for ZBTB4

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ZBTB4 gene

ZNF295² ZBTB38² ZFP161² ZBTB33²

Pseudogenes

1 related pseudogene

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/86 NCBI SNPs in ZBTB4 are shown (see all 86 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 53)

AB	SNP ID	Valid	Chr 17 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs9217^1,2	A,C,F,H,O	7303812(-)	`CTTAAA/GTATGA`	2	--	ut3¹		13	MN EA NA EU WA	1238
	rs871990^1,2	A,C,F,H	7307375(+)	`GTGGCC/GATGGC`	2	M/I	mis¹ ese³		9	MN EU EA WA NA	2326
	rs12453572^1,2	C,F,H	7303832(+)	`ATGTCT/AACAAT`	2	--	ut3¹ ese³		4	EU EA WA	410
	rs3853894^1,2	A,C,H	7311329(+)	`GGGGCG/AGGGGG`	2	--	ut5¹ ese³		4	EU EA WA	416
	rs34914463^1,2	C,F	7307343(-)	`CCGGAA/GTCCAC`	2	N/S	mis¹		5	NA EU EA WA	486
	rs35231078^1,2	C,F	7307409(-)	`CACAGC/TAGTCA`	2	A/V	mis¹		1	NA	66
	rs17732878^1,2	F,H	7303083(+)	`TCTTAT/CGGCCA`	1	--	ng5¹		7	NA EU EA WA	562
--	rs35376727^1,2	F	7306656(-)	`TGCTGA/G/TGCGGC`	4	E/G E/V	mis¹		1	NA	38
	rs11871207^1,2	C,F	7307804(+)	`AGCTTG/AGGCTT`	2	P/P	syn¹ ese³		1	NA	90
	rs3867594^1,2	A,C,F,H	7321405(+)	`AAAGAC/TGCCAG`	1	--	int¹		4	EU EA WA	388

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HapMap Linkage Disequilibrium images for ZBTB4 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 612308

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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9 PubMed articles for ZBTB4 gene:

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{2, 3} Strausberg R.L....Marra M.A. (2002)
Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10819331)^{3, 4} Nagase T....Ohara O. (2000)
A family of human zinc finger proteins that bind methylated DNA and repress transcription. (PubMed id 16354688)^{1, 3} Filion G.J....Defossez P.A. (2006)
Zbtb4 represses transcription of P21CIP1 and controls the cellular response to p53 activation. (PubMed id 18451802)³ Weber A....Eilers M. (2008)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)³ Kimura K.... Sugano S. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)
Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)⁴ Nakajima D.... Nagase T. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )⁴ Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 57659	HGNC: 23847	AceView: ZBTB4	Ensembl:ENSG00000174282	euGenes: HUgn57659
ECgene: ZBTB4	H-InvDB: ZBTB4

(According to HUGE)
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HUGE: KIAA1538

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for ZBTB4
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for ZBTB4:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for ZBTB4-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for ZBTB4		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for ZBTB4		Browse small molecules at Sigma-Aldrich
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	Cell Culture Products		ELISAs
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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ZBTB4 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for ZBTB4

Summaries
for ZBTB4

Genomic Location
for ZBTB4

Proteins
for ZBTB4

Protein Domains/
Families
for ZBTB4

Gene Function
for ZBTB4

Pathways & Interactions
for ZBTB4

Drugs & Compounds
for ZBTB4

Transcripts
for ZBTB4

Expression
for ZBTB4

Orthologs
for ZBTB4

Paralogs
for ZBTB4

SNPs/Variants
for ZBTB4

Disorders & Mutations
for ZBTB4

Medical News
for ZBTB4

Publications
for ZBTB4

Search for ZBTB4

Genome Databases showing ZBTB4

Other Databases showing ZBTB4

Specialized Databases showing ZBTB4

Licensable Technologies
for ZBTB4

Services
for ZBTB4

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

ZBTB4 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor ZBTB4

Summariesfor ZBTB4

Genomic Locationfor ZBTB4

Proteinsfor ZBTB4

Protein Domains/Familiesfor ZBTB4

Gene Functionfor ZBTB4

Pathways & Interactionsfor ZBTB4

Drugs & Compoundsfor ZBTB4

Transcriptsfor ZBTB4

Expression for ZBTB4

Orthologsfor ZBTB4

Paralogsfor ZBTB4

SNPs/Variantsfor ZBTB4

Disorders & Mutationsfor ZBTB4

Medical Newsfor ZBTB4

Publicationsfor ZBTB4

Search for ZBTB4

Genome Databases showing ZBTB4

Other Databases showing ZBTB4

Specialized Databases showing ZBTB4

Licensable Technologiesfor ZBTB4

Servicesfor ZBTB4

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for ZBTB4

Summaries
for ZBTB4

Genomic Location
for ZBTB4

Proteins
for ZBTB4

Protein Domains/
Families
for ZBTB4

Gene Function
for ZBTB4

Pathways & Interactions
for ZBTB4

Drugs & Compounds
for ZBTB4

Transcripts
for ZBTB4

Expression
for ZBTB4

Orthologs
for ZBTB4

Paralogs
for ZBTB4

SNPs/Variants
for ZBTB4

Disorders & Mutations
for ZBTB4

Medical News
for ZBTB4

Publications
for ZBTB4

Licensable Technologies
for ZBTB4

Services
for ZBTB4