Aliases for ZBTB4 Gene
Aliases for ZBTB4 Gene
External Ids for ZBTB4 Gene
- HGNC: 23847
- Entrez Gene: 57659
- Ensembl: ENSG00000174282
- OMIM: 612308
- UniProtKB: Q9P1Z0
Previous GeneCards Identifiers for ZBTB4 Gene
- GC17M007563
- GC17M007303
- GC17M007362
Summaries for ZBTB4 Gene
GeneCards Summary for ZBTB4 Gene
ZBTB4 (Zinc Finger And BTB Domain Containing 4) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include protein homodimerization activity and protein kinase binding. An important paralog of this gene is ZBTB38.
UniProtKB/Swiss-Prot for ZBTB4 Gene
-
Transcriptional repressor with bimodal DNA-binding specificity. Represses transcription in a methyl-CpG-dependent manner. Binds with a higher affinity to methylated CpG dinucleotides in the consensus sequence 5-CGCG-3 but can also bind to the non-methylated consensus sequence 5-CTGCNA-3 also known as the consensus kaiso binding site (KBS). Can also bind specifically to a single methyl-CpG pair and can bind hemimethylated DNA but with a lower affinity compared to methylated DNA (PubMed:16354688). Plays a role in postnatal myogenesis, may be involved in the regulation of satellite cells self-renewal (By similarity).
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB4 Gene
Genomics for ZBTB4 Gene
GeneHancer (GH) Regulatory Elements for ZBTB4 Gene
- Top Transcription factor binding sites by QIAGEN in the ZBTB4 gene promoter:
Regulatory Element Products
Genomic Locations for ZBTB4 Gene
- chr17:7,459,366-7,484,263
- (GRCh38/hg38)
- Size:
- 24,898 bases
- Orientation:
- Minus strand
- chr17:7,362,685-7,387,582
- (GRCh37/hg19)
Genomic View for ZBTB4 Gene
- Cytogenetic band:
-
- 17p13.1 by Ensembl
- 17p13.1 by Entrez Gene
- 17p13.1 by HGNC


RefSeq DNA sequence for ZBTB4 Gene
Proteins for ZBTB4 Gene
-
Protein details for ZBTB4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9P1Z0-ZBTB4_HUMAN
- Recommended name:
- Zinc finger and BTB domain-containing protein 4
- Protein Accession:
- Q9P1Z0
- B3KVL6
- Q7Z697
- Q86XJ4
- Q8N4V8
Protein attributes for ZBTB4 Gene
- Size:
- 1013 amino acids
- Molecular mass:
- 105114 Da
- Quaternary structure:
-
- Interacts with HIPK2. Interacts with CBFA2T3. Interacts with ZBTB38.
- SequenceCaution:
-
- Sequence=BAA96062.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for ZBTB4 Gene
Post-translational modifications for ZBTB4 Gene
- Phosphorylated by HIPK2. This phosphorylation reduces stability and triggers ZBTB4 protein degradation in response to DNA damage.
Other Protein References for ZBTB4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for ZBTB4
-
Abcam antibodies for ZBTB4
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Protein Products
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Assay Products
No data available for DME Specific Peptides for ZBTB4 Gene
Domains & Families for ZBTB4 Gene
Gene Families for ZBTB4 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Transcription factors
Protein Domains for ZBTB4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ZBTB4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for ZBTB4 Gene
Function for ZBTB4 Gene
Molecular function for ZBTB4 Gene
- UniProtKB/Swiss-Prot Function:
- Transcriptional repressor with bimodal DNA-binding specificity. Represses transcription in a methyl-CpG-dependent manner. Binds with a higher affinity to methylated CpG dinucleotides in the consensus sequence 5-CGCG-3 but can also bind to the non-methylated consensus sequence 5-CTGCNA-3 also known as the consensus kaiso binding site (KBS). Can also bind specifically to a single methyl-CpG pair and can bind hemimethylated DNA but with a lower affinity compared to methylated DNA (PubMed:16354688). Plays a role in postnatal myogenesis, may be involved in the regulation of satellite cells self-renewal (By similarity).
Phenotypes From GWAS Catalog for ZBTB4 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | IDA | 16354688 |
GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding | IDA | 16354688 |
GO:0003676 | nucleic acid binding | IEA | -- |
GO:0003677 | DNA binding | IEA | -- |
GO:0005515 | protein binding | IPI | 16354688 |
Phenotypes for ZBTB4 Gene
- MGI mutant phenotypes for ZBTB4:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for ZBTB4:
Animal Models for ZBTB4 Gene
- MGI Knock Outs for ZBTB4:
-
- Zbtb4 tm1.1(KOMP)Vlcg
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miRNA for ZBTB4 Gene
- miRTarBase miRNAs that target ZBTB4
-
- hsa-mir-130b-3p (MIRT020226)
- hsa-mir-122-5p (MIRT023262)
- hsa-mir-19b-3p (MIRT031203)
- hsa-mir-1226-3p (MIRT036449)
- hsa-mir-454-3p (MIRT039221)
- hsa-mir-652-3p (MIRT039514)
- hsa-mir-615-3p (MIRT039695)
- hsa-mir-331-3p (MIRT043490)
- hsa-mir-186-5p (MIRT044958)
- hsa-mir-181b-5p (MIRT047283)
- hsa-mir-30d-5p (MIRT047828)
- hsa-mir-99a-5p (MIRT048706)
- hsa-mir-93-5p (MIRT054255)
- hsa-mir-106b-5p (MIRT054256)
- hsa-mir-17-5p (MIRT054458)
- hsa-mir-19a-3p (MIRT054459)
- hsa-mir-1236-5p (MIRT078724)
- hsa-mir-483-3p (MIRT078732)
- hsa-mir-484 (MIRT147419)
- hsa-mir-3155a (MIRT147424)
- hsa-mir-3155b (MIRT147430)
- hsa-mir-6847-5p (MIRT147448)
- hsa-mir-20a-5p (MIRT439259)
- hsa-mir-3915 (MIRT449488)
- hsa-mir-4711-3p (MIRT449489)
- hsa-mir-431-5p (MIRT449490)
- hsa-mir-671-5p (MIRT449491)
- hsa-mir-7160-5p (MIRT449492)
- hsa-mir-6828-5p (MIRT449493)
- hsa-mir-3928-3p (MIRT449494)
- hsa-mir-381-3p (MIRT449495)
- hsa-mir-300 (MIRT449496)
- hsa-mir-6876-5p (MIRT449497)
- hsa-mir-4476 (MIRT449498)
- hsa-mir-7108-5p (MIRT500481)
- hsa-mir-548s (MIRT500482)
- hsa-mir-527 (MIRT500483)
- hsa-mir-518a-5p (MIRT500484)
- hsa-mir-7974 (MIRT500485)
- hsa-mir-663b (MIRT500486)
- hsa-mir-3926 (MIRT500487)
- hsa-mir-4524a-3p (MIRT500488)
- hsa-mir-519c-3p (MIRT500489)
- hsa-mir-519b-3p (MIRT500490)
- hsa-mir-4311 (MIRT500491)
- hsa-mir-519a-3p (MIRT500492)
- hsa-mir-548t-5p (MIRT500493)
- hsa-mir-548az-5p (MIRT500494)
- hsa-mir-526b-3p (MIRT500495)
- hsa-mir-106a-5p (MIRT500496)
- hsa-mir-20b-5p (MIRT500497)
- hsa-mir-519d-3p (MIRT500498)
- hsa-mir-301b-3p (MIRT500499)
- hsa-mir-4295 (MIRT500500)
- hsa-mir-3666 (MIRT500501)
- hsa-mir-130a-3p (MIRT500502)
- hsa-mir-301a-3p (MIRT500503)
- hsa-mir-766-5p (MIRT545941)
- hsa-mir-1252-5p (MIRT545942)
- hsa-mir-4433b-3p (MIRT545943)
- hsa-mir-181d-5p (MIRT726086)
- hsa-mir-181c-5p (MIRT726087)
- hsa-mir-181a-5p (MIRT726088)
miRNA Products
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Inhibitory RNA Products
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available ZBTB4 gene related products
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- Applied Biological Materials Clones for ZBTB4
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ZBTB4 Gene
Localization for ZBTB4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ZBTB4 Gene
- Nucleus. Chromosome. Note=Localizes to chromocenters. {ECO:0000269 PubMed:16354688}.
- Nuclear bodies (3)
- Nucleoplasm (3)
- Cytosol (1)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IDA,IEA | 16354688 |
GO:0005654 | nucleoplasm | IDA | -- |
GO:0005694 | chromosome | IEA | -- |
GO:0005829 | cytosol | IDA | -- |
GO:0016604 | nuclear body | IDA | -- |
Pathways & Interactions for ZBTB4 Gene
Interacting Proteins for ZBTB4 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0000122 | negative regulation of transcription by RNA polymerase II | IDA | 16354688 |
GO:0006351 | transcription, DNA-templated | IEA | -- |
GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
GO:0006974 | cellular response to DNA damage stimulus | IDA | 19448668 |
GO:0045892 | negative regulation of transcription, DNA-templated | IDA | 16354688 |
No data available for Pathways by source and SIGNOR curated interactions for ZBTB4 Gene
Transcripts for ZBTB4 Gene
mRNA/cDNA for ZBTB4 Gene
- (5) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (273) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ZBTB4 Gene
CRISPR Products
-
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Vectors and viruses for KO, Activation, Repression, and more
-
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Inhibitory RNA Products
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-
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Clone Products
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available ZBTB4 gene related products
- orf clones - Search results for available ZBTB4 gene related products
- Applied Biological Materials Clones for ZBTB4
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for ZBTB4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Heart (Cardiovascular System)
- Cushion Mesenchymal Cells Endocardium
-
Blood (Hematopoietic System)
- Hematopoietic Stem Cells Hematopoietic Bone Marrow
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZBTB4 Gene
NURSA nuclear receptor signaling pathways regulating expression of ZBTB4 Gene:
ZBTB4SOURCE GeneReport for Unigene cluster for ZBTB4 Gene:
Hs.35096Evidence on tissue expression from TISSUES for ZBTB4 Gene
- Nervous system(4.8)
- Lung(2.2)
Primer Products
-
OriGene qPCR primer pairs for ZBTB4
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No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB4 Gene
Orthologs for ZBTB4 Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | ZBTB4 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | ZBTB4 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | ZBTB4 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Zbtb4 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Zbtb4 33 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | ZBTB4 34 |
|
OneToOne | |
lizard (Anolis carolinensis) |
Reptilia | ZBTB4 34 |
|
OneToOne | |
zebrafish (Danio rerio) |
Actinopterygii | zbtb4 34 |
|
OneToOne |
- Species where no ortholog for ZBTB4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for ZBTB4 Gene
(28) SIMAP similar genes for ZBTB4 Gene using alignment to 2 proteins:
Variants for ZBTB4 Gene
SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000037248 | -- | 7,475,121(-) | C/T | genic_upstream_transcript_variant, intron_variant | |
rs1000232440 | -- | 7,477,714(-) | G/A/C | genic_upstream_transcript_variant, intron_variant | |
rs1000373927 | -- | 7,474,407(-) | T/C | genic_upstream_transcript_variant, intron_variant | |
rs1000442425 | -- | 7,479,604(-) | C/T | 5_prime_UTR_variant, genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
rs1000460840 | -- | 7,484,368(-) | T/C | upstream_transcript_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2422288 | CNV | deletion | 17116639 |
nsv1143849 | CNV | deletion | 24896259 |
nsv457659 | CNV | loss | 19166990 |
nsv523672 | CNV | loss | 19592680 |
nsv574322 | CNV | loss | 21841781 |
Additional Variant Information for ZBTB4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ZBTB4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZBTB4 Gene
Disorders for ZBTB4 Gene
Additional Disease Information for ZBTB4
No disorders were found for ZBTB4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBTB4 Gene
Publications for ZBTB4 Gene
- A family of human zinc finger proteins that bind methylated DNA and repress transcription. (PMID: 16354688) Filion GJ … Defossez PA (Molecular and cellular biology 2006) 2 3 4 22 58
- The transcriptional repressor ZBTB4 regulates EZH2 through a MicroRNA-ZBTB4-specificity protein signaling axis. (PMID: 25499219) Yang WS … Kim K (Neoplasia (New York, N.Y.) 2014) 2 3 58
- Kaiso directs the transcriptional corepressor MTG16 to the Kaiso binding site in target promoters. (PMID: 23251453) Barrett CW … Williams CS (PloS one 2012) 3 4 58
- The human protein kinase HIPK2 phosphorylates and downregulates the methyl-binding transcription factor ZBTB4. (PMID: 19448668) Yamada D … Defossez PA (Oncogene 2009) 3 4 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 51 available ZBTB4 Antibodies ranked by validation data
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Sources for ZBTB4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
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