ZBTB4 Gene
protein-coding GIFtS : 48
GCID: GC17 M007362
zinc finger and BTB domain containing 4
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Aliasesfor ZBTB4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Zinc Finger And BTB Domain Containing 4 1 2 KAISO-L11 2 3 KIAA15381 3 5 ZNF9031 2 KAISO-Like Zinc Finger Protein 12 3 Zinc Finger And BTB Domain-Containing Protein 42
Export aliases for ZBTB4 gene to outside databases Previous GC identifers: GC17M007563 GC17M007303
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Summariesfor ZBTB4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0 Function : May be involved in transcriptional regulation
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Genomic Viewsfor ZBTB4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010718.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ZBTB4 gene promoter: GR TBP HOXA5 HNF-4alpha2 GR-alpha Ik-3 HNF-4alpha1 Other transcription factors Search SABiosciences Chromatin IP Primers for ZBTB4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ZBTB4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.2 ZBTB4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M007362: view genomic region
(about GC identifiers )
Start:
7,362,685 bp from pter
End:
7,387,582 bp from pter
Size:
24,898 bases
Orientation:
minus strand
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Proteinsfor ZBTB4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0 (See
protein sequence )Recommended Name: Zinc finger and BTB domain-containing protein 4 Size : 1013 amino acids; 105114 Da
Subunit : Interacts with HIPK2
Subcellular location : Nucleus (Potential)
Sequence caution : Sequence=BAA96062.2; Type=Erroneous initiation;
Secondary accessions : B3KVL6 Q7Z697 Q86XJ4 Q8N4V8Explore the universe of human proteins at neXtProt for ZBTB4: NX_Q9P1Z0 Post-translational modifications:
Phosphorylated by HIPK2. This phosphorylation reduces stability and triggers ZBTB4 protein degradation in response to DNA damage1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9P1Z0 ZBTB4 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (2 alternative transcripts):
NP_001122305.1 NP_065950.2 ENSEMBL proteins: ENSP00000369973 ENSP00000307858 Human Recombinant Protein Products for ZBTB4: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
ZBTB4 for ontologies About GeneDecksing ZBTB4 Antibody Products: Assay Products for ZBTB4:
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Protein
Domains / Familiesfor ZBTB4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ZBTB4 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry Q9P1Z0 ProtoNet protein and cluster: Q9P1Z0
1 Blocks protein family : IPB000210 BTB/POZ domain UniProtKB/Swiss-Prot: ZBTB4_HUMAN, Q9P1Z0 Similarity : Contains 1 BTB (POZ) domainSimilarity : Contains 6 C2H2-type zinc fingers
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Functionfor ZBTB4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: ZBTB4_HUMAN, Q9P1Z0 Function : May be involved in transcriptional regulation
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
ZBTB4 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for ZBTB4 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ZBTB4 (NM_005341 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZBTB4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZBTB4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB4
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Pathways & Interactionsfor ZBTB4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ZBTB4 STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5 Interacting proteins for ZBTB4 (Q9P1Z0 3 ENSP00000307858 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA --
ZBTB4 for ontologies About GeneDecksing
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Drugs & Compoundsfor ZBTB4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ZBTB4 Search CenterWatch for drugs/clinical trials and news about ZBTB4
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Transcriptsfor ZBTB4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ZBTB4 gene (2 alternative transcripts): NM_001128833.1 NM_020899.3 Unigene Cluster for ZBTB4:
Zinc finger and BTB domain containing 4 Hs.35096 [show with all ESTs ] Unigene Representative Sequence: NM_020899 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000380599 (uc002ghc.4 ) ENST00000311403 (uc002ghd.4 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ZBTB4 (NM_005341 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZBTB4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZBTB4
Additional cDNA sequence: AB040971.2 AK027143.1 AK122826.1 AK122971.1 AY302699.1 BC015902.1 BC033259.1 BC043352.2 BC131774.1
10 DOTS entries : DT.100819620 DT.456393
DT.99957914 DT.91882042 DT.120976070 DT.304966 DT.95195736 DT.95285201 DT.95305021 DT.75156238 24/273 AceView cDNA sequences (see all 273 ):
BM697291 CB306760 BX491712 AB040971 AI203137 AI198133 AK122826 CA395952 BM692980 BU161722 AI144539 BM703239 AY302699 W37794 BC033259 AI669498 BM668322 BM664727 BQ880799 AI185028 AA617772 BU620047 BM563262 BM987036 GeneLoc Exon Structure
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Expression for ZBTB4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ZBTB4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTCCCTGGGAAbout this image ZBTB4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Endocardium Endocardial Tube Cells Endocardium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See ZBTB4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ZBTB4 SOURCE GeneReport for Unigene cluster: Hs.35096 SABiosciences Custom PCR Arrays for ZBTB4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ZBTB4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ZBTB4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ZBTB4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ZBTB4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB4
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Orthologsfor ZBTB4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for ZBTB4 gene from 2/8 species (see all 8 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
lizard (Anolis carolinensis)
Reptilia
ZBTB46
--
44(a)
1 ↔ 1
GL343660.1(198450-202067)
zebrafish (Danio rerio)
Actinopterygii
zbtb46
zinc finger and BTB domain containing 4
20(a)
1 ↔ 1
12(23884382-23896562)
ENSEMBL Gene Tree for ZBTB4 (if available)TreeFam Gene Tree for ZBTB4 (if available)
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Paralogsfor ZBTB4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ZBTB4 gene ZBTB21 2 ZBTB38 2 ZBTB33 2 18/27 SIMAP similar genes for ZBTB4 using alignment to 2 protein entries: ZBTB4_HUMAN (see all proteins )
(see all similar genes ):KLHL36 ZBTB21 ZBTB3 ZNF295 HIC1 KLHL2 ZBTB10 ZBTB38 ZBTB17 ZBTB7C KLHL32 ZBTB16 ZBTB20 ZBTB25 KLHL18 MYNN ZBTB49 NACC1
ZBTB4 for paralogs About GeneDecksing
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Genomic Variantsfor ZBTB4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ZBTB4 (7362685 - 7387582 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ZBTB4: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ZBTB4
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Disorders
/ Diseasesfor ZBTB4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ZBTB4 for disorders About MalaCards
ZBTB4 for disorders About GeneDecksing
OMIM gene information: 612308
OMIM disorders : --Export disorders for ZBTB4 gene to outside databases
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Publicationsfor ZBTB4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ZBTB4 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with ZBTB4) Utopia : connect your pdf to the dynamic world of online information
The human protein kinase HIPK2 phosphorylates and dow nregulates the methyl-binding transcription factor ZBTB4. (PubMed id 19448668) 1 , 2 Yamada D....Defossez P.A. (2009) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10819331) 1 , 2 Nagase T.... Ohara O. (2000) A family of human zinc finger proteins that bind methylated DNA and repress transcription. (PubMed id 16354688) 1 , 9 Filion G.J....Defossez P.A. (2006) Identification of oncogenic microRNA-17-92/ZBTB4/speci ficity protein axis in breast cancer. (PubMed id 21765466) 1 Kim K....Safe S. (2012) Comparative proteomic analysis identifies a role for S UMO in protein quality control. (PubMed id 21693764) 1 Tatham M.H....Hay R.T. (2011) Sequence-specific recognition of methylated DNA by hu man zinc-finger proteins. (PubMed id 20403812) 1 Sasai N....Defossez P.A. (2010) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231) 2 Olsen J.V....Mann M. (2010) System-wide changes to SUMO modifications in response to heat shock. (PubMed id 19471022) 1 Golebiowski F....Hay R.T. (2009)
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External Searches for ZBTB4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ZBTB4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ZBTB4 gene
(According to HUGE )
About This Section
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Specialized Databases showing ZBTB4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ZBTB4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ZBTB4 gene: Search GeneIP for patents involving ZBTB4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ZBTB4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ZBTB4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ZBTB4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ZBTB4 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ZBTB4 OriGene 3'-UTR Clone for ZBTB4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZBTB4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ZBTB4 OriGene Custom Protein Services for ZBTB4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZBTB4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ZBTB4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ZBTB4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ZBTB4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ZBTB4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ZBTB4
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ZBTB4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB4
ThermoFisher Antibodies for ZBTB4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZBTB4
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